Gene detail

Detailed information of RPACG21406.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21406.1	TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5	tig00035114	138571	159385	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG21406.1

TTGCGTCGTCCTCCACTCATCGCGTACGGCCGCCACTGTTTACTCGCGCCGCTTTGTAGTGCGGCTCGTCACGGCGTCAACGACACGGCTCGCCGCGCACAGACCAGTTCGACTACCACAGGCTCGGCGTTCGCTCCTGCTCAGTGCTGTAACGACAACATCACCACAGACGTACACGCCGTCAACACGACAGTTGATCACGTGATCTGGAAGTAGAATTTAACAATTGGAAGTTGAACTCGACAAAATGTCGGACGTGAAACAAAAACCCGTGAAAGGAAAGAAACCGGACTTGAAGCAGAAACCAACAAAAGGCAAGAAACCGGAAACGCCACAAAAAGCAGAGAAAGGCAAACAACCAGAAGTGATACAGAGACCTTCTAAATTCAAGTTGCCGTCGAAAGGAACACCGACGTCAGCACCAAGTACGCCAACGGAAAAGACAAAACCTTCAACGCCGACAACACCGACGAGAAAAAACAAACCTAAAGACATCCCAGCAACAAATACACCGACAGAAAAAGGAAAGCCCAAAACACCACCAAACAATGCGACACCAACCAGCAAGGTACAGTCAGAGGAGACGCCGGGAGAGCAGTCGGTCAACTCGAACATGTCTGTGGACGAAGTCCGGGATGCGAGACAACGGCTGTCGGAACTGGAGTCTAAGTTAGAGACGTTGAATGCCGAAGAAGACAAGAAAATGGATGAGATCCGGCACATGGCCGGCTCGCAGATGAAGGAGAAGATGCAGCGACTGCAAGAACAGGTGAAACTCAACATCGACACGCAGCTCAGTAACGTGGGCAGCAGGTACGAGGAGCACGCGCTCGCGATGGTTGTCGACAAACAAACAGACGTGTTACGTACGAACAAAGTTATCCGCGAGGTTTCGCGCGCACTGGGCGCCGACTGGCGACCAGTGTTTGAACGACTGACATGCGTGTTCCCACAAGAGGCCGTCAATGAGGCGACGAAGAAGGTGGAGGCAGCGCGCTCTTTCATGCAGTCGTACACGGCGCTGCAGTGCTGGCGGGACGTGGCCGGCGACAAGTTCGACATCAACAGGCTGCCGATGGCGCTCAAGGAGTGCGGCCACCACGACTTAGGAGACACAGCCAATCGCATCCTCAACAGCGGAGGCGACGCGTTATTCTGTGTGACACGTAGCACATTACCGCCCGGCGTGAGACCGGAAACAGATGGCGCCACCAATGGAATATCTGATCCAGACCAAACTGCGCCTGCGCAAAGGTCAAAGATGGAGCAGGAGAACCATTTGGAAGGTTTGCTCGGAGACCGGAGGCTCCTAAGGATGGCTCGACTGATTGGCGGAGAATGGCTGCCGCTGGGTAATGCGCTGGGCATCCCGGAAGAAGAATTGAACGAGATCTCGGAGAGTGAAGGCGAGACCTACCAGGGGGCATTCAAGGTGTTGTGGGCGTGGCGAGACAATTTAGAAAATCGGTCAGAAGACAACATTGCACAACTCGCTGAAGCGCTGCGGAAATGCCACAAATCAGAAGCCGCGGATGAACTACAGAAGTAGACAAGCACATATATGTCCGTTTTAGCATCATATGTCCGTTCTAGCATCGAAGAACGTTGAGAACAGTTGCGATGAGGTGATCAAGAAAACTCCATGTACCTGGAAACGTGTCAAGCTGACTCAGCAACAGGAACGTTGTCGTAAAACGTTGTTGAACATTGTCTTGTTTTGTACGAGATGAAACAAGTACAACTTAGAATTACCCCTCACAGTGCTGGGGGTGATGTTGATGCATAATGAAGTTTTATCATTGTCGAGAATTCCCGTAATGGGACGACATCTTCTTTCAAATGCAAGCTTATATATTGCGCTATTGCTCTTCTGCATTCCTGCCGGATTACCGAGCCTACGATACTTACACGCTCATAGTGGCAATTGGGCCGGAGTTCGGCATTCGTATTGAACGCTACCAGAGCTACGATGGTCCGTCGTTCCGCTGTACGTCGCCGATGGAGCGCCTGCAGCCTGTTGCACGCAGTGCGCTGTCAGACGGATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004843	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR024927	Family	Purple acid phosphatase	Interproscan
IPR029052	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR051558	Family	Metallophosphoesterase Purple Acid Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10161	TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003993	Molecular Function	acid phosphatase activity	Interproscan
GO:0008198	Molecular Function	ferrous iron binding	Interproscan
GO:0008199	Molecular Function	ferric iron binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0045453	Biological Process	bone resorption	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21406.1 global RNA-seq network