Gene detail

Detailed information of RPACG21343.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21343.1	TRANSCRIPTION INITIATION FACTOR TFIID	tig00035111	642372	682413	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG21343.1

ATGTGGACAACCTTGTTCTACAGTAACAGCTCTAGTAAGCTTAACTCAATCGACTCGCAGGAATCACTCGATGCACAACTCAACGAGAAAGATCGGGGCATCTGCTCATGGCTAACTACGTTCTGCATTGTCAAGGACCGCAATATCTTGGAGAAATGTGGCCCGGATGCTGTTCAGTATCTGTCCTTCCAGCGCTACCTGTTGGTGTATCTGAGCATCATAACAGTTCTCTCCATATCCGTCGTGCTGCCAATCAACTTCATGGGAGAACTGGAGGGTGATAAAGAGACATTTGGTCACACAACTATGAAGAACTTGTTGCCAAATTCGCCCCTGCTCTGGGTTCACGCCACCTTTGCCGTCCTCTTCCTCGTGATCCTCGTCGTCCTCATGAGGCACTTCTCCATCAGCCTACACGACATTGAGGAGGAACACGTGACGAGAACTCTCCTCATCACAAACATCCCAGAGCCAGTCTGCTCCAAGGATCTCTTGCAACAACATTTTGTAGAGGCCTACCCAGAATGCAACTTAGTTGCGGTCAACATTGCCCATGATATCTCCCGGCTCAGCGTGCTGGAAAAGAAAAGGCAGACAGCAAGGGAGGGGCGTGTGAACTCAGAGATTATCTACCAGAAGACAGGGGAACGTCCTACTATCTACCCCTACCACTTTGGGCAGTTGTGTTGCTGCTGCACAAGTTGTGGTTGTAAACAGGTGGATGCGATTGAGTACTATGGCGAGAAGGAGAAAAAGTATGAGTTGTCATGTGAGCTGGAGCGCAAGAAGTCACTCAAGACGAAGCTTGGCATCGCATTTGTCACATTCGCTGAGCCTCTGCACACGGCCAAGATCCGTGCAGACTTCAAGGCGTCTTGTAACGGGGAGCACAACCCAAGTATATCTTCTGTGTTCAAGCTTCTCAAGGTCATCAACTGGGAAGTGCACTATGGTCCACTTCCCTCCAGTATATATTGGGAGAATCTGGCGATGTCTCCTGCCACCTGGTGGGCAAAGGCGATGTGCCTCAACTTGAGCGTGTGTATTCTACTTTTCTTCCTCACTACTCCGTCGATGATTCTCAATCTGCTCAACCAGACTAGTTACATCAAAGCTGTCACTTACATCCATAGTAACTTTCTGGTGCAGTTCCTTCCCACACTGATCCTCCTTGCCGTCTCCACCGTACTGCCTAACATCGTCTACTATTCCGACCAGCTCATTGGCCACTGGACAAGGACGGCTGAGCATCACATTGTAATGAGGAAGACCTTCATCTTCCTCCTCCTCATGGTCCTCATCCTGCCGTCTCTCGGTCTCACCAGTGCCAAGGCATTTCTTGAGTGGTTCATTGCACAGAACACAGACTTGTACAGGTTCAGGTGGCAGTGCATTTTTATACCAGACAATGGTGCATTCTTTGTAAACTATGTCATCACATCGGCACTAACTGGTACAGCCGTTGAACTCATGAGAATCCCGGAGCTGTTGGTGTATGGTCTCAAGCTGGCCTACGCCCGGTCCGCGGCAGAGAGAACCTCTGTCGGCAAGTCGGTCATGTGGGATTTCCAGTATGGCATTCAGTATGCCTGGATGCTCGTTGTCTTCGCTGTCGTCATGGCCTACAGCATTCCCTGTCCCCTCATCACACCATTTGGTCTGCTGTATCTGGTGATGAAGCACCTGGTGGACCGCTACAACATATACTTTGTCTACAAACCCTCCAAGATCGACCAGAAAATCCACAGCAGTGCCATCAACTTTGTCATCGTGTCCGTCATTCTCCTTCAGTTCTGTGTGCTCTTCTTCACGTTTCTGCGCACAGAGACACTGCAGCCCGTGTCGGTCTTCTCACTCATTGCCATGTTTTTCACACTACTGATCTTCTCAGGCCATGTCTGCTTCAACTGGTTCAAACTTTGCTGTCATGCCCCCTATGTTCATCTGTCTTCTGATCGAAACACAGTCAGCCTTTCTGATGTTCAGGAAATCTATGTCCCAGACATTTTGCTGGCTGACACACGTAGTAAGAAGTCTCACGACCCATCAACAGAGGGTCCTGGGGCGACTGGTGCGGGAGAACCCCACGGATATGGGGCAACAGAAGGGGTGCCATTCCAGTACTACAAGACTGGCCAGGACACAACCACCAAGATGGAGCCACAAAATATGGGTTCAGATCCACCCGTGGAGGGCCAGCAAATTGGTACACACTATCAGTCTGAAGGCAATCTCATCTCACCTTGA

Transcript

RPACG21343.1

ATTGTCAACACTGTTGCATGTGGACAACCTTGTTCTACAGTAACAGCTCTAGTAAGCTTAACTCAATCGACTCGCAGGAATCACTCGATGCACAACTCAACGAGAAAGATCGGGGCATCTGCTCATGGCTAACTACGTTCTGCATTGTCAAGGACCGCAATATCTTGGAGAAATGTGGCCCGGATGCTGTTCAGTATCTGTCCTTCCAGCGCTACCTGTTGGTGTATCTGAGCATCATAACAGTTCTCTCCATATCCGTCGTGCTGCCAATCAACTTCATGGGAGAACTGGAGGGTGATAAAGAGACATTTGGTCACACAACTATGAAGAACTTGTTGCCAAATTCGCCCCTGCTCTGGGTTCACGCCACCTTTGCCGTCCTCTTCCTCGTGATCCTCGTCGTCCTCATGAGGCACTTCTCCATCAGCCTACACGACATTGAGGAGGAACACGTGACGAGAACTCTCCTCATCACAAACATCCCAGAGCCAGTCTGCTCCAAGGATCTCTTGCAACAACATTTTGTAGAGGCCTACCCAGAATGCAACTTAGTTGCGGTCAACATTGCCCATGATATCTCCCGGCTCAGCGTGCTGGAAAAGAAAAGGCAGACAGCAAGGGAGGGGCGTGTGAACTCAGAGATTATCTACCAGAAGACAGGGGAACGTCCTACTATCTACCCCTACCACTTTGGGCAGTTGTGTTGCTGCTGCACAAGTTGTGGTTGTAAACAGGTGGATGCGATTGAGTACTATGGCGAGAAGGAGAAAAAGTATGAGTTGTCATGTGAGCTGGAGCGCAAGAAGTCACTCAAGACGAAGCTTGGCATCGCATTTGTCACATTCGCTGAGCCTCTGCACACGGCCAAGATCCGTGCAGACTTCAAGGCGTCTTGTAACGGGGAGCACAACCCAAGTATATCTTCTGTGTTCAAGCTTCTCAAGGTCATCAACTGGGAAGTGCACTATGGTCCACTTCCCTCCAGTATATATTGGGAGAATCTGGCGATGTCTCCTGCCACCTGGTGGGCAAAGGCGATGTGCCTCAACTTGAGCGTGTGTATTCTACTTTTCTTCCTCACTACTCCGTCGATGATTCTCAATCTGCTCAACCAGACTAGTTACATCAAAGCTGTCACTTACATCCATAGTAACTTTCTGGTGCAGTTCCTTCCCACACTGATCCTCCTTGCCGTCTCCACCGTACTGCCTAACATCGTCTACTATTCCGACCAGCTCATTGGCCACTGGACAAGGACGGCTGAGCATCACATTGTAATGAGGAAGACCTTCATCTTCCTCCTCCTCATGGTCCTCATCCTGCCGTCTCTCGGTCTCACCAGTGCCAAGGCATTTCTTGAGTGGTTCATTGCACAGAACACAGACTTGTACAGGTTCAGGTGGCAGTGCATTTTTATACCAGACAATGGTGCATTCTTTGTAAACTATGTCATCACATCGGCACTAACTGGTACAGCCGTTGAACTCATGAGAATCCCGGAGCTGTTGGTGTATGGTCTCAAGCTGGCCTACGCCCGGTCCGCGGCAGAGAGAACCTCTGTCGGCAAGTCGGTCATGTGGGATTTCCAGTATGGCATTCAGTATGCCTGGATGCTCGTTGTCTTCGCTGTCGTCATGGCCTACAGCATTCCCTGTCCCCTCATCACACCATTTGGTCTGCTGTATCTGGTGATGAAGCACCTGGTGGACCGCTACAACATATACTTTGTCTACAAACCCTCCAAGATCGACCAGAAAATCCACAGCAGTGCCATCAACTTTGTCATCGTGTCCGTCATTCTCCTTCAGTTCTGTGTGCTCTTCTTCACGTTTCTGCGCACAGAGACACTGCAGCCCGTGTCGGTCTTCTCACTCATTGCCATGTTTTTCACACTACTGATCTTCTCAGGCCATGTCTGCTTCAACTGGTTCAAACTTTGCTGTCATGCCCCCTATGTTCATCTGTCTTCTGATCGAAACACAGTCAGCCTTTCTGATGTTCAGGAAATCTATGTCCCAGACATTTTGCTGGCTGACACACGTAGTAAGAAGTCTCACGACCCATCAACAGAGGGTCCTGGGGCGACTGGTGCGGGAGAACCCCACGGATATGGGGCAACAGAAGGGGTGCCATTCCAGTACTACAAGACTGGCCAGGACACAACCACCAAGATGGAGCCACAAAATATGGGTTCAGATCCACCCGTGGAGGGCCAGCAAATTGGTACACACTATCAGTCTGAAGGCAATCTCATCTCACCTTGACGCGTCTGAATGTTCCCTTATTCTGCCCAGGTGTGCTACATTCACATCAGTGCATGACAATGAGCATTCGAGAAAAACATCCTATGTTAATACCATTCGATTAAATATGGAACTAAGCTTTGTCGTTGTATTAGTATTATAGGCTGCAATTCTACTAATTTACTTAAACCAGTTTTTTGTTACGAAAACAAATCCTCGTTTACTTTAGCATTTGTATGTGAATTCATTCAAGATAGATATTTTCTTTGTTTTTCCTGTGACTGACATTTAGGGAAACACTGTTTCATGAAACAGTTGCTAAACTCATGGTTTTAATGCTCTAATAAATGTTTGCTGATGTGCATTTTTGCGTGCCTGCTGAAGTAAATGTTCATCATTTAATAATCATCCTGCCAACAGATGTACAAATTCCTCCTGTTCACAAACATCAGCTGGTCAGTAAAGGCGAATGTAGGTAATAACCGACTGCCGACTGCCTCCGAGGGAACCACTGATCTTGTAGAACAATCTACGCCACGTATGTTGCATGTAATAGGCAATGTATAACGTGGAGTGGTGTTAGTCAAGCCAATTTAGTTAAGTTCTGGCCATGTGCATTTTGTGTTACGGTTTTGATGAAATGGTGTTGAACATGTGTCAATTTGTAACATGAGTATCAGTTGGTTCAGTTGCCATTGGTTTCATTTTCATGTGACCAGAGATTATAATGGAATTGTGTTATAGTCATACACTAGCTGTTATGTTCACATGTAGTATGTACAGCGGTTAATATGTGGCGGCGGCCATGCCTTAAATTCTGCCAAGTTAAATGAAATAGAGTTAGTCATGTCTGTATGTAACAATGGCTGAGGTTAAAATTGAAGGCATTTTTGTTAATCACACACTTGAAATGTCCTGTTTGTGGTGTATGGTAGGCAAGGTGGTCAGGTCCCCCAGGTTACCTTGCTGGTGGCTTTGTTACATGATGTTGTGCAATACGTGCATTGCAATATATTTATTTCTGTATAACAGATGCTGATGTGGTCAGCATAGCGCAATATGTTATTTATTTATTGTTGTATTGTTTTTATCATTGCATGTTTTATCTAGATTTTAGTTTGCCGTTCTGCTGCTGTATCATTCATTTGGAATATTTTGTCATAATAATTTAGATGCATACTTACACAGTAATGTTACACTTATGAGAACATTACTGTATAAGTTAGAGTGTGATCCTACTGATGTGTTTTGAAATGTTTATTAATTAAAAAAATATATGGTTATTGGTAACAAAACCTTGTTAAATGATATTTTATTGAGTCATATTCTGCTGGTACTGGTGTCAGTTTCATGAAGCAGCTAAAACATTCATAAACCTAAGAAGTCTTTCTAAATAATAATTTACTAAATGTTCATTAGTCAAGTTATCAGTTCCATATAAATGTTTTGTATCCGGTGGGTATCATAGAATTGTATTGGTCATACCTTAAAAGTTACGTTTACAATATGTGAAGCAATTAAGTGGGTGTGGTCATACCTTAAATTCTGCTATGTGTGAATGGAATTTCTACATGAATTGACATTAAGCCATTTACTAAGAATTAGTAAATGATGCACATGGCACTTTATTCATAAGGGAACATAAGAGTTTACACAATCACATGAAGCTATGTAATGGCTTAACTTAAAAAAATGCTTCATGAAACTGGACCAAGGAATCTGATCTGTAATCTTGTAAGAGACTTATTTATCACTTTACAATTAGCATAATATTAATTTATTTGTATTTAAAGTGTATTGTAAAGATGTGTTAAATAAATGAATTTTGTCTTGCTGAATCATTTTATCTGTTGTTTATTTGTGCACTGAGATTGTGTAATCATGCTTATGCGAATTATTGCTGCCATAATTTGATAGAAAATATACAAATTTGACTATTACAACTGAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01433	Peptidase_M1	Peptidase family M1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014782	Domain	Peptidase M1, membrane alanine aminopeptidase	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027268	Homologous_superfamily	Peptidase M4/M1, CTD superfamily	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan
IPR042097	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21343.1 global RNA-seq network