Gene detail

Detailed information of RPACG21842.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21842.1	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	tig00035143	91935	116653	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG21842.1

ATGGCAATGGAACCACAGTACACGCTTCGGGAAACCCACAACCGCAATATCACAGCGCTTGGCTACAGTCCAGTCAGACGGGAACTCATGGCTGGCTTTGAAGATGGATTTATCCGCACATGGGAAGCAGATACAGGGAAGCCCGTTGCCCAGTATTGGGAGCACTCTGGTTGGGTGACAGACTTTACATACTGGACAGCGACAAAGTACATGCTGTCTTCAGCCAATGACGGGATTATCTTGGTTTGGAGCATTGGCGGTGGAGTTGCAGACTCTATTGTGATAGGGGTCCCAGTCTATTGTATGGCTCTCAACACAAGAAGACAGCAGCTGATTTGTGGTGTGAACGGCGGACTGCAAATATTCGCCCTTGACAGTGAAAAATCCTGTGGTCATGTGATCAACAACAAGCTTGTCTATTGGGCGAAAGAACACACAGACATTGTGCGGTGTATCGTTTGTCACGAATCACGTGCTTACTCTGCAGGGTATGACCAGAAGTTGATAATCTACGACACATCTTACACAGGGGAGAAGAGGATGGCTCCAGTTGTAACCACTCCAACAGCGCATGACGCTGGCATCATCTGTCTACTGCTGGTGAAAGACAATGAAAATAATATGTGGGTGGTGACGTCATCGTTTGACAAGACCGTTAGGATCTGGTCAATGGATGGCAAACTTGTGCACAAACTGGATGGCTTCTCGTCGACCGTGACAGGAATTTGTTACATGCCAAGGAATAAGGTTGTCTGGGCTGCTGGGGGAACCAGCTATGCCACGCTGTACGATTCACGTTCCGGGGATAACATATCAGACTTCATACCAATGTTCGATGATCAAGATCAGAATGAGGAGAAATATAGTCTACAAATCCTGAAATGTTTCCCGGAGTTCAACCAGGTGGTTGCATCAACAAGCAGACGACACATAATGACGTGGAAGTATAACCCCCAAGGATGTGTGACAACCCTGAAAGGCAACAGTCCACTGGAGAGCCTCACTTACACACGCAAAGTGCCGCTGTTGATCTTTAGTGGAAACACAGAAGGAACGATCACAAAATGGGAGAGAATGCAGTCCAACCACTTCATGTATAGCAAGGAGTTTTTTCTGCTCACTGACACGAAGCATGGCAAGAAAAGTTACAAGAAGAAAATCAAGTCGAAATTGAGTCGTAGCCTGGACAAGAATCACTTTGATGAGATGCCACACAAATTAAGCCAAAAAATGACATCATCGAGGGCACCCAGACCTTCCTACGCCCCAGCCCCCACCCTCGTCTCTAACGATATTAAGCAGCACGAACATCCGAACCTGACAATGTTGAGAATGTTGTTTGTCGAAAACTTGGATCTCCTCATATCTGCATGTGAAGATGGTAACATTTACATTTGGGGGTTTGACACTGCTGCTGTGACAGCACTGCAAAACATGGAGCCACTTGACTCCGACAAACTCCTCATCAGCAAGTATGCCGTGCTCCTTAGCAACAGCTCTGAGCTGCTCCGAGAAACGACACTCAGTGATGGCGACTCTGTAAGCAACCGCGTAGCTGGCTTTATCTGCAAGAACATCCTGGAAGAACACGACAGCTGCGTGACGTCCCTGGCTGTCGTTGGGCGTGACAAAGGCTACAACAGCACCTACCTGCTGTCGGCCGGCTGGGATCGCAGAATTGCATTATGGGATCTGGAGAATGGAGAACTGGTCGACACGTTAAAGAATGCACAGTTGTCCCCACGCGACGAGCATGTGGAGTTGGCCTGTGATGGAATCATCACAGACTTAGCCTACAGCCCAACCAGAGATGAGTTTGCATATTCGTCATCCGATCACATGGTCTACATTCGAAAGTTCTCGACACGTGGAGAAGAGATGGTGTTATTGAACACTCTGCAAGGCCACTTCATGGAGGTGTCATGTGTCGTGTGGAACCACGTCAAGTTAAAGTGGATCACAGGCTCTGAAGACAGCACAATCCGCATCTGGAGCGGATCTGGACTCAATGAATGTGAACAGACGCTGTCAGCAGCCGGGACCGTCACGGCCTTGTGTATTGACGTCATTAACGGTGCCATTGTTGCCGGAGTGCAGAACAATATTCGTGTGTTTGAAGCTGACCAGTATACTCTTGTACAGTCTAACATTGGCCACACTGACTCTGTCCGGGCACTCATACACATCGTTGACCGCAACCAGTATGCGTCGGCATCGTCAGACAAGACGGTGAGAATATGGAACTCATGGAGAGTTGTCCCGAGACGCAAGAAACTGTCCAAGATGAAAGGTGCTTCTGGGTTAAACATGCTCGACATGGAGAATGTGGAGAATTTAAAGGATAATGAGACGGAGACCGCAGACGACCTCGAATATGATGATGAAGATGACGACGAGTGTGTTGAGTAA

Transcript

RPACG21842.1

CCGACTTGAACACAAACATATTAGTTTGGAAATCCTGCTATGTAGCAGTGTTTTTGTCTTTCCTTTCTCTAAAATTGCGTCTTAAACACCCTATATAATACATGCGTTTACGTCACCGGCCACATTTGTAGCCAGAAATTATAACAATTAAAGAGCTCAGTGTGTTCAATGGATTAGGCCTGGGGAAATTAGCCTAACGACCTGCCATCTAGTGAGAATGCGTGCCTCGTTGCCTAACTACACGTGACAACAACATGGCGGCTATTACCAATACGAAAATGGAGATCAGGGGGACGAGCATTACAATGATTTGGGAATGATTCATGCATCGGATACATTATAATTGCTATTGTTAAACTTGTGTGGTGTATTGCTTGAACAGCCAAGATGGCAATGGAACCACAGTACACGCTTCGGGAAACCCACAACCGCAATATCACAGCGCTTGGCTACAGTCCAGTCAGACGGGAACTCATGGCTGGCTTTGAAGATGGATTTATCCGCACATGGGAAGCAGATACAGGGAAGCCCGTTGCCCAGTATTGGGAGCACTCTGGTTGGGTGACAGACTTTACATACTGGACAGCGACAAAGTACATGCTGTCTTCAGCCAATGACGGGATTATCTTGGTTTGGAGCATTGGCGGTGGAGTTGCAGACTCTATTGTGATAGGGGTCCCAGTCTATTGTATGGCTCTCAACACAAGAAGACAGCAGCTGATTTGTGGTGTGAACGGCGGACTGCAAATATTCGCCCTTGACAGTGAAAAATCCTGTGGTCATGTGATCAACAACAAGCTTGTCTATTGGGCGAAAGAACACACAGACATTGTGCGGTGTATCGTTTGTCACGAATCACGTGCTTACTCTGCAGGGTATGACCAGAAGTTGATAATCTACGACACATCTTACACAGGGGAGAAGAGGATGGCTCCAGTTGTAACCACTCCAACAGCGCATGACGCTGGCATCATCTGTCTACTGCTGGTGAAAGACAATGAAAATAATATGTGGGTGGTGACGTCATCGTTTGACAAGACCGTTAGGATCTGGTCAATGGATGGCAAACTTGTGCACAAACTGGATGGCTTCTCGTCGACCGTGACAGGAATTTGTTACATGCCAAGGAATAAGGTTGTCTGGGCTGCTGGGGGAACCAGCTATGCCACGCTGTACGATTCACGTTCCGGGGATAACATATCAGACTTCATACCAATGTTCGATGATCAAGATCAGAATGAGGAGAAATATAGTCTACAAATCCTGAAATGTTTCCCGGAGTTCAACCAGGTGGTTGCATCAACAAGCAGACGACACATAATGACGTGGAAGTATAACCCCCAAGGATGTGTGACAACCCTGAAAGGCAACAGTCCACTGGAGAGCCTCACTTACACACGCAAAGTGCCGCTGTTGATCTTTAGTGGAAACACAGAAGGAACGATCACAAAATGGGAGAGAATGCAGTCCAACCACTTCATGTATAGCAAGGAGTTTTTTCTGCTCACTGACACGAAGCATGGCAAGAAAAGTTACAAGAAGAAAATCAAGTCGAAATTGAGTCGTAGCCTGGACAAGAATCACTTTGATGAGATGCCACACAAATTAAGCCAAAAAATGACATCATCGAGGGCACCCAGACCTTCCTACGCCCCAGCCCCCACCCTCGTCTCTAACGATATTAAGCAGCACGAACATCCGAACCTGACAATGTTGAGAATGTTGTTTGTCGAAAACTTGGATCTCCTCATATCTGCATGTGAAGATGGTAACATTTACATTTGGGGGTTTGACACTGCTGCTGTGACAGCACTGCAAAACATGGAGCCACTTGACTCCGACAAACTCCTCATCAGCAAGTATGCCGTGCTCCTTAGCAACAGCTCTGAGCTGCTCCGAGAAACGACACTCAGTGATGGCGACTCTGTAAGCAACCGCGTAGCTGGCTTTATCTGCAAGAACATCCTGGAAGAACACGACAGCTGCGTGACGTCCCTGGCTGTCGTTGGGCGTGACAAAGGCTACAACAGCACCTACCTGCTGTCGGCCGGCTGGGATCGCAGAATTGCATTATGGGATCTGGAGAATGGAGAACTGGTCGACACGTTAAAGAATGCACAGTTGTCCCCACGCGACGAGCATGTGGAGTTGGCCTGTGATGGAATCATCACAGACTTAGCCTACAGCCCAACCAGAGATGAGTTTGCATATTCGTCATCCGATCACATGGTCTACATTCGAAAGTTCTCGACACGTGGAGAAGAGATGGTGTTATTGAACACTCTGCAAGGCCACTTCATGGAGGTGTCATGTGTCGTGTGGAACCACGTCAAGTTAAAGTGGATCACAGGCTCTGAAGACAGCACAATCCGCATCTGGAGCGGATCTGGACTCAATGAATGTGAACAGACGCTGTCAGCAGCCGGGACCGTCACGGCCTTGTGTATTGACGTCATTAACGGTGCCATTGTTGCCGGAGTGCAGAACAATATTCGTGTGTTTGAAGCTGACCAGTATACTCTTGTACAGTCTAACATTGGCCACACTGACTCTGTCCGGGCACTCATACACATCGTTGACCGCAACCAGTATGCGTCGGCATCGTCAGACAAGACGGTGAGAATATGGAACTCATGGAGAGTTGTCCCGAGACGCAAGAAACTGTCCAAGATGAAAGGTGCTTCTGGGTTAAACATGCTCGACATGGAGAATGTGGAGAATTTAAAGGATAATGAGACGGAGACCGCAGACGACCTCGAATATGATGATGAAGATGACGACGAGTGTGTTGAGTAACGCACTGACTTAACTATTCACTGTTCACTTCTTCGTGTATACCTCAAGCTCAGTGACGTGCCAGTATTTACTGTGATAAACCTTGAAATTGTACAGGAAGGAATTTAGACATCTGATGAGAGACCGTTTTTACTGTTATGTGCAGTAATATAAGCCCATCAAGTGTTGGGTGACTCTTCCACTTCCACTTCTTTATATTGCGGAAGAAAATAACAAAGACAAAAGAGGATATTTGCCTGCAGACTAATATATTATAAATAGGACATGTCTATAAACAGATACCAGTTGATGCCTGTGATATTGTGGATTACTTTTGATGACATATCCAAAGATGATGTAATCATATTGATGTTATGATGTTTTGTAAATTAAAATGTTGCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002307	Family	Tyrosine-tRNA ligase	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR051270	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004831	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006437	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21842.1 global RNA-seq network