Gene detail

Detailed information of RPACG21556.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21556.1	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	tig00035119	740921	743123	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG21556.1

CATAGTAGTAGAGTTCATGTAGTGCCGCGTTCAAGTTGAACTCATTCTCATGCAGCTGCAAACAACACATTATATTGTGGAAACAACACCATGACTCCAACAACTACAATAACACATTGTGAGAAGCATTGAATATTGTTGCAATTATGGTTTAAAGTTATATCCGAGAATGGAACGAGGCTGAGTGAGCACTGAGTATTTCCAGCTCCTACTTGTTATTCCCAGATCGTACCACAGTCAATGATAGCCATAATAACATCAACGAATTATGAAGAAATTAACTGGTCTTACAAAACAAAATAGCACACATAGCAACATATGGTAAATAAAATTAGGGTGCATGACATGAAGATTGAGTACGTTGTTTGAGCTGCCTGTATAAATGTGTTACATAGAACTCCTGTCCATAGCCACAGACCAGTGAACTCTAGACACAACATACTAAATGTTAAAGTAAACACAGCATTTCTGTCAAGTAAGACATGTGTCTTGCACATACGTTCTCTGTGACACAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACAGACCCACACAAAAGACACATACACAGCAGCAGACACACACACGCACGCACACACGCACACACACACACGCACACACACAGACACACACACACAGACACACACACAGACACACACACAGACACACACACACACACAACAAACACACACACACAGCAGACATACACATGCACATACAGCAGACACACACACAGCGCATAAACACACACAGCGCAGAAACACAGCGCAGACACACAGCAGACATAACACATTCACACATAGCAGACTCACACACATACAGACACACTCACACACACACACACACACAGACAGACAGACACACACACACTGATACACAGCAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGCCGACAAACACAGCCGACACACACAGCCGACACACACAGCCGACACACACAGCCGACACACACAGCCGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGCAGAAATACACACACACAGCAAACACACAGCAAACACACAGCAAACACACAGCAAACACACAGCAAACACACAGCAAACACACAGCAAACACACAGACACACACACACACACACATACAGCAGACACACACATAGCAGACACACACAGACACGCAGACACGCAGACATACACACAGTGCAAACACACATACACACACACACAAACATACACACACACACACACACACACACTCAGACAGACATACGGACAAAAAGACAGACACACACAGACACATTCAGACAGACAAACAGACAGACACACATGCGCATGCACAAACGAATGCATGCACATATTTCCTCACCTTGCTTTCTTCAGACAAGGTGACATTCATGTCTTGGTCACTTATTGCTGGCATTAACTTAATGTCCTGGTAATACCTGCAAGCAGAATAAATAAAATCAGTGGCAGTGTTTAAAGACAGCAAAAGCGTTATTTAGTATCCCGTCAGTGCAGTTAGCACACTCACATGTCATAGAACATGTTCCTGGACAGGATAAAAGGGCATTTCACATGAGAGCCATGATGGCAGTCTTTACGAAATCAAGGAAATGAACTTTGTGACATCAATGCATGTGTGACGAAACGTTAGTCATAATGTCTGTATTTACTAAATGCAAGGAAACAGACATTGTGACATAAATATATGTGTGTGGTGACACAAAAGTTCTGGCAGTGCCATGACAAATACAGAGAACTACAATATGCTTCTACTACAAAGCTCACTAATGGTCAGTATGGTGAAGACTGCAGAGAGCAGTTCATCCACTGATATGTCTATCACGATAGTGTAGACATATCAACTATTCTAATGCAATGGTAGATATGAGCCTATTGTGAAATAGCCTAAACCACAGGGCATCCTGTATCTACTTCAGGTTGTGAAGTAGCCTAGTCCACGGGGCATTCTGTATCTACTTCAGGTTGTGAAGTAGCCTAAACCACAGGGCATTCTATATCTACTTCAGGTTGTGAAGTAGCCTAAACCACAGGACATTCTGTATCTACTTCAGGTTGTGAAGTAGCCTAAACCACAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00382	TFIIB	Transcription factor TFIIB repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000812	Family	Transcription factor TFIIB	Interproscan
IPR013150	Domain	Transcription factor TFIIB, cyclin-like domain	Interproscan
IPR036915	Homologous_superfamily	Cyclin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0070897	Biological Process	transcription preinitiation complex assembly	Interproscan
GO:0097550	Cellular Component	transcription preinitiation complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21556.1 global RNA-seq network