Gene detail

Detailed information of RPACG21276.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21276.1	PROTEASE M1 ZINC METALLOPROTEASE	tig00035109	42042	45761	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG21276.1

ATGAACCGCTATGTGGAGCGTTTCTGTATTTGGGTATTTCTATTTACAGTATGCAATGTATTTGCGCTTACGAACGTGTCTTCGGTATCATCGACATCGTTTGGTACGCCGTCCACGGGGCAGACGACTTGGACTGATGTGTCTGGTTTTACCTTTCTTTCTGCGCACGAAAACACCACATGTAGAGCGCTGTCAAAACACATCAGATGCTATGAAAATGTAACTTTTGTTGTTACTCGTCAAATTGACAAAGGGTCTGAAAGTTACGAACAGGTCTTAGAAATACAGTTTGTAGCGTTTAACAAACAGTTCACGCTATTATTATACGCAGAAATATCGCGTAGAAAAATATCTATATTCCATCCTGATTTAGCAGTTACTGTGTACGGACATTCGGGACGTAGACGTATTAATTACACTTTAGATCGTTATTTCAGTGGATATTTAAGAAATGATCCGTCGTCTTTGTTTCATGGAAAATATTATGATGACATTTTGGACGGTATAATTTACACGGACGAAGAGTCATACTACCTAGAGCCAATGCACACGTATTTCAATACAACGAGCCAGCAAAGCAAACGCATGTTGGTGGCATACCGAGAAAAAGATGTGATTTGGTCGGCTCAGAATCTAACGACAACTGGAACCCTAGATTATAATTCGAAAAAATCCGAACGAAAATCTGGCGGCCGTGAGGATGTTTACACGACTGATACATATGCTCGAAATTACGTTCACGCTGCACCACAATACTCACGCAAACGAAGACGGTCTATTGCGACCGAGTACAAAGTTTGTGAACTCACAATAGTCGTTGACCACACTTTTTACCGAACGGCGTGTGGCGGTTCCCTCGCAAAAACGGTAGATAGGATCAGTTTTACCGTACGGGCAGCTGATAAATATTTCCGACGCATTGACTTCAATTCCGACACTGTGGCTGACAATATCGGCTTCGTAATAAAAGACATAATAATCTTCACAAGAAAATCTGTACCTGGCTATGACCTCAGCGACAGCAGTAATGCCAACGTGGTTCTCAAAAAGTTTTCATTTTCGTACAATTTTCGTGAAAGCTGCCTAGGTGTGCTGTTTACTCATCGGCAGTTCCACAAGGGAGTAATAGGTCTCGCCTACACAGCAAGTTCGACGCAGTACGGGCCGCCTGGCGGTGTGTGCTATCCACCAATGATACGTGCACACGGCTGGAAATCCCTCAACACGTTGCTGTTGACAACTCGCAACTATTTAATAGACATTCCGTGGAGCACAGTTGCGTTGACACTAACCCACGAGATCGGTCATTCGTTCGGGGCGCATCATGACACTGAGGCGAGGTGTACGCCGGGAGGCAAGTACGGCATGTACGTCATGCACACGTCGGCGACCGACTTCACGAAACCGAACGCTTTCATATTCTCGCCGTGCAGCATCAGCCAGATGAGCCCAGTGGTGCAACAGAAGGCGACGTGTTTGAAGGTGTACGACTCGGACAAGTACTGCGGCAATTACTTGCGGGACGAAGGCGAAGCATGCGACTGCGGAATCGATCCGAATCAGTGTCAAATCTTCGACCGATGCTGTATTCCGCCTTCCATTGAAGAACCAGGTTGTCGCATAGGACACGAATTCGGGTACATCTGCAGTCCATTTGCTTCTCCGTGCTGCACGGACTTGTGCCAGGTGGAGACGGAAGCACGAGAGTGTCGTGCCGCCACGGAGTGCACGCGGACAGCCGTGTGTGACGCACTCAGTGTCGAGTGCCCTGAGGCCGTGCCACTGGCGGACGGTACTCCATGTGCAGGCGGCGCTCGTGTCTGCACCGACGGATCGTGCGTCGGTAGTAGATGCGAGCTGTACGGGTGGGTGGATTGCCATTGTGTCGGAGTCGAACACGAACTCTGCCAGTTGTGCTGTGCAACAACAAACACTTCTCAGTCGGACTGCAAGCCTGCTCACAGTATTGACGACGCCGACAACTTAGTGACGCCGATGTACAAAAACGAAGCGGAGACTTGCAACGAACACACCGGATACTGTACTGCGAGACATACATGCATTATTGCGTATCTCAAAGATGTCGACAACGTATACAATGCGATATTTCAGAAGTCGGCTGGAGAACAAATGCACGAGTACGTTGTGAACTACTGGTTCTACGCCGTGCTGGCTTTGTTTTTACTGCTCCTGTGTGTCGCGCTGATCATAAGCGCGTACGAAAGAGACCACTCGACAAGCAGGATGGGCTATAGATCCGCCAAGTGTGCGGCGTTTTGGCACATAATGAAGTCGCAGAAGGTTCCACTCGCCGAACAGCTAAGGAGACTCGAACTACTGCATGACGACCTGGTGAATAAGTTGCAGCAGGAGAAGTCATTAGATGTCATCGTAGCAGTAGCACGACTTCGTATTATTTTCCCGACAACACCAAGAGACAAAGTAGTCGCTGCAGTGTTGCACAGTAACTGTGAGGAGTTTGCAGTGAGAAGGTTGCTGATCTTAGGATATCCGCTGAAGCCTCTATGA

Transcript

RPACG21276.1

CGAAGGATCAGAGTTCACACGCTGGTGCAGCGTGCATGTTTTTTAATGTCTGTTTTTCTTCCGGAATGAACAACAAACGTGGATATGATAATATTGCAGCGTCGCCGACATTCTTGCTATGAACCGCTATGTGGAGCGTTTCTGTATTTGGGTATTTCTATTTACAGTATGCAATGTATTTGCGCTTACGAACGTGTCTTCGGTATCATCGACATCGTTTGGTACGCCGTCCACGGGGCAGACGACTTGGACTGATGTGTCTGGTTTTACCTTTCTTTCTGCGCACGAAAACACCACATGTAGAGCGCTGTCAAAACACATCAGATGCTATGAAAATGTAACTTTTGTTGTTACTCGTCAAATTGACAAAGGGTCTGAAAGTTACGAACAGGTCTTAGAAATACAGTTTGTAGCGTTTAACAAACAGTTCACGCTATTATTATACGCAGAAATATCGCGTAGAAAAATATCTATATTCCATCCTGATTTAGCAGTTACTGTGTACGGACATTCGGGACGTAGACGTATTAATTACACTTTAGATCGTTATTTCAGTGGATATTTAAGAAATGATCCGTCGTCTTTGTTTCATGGAAAATATTATGATGACATTTTGGACGGTATAATTTACACGGACGAAGAGTCATACTACCTAGAGCCAATGCACACGTATTTCAATACAACGAGCCAGCAAAGCAAACGCATGTTGGTGGCATACCGAGAAAAAGATGTGATTTGGTCGGCTCAGAATCTAACGACAACTGGAACCCTAGATTATAATTCGAAAAAATCCGAACGAAAATCTGGCGGCCGTGAGGATGTTTACACGACTGATACATATGCTCGAAATTACGTTCACGCTGCACCACAATACTCACGCAAACGAAGACGGTCTATTGCGACCGAGTACAAAGTTTGTGAACTCACAATAGTCGTTGACCACACTTTTTACCGAACGGCGTGTGGCGGTTCCCTCGCAAAAACGGTAGATAGGATCAGTTTTACCGTACGGGCAGCTGATAAATATTTCCGACGCATTGACTTCAATTCCGACACTGTGGCTGACAATATCGGCTTCGTAATAAAAGACATAATAATCTTCACAAGAAAATCTGTACCTGGCTATGACCTCAGCGACAGCAGTAATGCCAACGTGGTTCTCAAAAAGTTTTCATTTTCGTACAATTTTCGTGAAAGCTGCCTAGGTGTGCTGTTTACTCATCGGCAGTTCCACAAGGGAGTAATAGGTCTCGCCTACACAGCAAGTTCGACGCAGTACGGGCCGCCTGGCGGTGTGTGCTATCCACCAATGATACGTGCACACGGCTGGAAATCCCTCAACACGTTGCTGTTGACAACTCGCAACTATTTAATAGACATTCCGTGGAGCACAGTTGCGTTGACACTAACCCACGAGATCGGTCATTCGTTCGGGGCGCATCATGACACTGAGGCGAGGTGTACGCCGGGAGGCAAGTACGGCATGTACGTCATGCACACGTCGGCGACCGACTTCACGAAACCGAACGCTTTCATATTCTCGCCGTGCAGCATCAGCCAGATGAGCCCAGTGGTGCAACAGAAGGCGACGTGTTTGAAGGTGTACGACTCGGACAAGTACTGCGGCAATTACTTGCGGGACGAAGGCGAAGCATGCGACTGCGGAATCGATCCGAATCAGTGTCAAATCTTCGACCGATGCTGTATTCCGCCTTCCATTGAAGAACCAGGTTGTCGCATAGGACACGAATTCGGGTACATCTGCAGTCCATTTGCTTCTCCGTGCTGCACGGACTTGTGCCAGGTGGAGACGGAAGCACGAGAGTGTCGTGCCGCCACGGAGTGCACGCGGACAGCCGTGTGTGACGCACTCAGTGTCGAGTGCCCTGAGGCCGTGCCACTGGCGGACGGTACTCCATGTGCAGGCGGCGCTCGTGTCTGCACCGACGGATCGTGCGTCGGTAGTAGATGCGAGCTGTACGGGTGGGTGGATTGCCATTGTGTCGGAGTCGAACACGAACTCTGCCAGTTGTGCTGTGCAACAACAAACACTTCTCAGTCGGACTGCAAGCCTGCTCACAGTATTGACGACGCCGACAACTTAGTGACGCCGATGTACAAAAACGAAGCGGAGACTTGCAACGAACACACCGGATACTGTACTGCGAGACATACATGCATTATTGCGTATCTCAAAGATGTCGACAACGTATACAATGCGATATTTCAGAAGTCGGCTGGAGAACAAATGCACGAGTACGTTGTGAACTACTGGTTCTACGCCGTGCTGGCTTTGTTTTTACTGCTCCTGTGTGTCGCGCTGATCATAAGCGCGTACGAAAGAGACCACTCGACAAGCAGGATGGGCTATAGATCCGCCAAGTGTGCGGCGTTTTGGCACATAATGAAGTCGCAGAAGGTTCCACTCGCCGAACAGCTAAGGAGACTCGAACTACTGCATGACGACCTGGTGAATAAGTTGCAGCAGGAGAAGTCATTAGATGTCATCGTAGCAGTAGCACGACTTCGTATTATTTTCCCGACAACACCAAGAGACAAAGTAGTCGCTGCAGTGTTGCACAGTAACTGTGAGGAGTTTGCAGTGAGAAGGTTGCTGATCTTAGGATATCCGCTGAAGCCTCTATGATGCCGGTAGTTGTGGGCAAAGGTGCGCTTAGAAACCGCCGGTGACAGGAATTTGTTATTGACCTGTGTTGGTGGTGTTGCCTGAAAGACGTAATGGCATTTAATTAAAGTGAAATTGTTATAAAATGCATTTTAAAGTGCAGATGTTATATAGCAAGTGTGCTATTTATCCAGAGCGTACTTCATACATGCAAACACGCACCACACGCACCACACGCACCACACGCACCACACGCACCACACGCACCACACGCACCACACGCACCACACACGACAGTATGATAAAACATCACTTAATATTTACGATAGATATTTGGAAGAATAACATTGCTACAAGAAATTATAAGTTTGTAACAAAAACTAGAGACACGTATCTACTTTCCGCCAAGTAAGAACGAATTGCATCACCGGTTAATTGCTTAAGATCAAATAATAATGTTTTTATTCATGTGAATTTATATGGCGCCTAGACTTAATTTTAATCGGGAAGTTGTAGCAGGGAGTGAAAATAACATGCAGCATTCCACACCGTAATATGCGTGACATGACCTAGAGTTTCACTGTCGATTTAAAGGTACACAGTTCGTTCTTGTTTATTTTAGAATAATATCATACTTCGTAACTAACATCAACGGTATCGTAGTGAAAACCGAATATATATTTTTACGAAGCAAAACCGTGTTTAAAATGTAACCCTTCAATGTTGATAAGAATCGCAGCCCTGCTACACAAATCGTTGCGACAGTTGAAACATCAACATATCATGCTGATTAATGGTTAGCTACTACATGTCTTGTCAATATTATACAGAAGATGGAATTTATTATACTATAACACTAAAAACTATGGCATTGTGTATCTTAACATTTCATGATTTTAGTTCTAAGGATCATCACAGGGAGAAAGTCATGTTTAATTGCAGTACAATCCAGAAGGCGGCGCCACTATTTGGCGTGCTCCTTAAAATAACAAAAGAAAATAATCTCTTACGTCAACACAGCAGGCGGCGTGAGTCAATTATTTTGCTCATTCTATGGTATAGGGAAGGATCCGGCTGCAGAAAATGTACTTTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17900	Peptidase_M1_N	Peptidase M1 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042097	Homologous_superfamily	Aminopeptidase N-like , N-terminal domain superfamliy	Interproscan
IPR045357	Domain	Aminopeptidase N-like , N-terminal domain	Interproscan
IPR050344	Family	Peptidase M1 family aminopeptidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11533	PROTEASE M1 ZINC METALLOPROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042277	Molecular Function	peptide binding	Interproscan
GO:0043171	Biological Process	peptide catabolic process	Interproscan
GO:0070006	Molecular Function	metalloaminopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21276.1 global RNA-seq network