Gene detail

Detailed information of RPACG21186.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21186.1	UNCHARACTERIZED	tig00035103	864974	904924	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG21186.1

ATGAGTAAGATACCAGGTCCTGTTGCCAATGGCGGTCCACCACAACAGGACTCCCAGCGCGGGCAAGATGGCAGGGCCAGCCAAGAAATAAGGCAGTCTGCCCCACGGAAAATATCCCACCCCTCCCCAGCGGCATCCAAGGAGAGGGTGGGTGACACTGACACGGGCTCGGCACGCGTTCCCAGAAATGCTTCTGGGCAGCCAGATTCGAACGGGACGACAACGAATATGGACAGTGTTAGGCAGAGTAATACGTCGAGTGGTGATGTGGCAAGAGGGAAACTGGACAAGATCACAAGTAATGGGTCCGTGCAACATAGTCCTAATGAACAACCACCAGGGGATGCCACCATTCAGTCGGAGCAGGGTGACGTTGTGCCGATGCCAAGGAATAAGAAATTATCAGCAGCAAAATCAGTTGCAAGGAGCAACACACAGTCTTCAGCTGGACTACTTTCCCAGAGTGAGGAGGAGGACACTATCAATGTCGTTGTGAGGGTGCGACCACAAAGTCAGCCTGACATCAGCCGGGCAGAGAAGATGATTATTCAATTTCCTGGTGATGGTGCATTGTGGATAGACAATTCGGTGCAAACAAAGTCGTTCACGTTCAACGTGACCTTTGAACCAGAGGCGACACAGGAAGACGTCTTTGAAAACTGCGGGGTGAAGAAACTCATTAACATGGCCCTAAATGGATACTCATGCACAGCGTTTGCATTTGGCCAGACGGGTTCGGGAAAGACACACACCATCACAGGACCCCCTGATCTGTTTCCAGGTAATCATTGGCGTAACCCAGACCAGTACGGCCTCATACCTCGCGCCTTCTATTACCTCTTCTATCTCATAGAGAAGCAGCCGCCCCAGACGGCCTTCAGACTCACTGCCTCCTTCCTCGAGATCTACAACGAACAGGTGATAGACCTGTTGGACCCCAATCACCGTAAGAACCTACAAGTTCGGTGGTCCAAGAACCGTGGCTTCTACGTCGAGAATCTCTTTGTGGTGGAGTGTGAGACCCGAGACGACCTCATAGCTGTGCTCGAAGAAGGTCTGCGAAATCGTCAGACGGGAGTGAACAGTATGAATGAACATTCTAGTCGAAGTCATAGCATGCTCACCCTACACATTGACACGGACGTACCCGATTCGGAGGATGAGAAGATGTTCATCACGAAACATGGCAAACTCACATTTGTTGATCTTGCTGGGAGTGAGAAGTCCAAGACAGACATGGTGTCAACGGCAGAACAACAGACAGAGTCTCATAACATCAACAAGAGTCTCTTAGTGCTTGGTAACTGTATATCGGCCCTGGGGGACGTGCGGAAGAGACAGGGATACATTCCGTATAGGGACAGCAAGCTGACAAAGCTACTCGCTGACAGTCTAGGAGGAAGTGGAGTGACACTCATGATTGCCTGTGTGTCTCCGTCCTTCTCCAATGCCACCGAGAGCATGAACACGTTGAGGTACGCAAACCGTGCCAAGAAAATCAAGTCGAAACCCGTCATCAAAATGGATCCACGAGAACAGCTGATCCTGAGTCTGAAGCGAGAGATTAAGATCCTAAGACAAGAGAACCACTACCTGAGACAACAGCTGGAGTTCCCCGTGAAGCCGCGCGGTCAGCTTCAGAAGGAGAACGACATGAAGTTTCTGCAGATGCTGAAGGACCACAAGATGGAGAGCAAGGCAATCTCCGACCACGGCCTCTACGAGATGCTGCAGGAGTACATGATAGAGAATGAGATTCTCAGAGTGGAGAACACAGAGCTTCATCAAATGCGAGACTTCAGTCGGCGGGAACAACAGATGCTGGCTCGAGACAACGAGAGACTAATGCGGAAACTTGAGAACGCGCTAGGAAGTGACAGATCTGCCCTCCAGACACCCATGTCAAACTACAGTCTTCAGTCGGCAACTATCTCCATGCGAAGTTCTGTCATCAGTTCAGACGTCAGCTTAGGGGGCACGCCCCTTGGGGGTTCCCAGCCCCCGGGCAGCTGGAACTCGACCCCCGTGGAGATGTCTGCCACACCCCGCAACATGAAGAACCCCGCCCCCCACCTACAGCATCCAATGAGACCTCCCCACCGGCTCTCGGAGCCAGTCAGCAGCTCTGTCGGCAACACCAAACCCCAAGGCTATGTAAACCGCCTGCAGCAGCAGAATGATTACAGGGCCAGCAACCCTGGAACTATGTCTAGCATCGCTCCTACTGGGCCTAGCAAGCCGAACCTGATACGAGGCTCCAAAGAAACAAGCCATCGGATAGACGAGACAGCTCAAAGTCAACAGGATCGCAGTAAACAATACAGCCCATCAAGTGTGGCGGAAATTCAAGAGATCAATGAACGGCTGCGACAGGAACTCTTAGAACTTGAAGGACAAATCAAACTGCAGAGCCGAGAGATGAACACGAGACCGTAG

Transcript

RPACG21186.1

GCCAAATTGTGGTTCAGTGCATTGATCAGGGCTTCCAGAAGAGTGCATCGGCAAATACAAACAGAAACTGATGACGATTGCATTGAGCCCGGAAAACAATCCAAAGACAAACTGATGAGTTTGACTCAGGGCAAAGGATAACAGACAGTAGAAAGAACATGACGGCAATGGGGCTTTAGGACGACTTGTTTTCAAGTAGACTGATATTTAGCAGACCAGTGGAAGAGAGGATATGAGTAAGATACCAGGTCCTGTTGCCAATGGCGGTCCACCACAACAGGACTCCCAGCGCGGGCAAGATGGCAGGGCCAGCCAAGAAATAAGGCAGTCTGCCCCACGGAAAATATCCCACCCCTCCCCAGCGGCATCCAAGGAGAGGGTGGGTGACACTGACACGGGCTCGGCACGCGTTCCCAGAAATGCTTCTGGGCAGCCAGATTCGAACGGGACGACAACGAATATGGACAGTGTTAGGCAGAGTAATACGTCGAGTGGTGATGTGGCAAGAGGGAAACTGGACAAGATCACAAGTAATGGGTCCGTGCAACATAGTCCTAATGAACAACCACCAGGGGATGCCACCATTCAGTCGGAGCAGGGTGACGTTGTGCCGATGCCAAGGAATAAGAAATTATCAGCAGCAAAATCAGTTGCAAGGAGCAACACACAGTCTTCAGCTGGACTACTTTCCCAGAGTGAGGAGGAGGACACTATCAATGTCGTTGTGAGGGTGCGACCACAAAGTCAGCCTGACATCAGCCGGGCAGAGAAGATGATTATTCAATTTCCTGGTGATGGTGCATTGTGGATAGACAATTCGGTGCAAACAAAGTCGTTCACGTTCAACGTGACCTTTGAACCAGAGGCGACACAGGAAGACGTCTTTGAAAACTGCGGGGTGAAGAAACTCATTAACATGGCCCTAAATGGATACTCATGCACAGCGTTTGCATTTGGCCAGACGGGTTCGGGAAAGACACACACCATCACAGGACCCCCTGATCTGTTTCCAGGTAATCATTGGCGTAACCCAGACCAGTACGGCCTCATACCTCGCGCCTTCTATTACCTCTTCTATCTCATAGAGAAGCAGCCGCCCCAGACGGCCTTCAGACTCACTGCCTCCTTCCTCGAGATCTACAACGAACAGGTGATAGACCTGTTGGACCCCAATCACCGTAAGAACCTACAAGTTCGGTGGTCCAAGAACCGTGGCTTCTACGTCGAGAATCTCTTTGTGGTGGAGTGTGAGACCCGAGACGACCTCATAGCTGTGCTCGAAGAAGGTCTGCGAAATCGTCAGACGGGAGTGAACAGTATGAATGAACATTCTAGTCGAAGTCATAGCATGCTCACCCTACACATTGACACGGACGTACCCGATTCGGAGGATGAGAAGATGTTCATCACGAAACATGGCAAACTCACATTTGTTGATCTTGCTGGGAGTGAGAAGTCCAAGACAGACATGGTGTCAACGGCAGAACAACAGACAGAGTCTCATAACATCAACAAGAGTCTCTTAGTGCTTGGTAACTGTATATCGGCCCTGGGGGACGTGCGGAAGAGACAGGGATACATTCCGTATAGGGACAGCAAGCTGACAAAGCTACTCGCTGACAGTCTAGGAGGAAGTGGAGTGACACTCATGATTGCCTGTGTGTCTCCGTCCTTCTCCAATGCCACCGAGAGCATGAACACGTTGAGGTACGCAAACCGTGCCAAGAAAATCAAGTCGAAACCCGTCATCAAAATGGATCCACGAGAACAGCTGATCCTGAGTCTGAAGCGAGAGATTAAGATCCTAAGACAAGAGAACCACTACCTGAGACAACAGCTGGAGTTCCCCGTGAAGCCGCGCGGTCAGCTTCAGAAGGAGAACGACATGAAGTTTCTGCAGATGCTGAAGGACCACAAGATGGAGAGCAAGGCAATCTCCGACCACGGCCTCTACGAGATGCTGCAGGAGTACATGATAGAGAATGAGATTCTCAGAGTGGAGAACACAGAGCTTCATCAAATGCGAGACTTCAGTCGGCGGGAACAACAGATGCTGGCTCGAGACAACGAGAGACTAATGCGGAAACTTGAGAACGCGCTAGGAAGTGACAGATCTGCCCTCCAGACACCCATGTCAAACTACAGTCTTCAGTCGGCAACTATCTCCATGCGAAGTTCTGTCATCAGTTCAGACGTCAGCTTAGGGGGCACGCCCCTTGGGGGTTCCCAGCCCCCGGGCAGCTGGAACTCGACCCCCGTGGAGATGTCTGCCACACCCCGCAACATGAAGAACCCCGCCCCCCACCTACAGCATCCAATGAGACCTCCCCACCGGCTCTCGGAGCCAGTCAGCAGCTCTGTCGGCAACACCAAACCCCAAGGCTATGTAAACCGCCTGCAGCAGCAGAATGATTACAGGGCCAGCAACCCTGGAACTATGTCTAGCATCGCTCCTACTGGGCCTAGCAAGCCGAACCTGATACGAGGCTCCAAAGAAACAAGCCATCGGATAGACGAGACAGCTCAAAGTCAACAGGATCGCAGTAAACAATACAGCCCATCAAGTGTGGCGGAAATTCAAGAGATCAATGAACGGCTGCGACAGGAACTCTTAGAACTTGAAGGACAAATCAAACTGCAGAGCCGAGAGATGAACACGAGACCGTAGCTGCCACCAGGGGCACGAGAAGTCGAGCATCTGTTACGACCAGGATTACACAGACAAAGCCAAATGTGTGCATTTCTACAGCAGTGACCGAGAGAACAAGATTAACATATGTAAATACTGCAGACTGATCTGTCATTTACCACATTGCTACATCTTGTGTTTAAGTCAGTACCCAGCAAGACTGTTTACAGGCTTTTATGACAGTGTGTCGATTGTCGTAGCACAAGAAACATGGGTATGATTTAGTGATAAAAGGCATGACTATAATAATTATGTATTTATGTGCATCAATATGTGCTTTATTTAAGCTGTTATGCAACTCATATTTTCAAAACAGGAATAATAAATTGTGTAAATAGAAGATATTGTATACAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan
IPR027513	Family	RNA-splicing ligase RtcB homologue, eukaryotic	Interproscan
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006388	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0072669	Cellular Component	tRNA-splicing ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21186.1 global RNA-seq network