Gene detail

Detailed information of RPACG21409.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21409.1	EPH RECEPTOR A5	tig00035114	165813	185346	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG21409.1

ATGCTCAACGAGTTGTTTGCACGCTTCGACAAACTCGCAGCGGAGAACCATTGTCTTCGCATCAAGATCCTGGGTGATTGCTATTATTGTGTGAGCGGCATGCCCGAAGCACGGCCCGATCACGCCCAATGCTGCGTTGAGATGGGGGTTGACATGATTGAAGCAATCTCACTTGTTCGAGAAGTGACGAATGTTGACGTGTTAAACATGCGAGTTGGCATACACAGTGGCCGAGTTCATTCTGGTGTTCTAGGACTGCGCAAATGGCAGTTTGATGTCTGGTCAAATGACGTGACACTCGCCAACAGCATGGAAGCGGGTGGGATACCTGGTCGAGTACACGTCACTGAGGCAGTGGTGAAGTGCCTGTGTGGGGACTATGAGGTGGAGCCGGGGGACGGGGGGAAGAGGAATAGCTACCTGCACGACCATGACATCAAGACATACCTCATTAAGACGGGACTCAACAGAACTGTGGAGAGACTGAAATCAAAGTCTCCACAGCCATCGCCCTGTAAAGACTGCGGCCCAAACTCTCGACAGATGAAGCGAATTGGCTACAACGAAGACTCGTCTGGCGCCGCGGTGCAGCAAAAACTGGGATTCGGGGAAGGGATCAGCTCAAAGACACCCGAGGAAGCTGTCAACGACTACCTTGGTCTTGCAATTGATGCACGAAGTATTGACCGCCTGCGATCAGACCACTGCAAAGGTTTCCTTCTGACCTTTCGCAAACCAGAACTGGAAGACAAGTATTCAAAGGTGCGGGACACAATGTTCAAGTCACACATGGGCTGCGCCTTCATCATGCTACTGCTTGTCTGTCTCACGCAACTTGTCATCATGCCATGGTCACTGATGATGGCTGGCCTCTTTGTCATCACCATTTGTTTGTTTGCCTTCATCATTCTGGCCGTCTTCTCAGAGAACAGCAAATGTACGCCAAAGGTCTTTAGAATGGTGTCCACATGGATCGCAGTCAACCGTCCATTCAGTCAAGTTGTTGCCGCCGCTGCTGTCATAGTTGTCTATGCTGCAGGATTCCTCTACATGTTTGCCCTGGACACAACACCACTGAGATCTTGTCTGGCGGTCATGTTTGATGTGCCAGAAGATGAAGTCAATGTCACACATCTGAAAGATTCTGGGATACAAATGGGATCAGAGGACAACAGTTGTACAAAGTCAGGTCAACCAACATCACATTTCCCACAGTACTTCACCTTCAACGTACTGCTGTCCATGATCTGCAGTGCTGTCTTCCTCCAAGCCAGCAGCATCCTCAAGCTCATCCTGCTCTTCTTCCTCTCCATCTTCTACATAATCTTTGTTGAAGTCACTCACAGCAGTCTCTTCAGCAATCAACGCCTTCTGCTACAGGCCCAGCATGCGGACAGTAACTGGTTGTTGGGAACGGCGGTGGGCGTGAATCTCGAGTGGGTCACCATCACCGTGTTGGTGCTTTTCACAGTCGCCCTCTTCATCCACGCCCAGCAGGTCGAGTCGACCGCCAGACTCGACTTCCTTTGGAAGTTACAGGCCTATGAGGAGAAGGAAGACATGGAGAGTCTGCGAGCGTATAACCTCAAGTTGCTCGCTAACATCCTACCAATGTACGTCGCAGAGCACTTCCTTAAGACACAGAACAGCAAGGACGAGGAGCTGTATCACCAGGGCTGTGAGAACGTGTGTGTCATGTTTGCATCAATAACGAACTTTGCTGAGTTTTATGTGGAACTGGAGGGAAATGATGAGGGTGTCGAATGTCTTCGTCTACTCAACGAGATCATCGCAGACTTTGACGAGATGCTTGAGGAGGAACAGTTTACGTGCATAGAAAAGATCAAGACCACTGGCTCCACCTACATGGCAGCCTCTGGACTAACGGAGAAAAGCAACTTTGCGGATCTGCGACATGTACAAGCTGTTGCAGACTACGCATTCGCCCTGCGTAAACAGCTTGAATGTGTCAACCAGCATTCCTGGAACAATTTCAAACTCAAGATAGGAATAAACGTGGGTCCAGTAGTTGCTGGTGTGATAGGGGTACGGAAGCCCCTCTATGACATCTGGGGCAACACGGTGAATGTGGCGAGTAGAATGGAGAGTACGGGCGTTGCTGACCACATACAGGTCACTAAGGAGGTCTATGAATCTCTCTCCCCCAAGGGGTACGTGTTCGAATGTCGTGGACTCATTAGTATCAAGGGAAAAGGTGAAATGTTGACCTATTTCCTCATGGACCAGCCGTCATCAAGGCAACAGTCATCATAG

Transcript

RPACG21409.1

CTGTTGACACAAAAAACTTGTTTCCCTTTCAGTATCCTCTTTGCCGACATATGTGGCTTCACTGCACTCTCCTCCCTGTGCACACCGTATGAACTTGTCAAGATGCTCAACGAGTTGTTTGCACGCTTCGACAAACTCGCAGCGGAGAACCATTGTCTTCGCATCAAGATCCTGGGTGATTGCTATTATTGTGTGAGCGGCATGCCCGAAGCACGGCCCGATCACGCCCAATGCTGCGTTGAGATGGGGGTTGACATGATTGAAGCAATCTCACTTGTTCGAGAAGTGACGAATGTTGACGTGTTAAACATGCGAGTTGGCATACACAGTGGCCGAGTTCATTCTGGTGTTCTAGGACTGCGCAAATGGCAGTTTGATGTCTGGTCAAATGACGTGACACTCGCCAACAGCATGGAAGCGGGTGGGATACCTGGTCGAGTACACGTCACTGAGGCAGTGGTGAAGTGCCTGTGTGGGGACTATGAGGTGGAGCCGGGGGACGGGGGGAAGAGGAATAGCTACCTGCACGACCATGACATCAAGACATACCTCATTAAGACGGGACTCAACAGAACTGTGGAGAGACTGAAATCAAAGTCTCCACAGCCATCGCCCTGTAAAGACTGCGGCCCAAACTCTCGACAGATGAAGCGAATTGGCTACAACGAAGACTCGTCTGGCGCCGCGGTGCAGCAAAAACTGGGATTCGGGGAAGGGATCAGCTCAAAGACACCCGAGGAAGCTGTCAACGACTACCTTGGTCTTGCAATTGATGCACGAAGTATTGACCGCCTGCGATCAGACCACTGCAAAGGTTTCCTTCTGACCTTTCGCAAACCAGAACTGGAAGACAAGTATTCAAAGGTGCGGGACACAATGTTCAAGTCACACATGGGCTGCGCCTTCATCATGCTACTGCTTGTCTGTCTCACGCAACTTGTCATCATGCCATGGTCACTGATGATGGCTGGCCTCTTTGTCATCACCATTTGTTTGTTTGCCTTCATCATTCTGGCCGTCTTCTCAGAGAACAGCAAATGTACGCCAAAGGTCTTTAGAATGGTGTCCACATGGATCGCAGTCAACCGTCCATTCAGTCAAGTTGTTGCCGCCGCTGCTGTCATAGTTGTCTATGCTGCAGGATTCCTCTACATGTTTGCCCTGGACACAACACCACTGAGATCTTGTCTGGCGGTCATGTTTGATGTGCCAGAAGATGAAGTCAATGTCACACATCTGAAAGATTCTGGGATACAAATGGGATCAGAGGACAACAGTTGTACAAAGTCAGGTCAACCAACATCACATTTCCCACAGTACTTCACCTTCAACGTACTGCTGTCCATGATCTGCAGTGCTGTCTTCCTCCAAGCCAGCAGCATCCTCAAGCTCATCCTGCTCTTCTTCCTCTCCATCTTCTACATAATCTTTGTTGAAGTCACTCACAGCAGTCTCTTCAGCAATCAACGCCTTCTGCTACAGGCCCAGCATGCGGACAGTAACTGGTTGTTGGGAACGGCGGTGGGCGTGAATCTCGAGTGGGTCACCATCACCGTGTTGGTGCTTTTCACAGTCGCCCTCTTCATCCACGCCCAGCAGGTCGAGTCGACCGCCAGACTCGACTTCCTTTGGAAGTTACAGGCCTATGAGGAGAAGGAAGACATGGAGAGTCTGCGAGCGTATAACCTCAAGTTGCTCGCTAACATCCTACCAATGTACGTCGCAGAGCACTTCCTTAAGACACAGAACAGCAAGGACGAGGAGCTGTATCACCAGGGCTGTGAGAACGTGTGTGTCATGTTTGCATCAATAACGAACTTTGCTGAGTTTTATGTGGAACTGGAGGGAAATGATGAGGGTGTCGAATGTCTTCGTCTACTCAACGAGATCATCGCAGACTTTGACGAGATGCTTGAGGAGGAACAGTTTACGTGCATAGAAAAGATCAAGACCACTGGCTCCACCTACATGGCAGCCTCTGGACTAACGGAGAAAAGCAACTTTGCGGATCTGCGACATGTACAAGCTGTTGCAGACTACGCATTCGCCCTGCGTAAACAGCTTGAATGTGTCAACCAGCATTCCTGGAACAATTTCAAACTCAAGATAGGAATAAACGTGGGTCCAGTAGTTGCTGGTGTGATAGGGGTACGGAAGCCCCTCTATGACATCTGGGGCAACACGGTGAATGTGGCGAGTAGAATGGAGAGTACGGGCGTTGCTGACCACATACAGGTCACTAAGGAGGTCTATGAATCTCTCTCCCCCAAGGGGTACGTGTTCGAATGTCGTGGACTCATTAGTATCAAGGGAAAAGGTGAAATGTTGACCTATTTCCTCATGGACCAGCCGTCATCAAGGCAACAGTCATCATAGCCTTGGCACAGTACTTGGACAATATGGTTATGAAGACATTACTTTGCCAACTCTTCTAGTCAGACATGCGTCTTAAGATGTTATATTAAGTATGTTATATTAAGTATGTTATACACTAGTATTTTTTACATTCAATATGTATTGATGTGTACAGAGTATTTGTTGAAATGGGGCCACGTGAATGTTTTGTATTTTTCAGGCATAATTGCATGTTTTCTTGTGCCATATGTTATAAAACTCTGTTGTTTAGACCAACAGAAATATAAAACCATCAGTTTGAGATGATTATTTTACAGCTTGTTAAGTTATAAAGATTTGATTGCAGCGTAATTAAACAATGAATGAAATGTTCTGATTTATTCAGATTCTGAAATATTTCCACTTCTCTGCCTGCAAGTCTGACTGTCTATCAACCCATCCATCTCTGTCAGTCTGCCACTTTCTGGCTGTCTGTCTGTCTGTCTGTCTCTCTCACCCTCTCTTTCACATTTCACTCTCTTGCTTGTTTTCTTTCTCTTCTTTGCCTCACTTGCTCTAGCTCTTGCTCTTTCTGTTGCTCTTACTCTTTCTGTTGCTCTTGCTCTTTCTGTTGCTCTTACTCGTTCTGTTGCTATTGCTCTTTCTGTTGCTCTTACTCTTTCTGTTGCTCTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050449	Family	Ephrin receptor tyrosine kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005005	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0048013	Biological Process	ephrin receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21409.1 global RNA-seq network