Gene detail

Detailed information of RPACG19519.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG19519.1	MULTIDRUG RESISTANCE PROTEIN	tig00035053	1449281	1478098	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG19519.1

ATGTACAGAGTAAACGGCTCTTCAGTTGACTTGGCACCGACATTGATGACAATTTACGACAGCTACTCGGCGTCCATCAACTCAACACCTCCGAACGCGACATTGTCTCCTCTGTCAGCTGACCAGTCATGTGCCAGGCAGCTGCAACACCACCTCGCCAAATCATGTAGTGACATCCACTACGAGAATGTGCAAACAGTTCGCAGCCAGACAGAGTGTGCGATGGAGAATCTGACAGAGACTCACATGGAAGCAGCCCGAGTTTCCTCAGCTGAACTTAATGGTGACGTCCCATCAGCACTCATAAACTTGGTTCTCTCGAATGATGCCAAAAAGAGGCCGCTCAGCATCAGTTCGACATCATCGTCAAACTCGTCCACGTCCTCACTGCCGCGGCACCAACGCAAGAAGGTAGCAACAACCTTGTGCCTAGCAACGGCCACGACGACGTGCCTAGCAACGGCCACAACAATGTGCGTGACAACCACACGGAGTGGTCAGCCTGCACTATGTCGCATCGCTGCGCCCATGGATACGTCAGCTGGTCTGACAGCAGCGCCACCCAGTGACAGCACAAATGGCACAACGAGAACTAGTCTATCGAACTTGTGTGATATTGTTGATAAGGATGTACATAAGGTTAAATTTACCAGTGCATCAGGACGGAATGTGTTCATCGACAGAGTGGTTACAGAAATCCTTGACAGTGAACGTTCATACGTACGAGATCTGAATGACATCATACAGGGTTATCTGCGGCACATTCTAGAGACACCTGAACTCAGCATCTCAGAGGAGGATGTGGTCGCACTATTTGGCAACATTGAGGCCATCTACCACTTCAGCAGGGGTTTCCTCGAATGTCTGGAACAGTGTGGACATGACGCTGTCAGTATCGCCCGCTGCTTCGTAGACATGACTGACGGCTTTGACATCTACACCCAGTATTGCACCAACTACCCCAGGAGTGTGGTGGTGCTGACACAGTGCGTCAATGACACCCAGCTCGCAGTGATGTTCAAACAGAGGCAAGGCATGCTGGGACATGGCCTACCTCTTGGAGCCTACCTCTTGAAGCCCATCCAGAGGGTGCTCAAATACCATCTACTGCTCCAGAAAATCGTGAACAACTATGATGAGAATGAGGCTGGCTATGACATGATCACGAAGGCTCTCAGCTCCATGACACACATGGCCGCACATATCAATGAAATGAAGCGTAAACATGAACACACGATGCGAGTGCAGGAGATACAGTCAGTGCTGCATGACTGGGATGGCCATGACCTCATTACCTATGGGGATCTCATCTTAGAGGATTCGTTTCGCATGTCCGGAGCAAAGGTCAACCGGCAACTGTTCCTTTTCGAGAAGGGTTTGCTCGTGACGAAAAAACGAGAAGACGGCCACCTGCTGGTGAAGGCCGCAATTGAAAGTTCAAACCTGATGCTGATAGAAAGTATTCCAAAGGAACCCCTCAGCTTCCATGTCATTCCCTTCAACAACCCCAAAGTGCAATACACGGCACAGGCTCGTAGTTTGGAGCAGAAGAGGAAGTGGTGCCGCGAGATAAAGCGACTTATCCTCGAAAACTTCCAGTCTGTGATTCCCGAGAAAGTGAAGGAGTTGGTGATGGAATTGGGGAAGAGCCGGGAGGAGGAGGATTTAGACAACTCATTGTATGAGATTCGAGAGCAGGCGCCCCGACAGCATAGTGCCCCGGAATACCTAGAGAGACGACGCGCGGGAAGGCGCAAGTCTACCAGCATGATACTAGACTTTGGCCTGCTGAAATCCAGATTAGCTGCCAAAAAGTCGCCCCCTCCTCGGAGACGCTCTGACATCACACCACCAAACTTTGCCTCTCGCATGAAGTCTCGCTTGACGGACACTGCAGAGGAGGTGGGAGGAATCTTGGAGGAACAGGACAGTCTACAGAGCATTGATGACTCGAGTACGGACTACTCAGGCATTGACACAAACACCAGTATGCAGGACTCAGACACTCCACACAACCATTCCAACAACTCCCCCACCCTCGAAGCGGACAGCGAGGATTCGGAAGCTGAAACTGTGTCACCGGCATGGAGGCGTGAGAGTTTAAAAAAGGCGACCGATTCATTTAATCGAATCGATTCGCAGATGAAGCCGCGATGTCGGAGAAATGCAACTGTCCAGCGGCCGGAACAGTTCATGTCTGCCCTGGAGATTCCGGGTGATGTCTCAAGAACTCGGCCTTCCGGGAAGGAAGGTAGTGAGCATTCCAATCGAGAGGATAAAGGTGGCTCTCGAGAAGATGTTGACATTTCGCACACTCCTGCTGATGACAACAGTGAGGGTGGCACAAACCAGCACAAAACAATTACGTCGTCCTCCCGCCACAGGAACGACACATCCAGTCATGTCTTGGCGACCAGTTGTTCCTCCCCAGTGCTGTTGTCTCGCTCTTCCCGGCAAGGGAATGACCCATGGGTGCCGATGGAGGAGATGGTGTGCAATGAACAGGACAAGACCGAGCGAGCTCGCAGTCCCTGTCGGTCGTCGGTCAGTCCGTCGCGTGAATTTAGCAGTGGGCTCCTGTTTCACGCAAACTCGTGTACGTCGCTGAGTGACTGCGTAGCGAGTGCTGCGTTGTACAGCAAGTGTAGCTGCTCGGCAGTGATCAGTGTGCTTGGATCACCCCGGGCATCACGGCAATATATGGATGTATCACCGCAACATTCGACCAATGTTGAGTGGCAGCCAGGTCAGGCAACACCCCTTAAGATGGACAAGAATCCAGACTCTGACAAAGAACTGTGTGGGTTCTGTTCAGAAGACTCAGTGGGTGCTCTCAAGGGGGCACCACCTGTGCGTTGCACGTGCAATGAGCGGAAGTCTGATGCAGTCGGAGTGGCCAGCTCGGGGTCCTCGCCCCAAGGGGAAGGGTACAAACCGAAGTACGTAACGCCAAACATGAAGCGGTTCAGTGCATGTCGGTCAAGTAGCTTCTGTGACACAACGCAACATGCGGTCAAATCACATCTCAGCCCATCTCTGTCCAGTCCTTGCACCACCACATCCACCGACTCCCTCGTTGACTCACTGCGCAATGCAGTTGGTAACCTGCGGTCAAGACTGACCAGACGACAAGCTGCTGGTCACAGTCGGATGCAGCGGGCACGATCAGCGAGTGCCATTGACCGCATCAGTCAGCGGTCGCCACCTCGGGAGACAAAGGACAAGGGACGACGGCGACAGAATAAACTGGTTCAGCAGCTGAAGAGGACGTACAGCGAGAGGGACCGAAAGAGGAATCGCTTCGGCGGCAGCACTATCATCATCTCGTCCGCAGAGCGAAGACAGGTGGATGCATCGAAAGAACTGATGAGTCTGTTGAAGGAGACAACGCAAGGAAGTCCCGCGATTGGGGCACGCTACGCCACAGCGCGACCATATTCCCTCACCAATCACACCCTACCCCGTCGCATGCAGCCATCTTTCACTTGTCTCAACACATCAGCCTCTGACACGGAAACCATCCCTAGTCAACCAACACCAACACGGGTTACAAAAGATGATCGCCGCTTGGCGTATGACTCCGGCTGTGTCGACACAGACATCTTGTGTACGTCACAAAAAGACATCAGTGGCAATGCGCCGGAAGTGACCATTGATGACTTCTCTGATGAGACATTCAGACAACTCGAGATTGGCCCAAGGAAGATACTCGACAGTGTCGATACCGTCAGCAACGCGCCATCTTTGGACAGTTATTACGAGCGGAGGTTAGCTGAAGAGTTGGAGTTAGACGTCATGAGTCATCACAGTGACGAGGCCGTGTTCCGTGACTCTGCAGTGTACAGCGACGATGGCATATTGCTCTGTGCAGGTGACATGCCCATCGATGACGATAGTGACATGCCCATCATTGACAGTGGTGACATGCCCGTCACTGACATCAGTGACATGCCCATCATTGACAGTGGTGCCAACAAAGACAATGCCGCAGTTGAGAATGATAAGAGCACCACAATGCAGGATTCGGATGACTGCATCAACAATGTTGACACTCAACATGAAAATATCACGGGCAGTGCTGGTTTAAATGCAAAAGGGATTGCCAACATTAGTGACATTGCACAAAGCAAGCCGCCGGTGATATCAGATGCCGTCAAGTCGATCCACGAGAAGTACAACAATGTGTCGACTTCACATGCAAAGACAAAGCAAAAACTCATCAAGAAGGCTCCAGCATTTCAGGATATCTTGCGCAACCTGGAAGCCAGCAATGTCAGTGAACCTTCTGAGTCACTCTCACCTGATGTCGATGGTTGTGTGTCACCATTTAAGGCACCAGCACCGAGTGTGTCGAGGGAGTTGGAACACTGTGCCAGCCTGACACGCATGCGTCAAGATAGCGCATCCATCAGTGACAAACACTTCACAGAGGAATGGCCACCACGGCAGCGCATCAAGAGTCAGGACAGTGACATGTCACCAACACCAGTTGACACAGCGGTGTCACCAGTTTCACTCGAGTCAATCACCAAGGCTCCGCTGTCACCATTAACACCGACACAGTTTCCGTGGTCACCAACTCCAATGGCCAAGAAGAAGGTTGGTTGGCCGTGGTCCCCTTCACCAATGCCTAAAGTGACCAGCCCTGATGGACCAGGATCTGACAGAGCCAAAGTAGTTCGGTCTCCTTCGCCAAGTTCCCAAAAACCTATGCTACAGTCTCCACCGACCAAAGGTCTCGCCAAAGAGCCGCAAACAGATACATCATTGGCCAGAGAGCCACGACTGGAAACAATTTTGGCTAAGGAGCCACAGTTGGCTACAGATGTAGTGACGGAACCGCGTATGACCACACTTACTGTTGACATCCACAAGACCGTGCCAACACCCGAAAACGCGGCAACGTGCGATCAGCTGCATGCAGAATGGCCACCTGGTAGCAGCCCTGGGACTGATGAGGAGCAGCCGAAGACGCCGATGTCACCTGCACGGAGGGGATACGAGCACTGA

Transcript

RPACG19519.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554	MatE	MatE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002528	Family	Multi antimicrobial extrusion protein	Interproscan
IPR045069	Family	Multidrug and toxic compound extrusion family, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015297	Molecular Function	antiporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0042910	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:1990961	Biological Process	xenobiotic detoxification by transmembrane export across the plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG19519.1 global RNA-seq network