Detailed information of RPACG20621.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG20621.1WD40 REPEAT PROTEINtig0003508210000171001304-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF17814LisH_TPLLisH-like dimerisation domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR006141PTMIntein N-terminal splicing regionInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan
IPR006595DomainCTLH, C-terminal LisH motifInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR045184FamilyWD40 repeat-containing protein SMU1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR22848WD40 REPEAT PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0016539Biological Processintein-mediated protein splicingInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG20621.1 global RNA-seq network
TOP