Detailed information of RPACG20328.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG20328.1DNA LIGASE 4tig0003507123800562430044+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01068DNA_ligase_A_MATP dependent DNA ligase domainDomainInterproscan
PF01442ApolipoproteinApolipoprotein A1/A4/E domainDomainInterproscan
PF04675DNA_ligase_A_NDNA ligase N terminusFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000074FamilyApolipoprotein A/EInterproscan
IPR000977FamilyDNA ligase, ATP-dependentInterproscan
IPR012308DomainDNA ligase, ATP-dependent, N-terminalInterproscan
IPR012310DomainDNA ligase, ATP-dependent, centralInterproscan
IPR016059Conserved_siteDNA ligase, ATP-dependent, conserved siteInterproscan
IPR029710FamilyDNA ligase 4Interproscan
IPR036599Homologous_superfamilyDNA ligase, ATP-dependent, N-terminal domain superfamilyInterproscan
IPR044125DomainDNA Ligase 4, adenylation domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45997DNA LIGASE 4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0003910Molecular FunctionDNA ligase (ATP) activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005958Cellular ComponentDNA-dependent protein kinase-DNA ligase 4 complexInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006297Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0006869Biological Processlipid transportInterproscan
GO:0008289Molecular Functionlipid bindingInterproscan
GO:0032807Cellular ComponentDNA ligase IV complexInterproscan
GO:0042157Biological Processlipoprotein metabolic processInterproscan
GO:0051103Biological ProcessDNA ligation involved in DNA repairInterproscan
GO:0071897Biological ProcessDNA biosynthetic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG20328.1 global RNA-seq network
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