Gene detail

Detailed information of RPACG19012.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG19012.1	SIGNAL RECOGNITION PARTICLE 72	tig00035042	993469	994792	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG19012.1

MVTSSASKYVLDFDIEGVDVSMYVLDCDIVGVDVCAEIVTSSASMYVLNCDIFGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYARDVTSSASMYVLDCDIVGVDTVTSSASKYVLDCDIVGVETVTSSASMYVLDCDIVGVEVYVLDCDIVGVDTVTSSVSMYVLDCDIVGVDVCATVTSSASMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVLTSSASMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVLDVTSSVSMYVLDCDIVGVDVCASCDIVGVDTVTSSASMYVLDCDIVGVSMYVLDCDIVGVDTVTSSASMYVLDCDIVGVSMYVLDCDIVGVEVYVLDCDIVGVDTVTSSVSMYVLDCDIVASMYMLDCDIVGVEVSMYVLDVTSSASMYVLDCDIVGVSMYVLDCDIVGVDTVTSSVSMYVLDCDIVGVEYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDVCASCDIVGVDTVTSSASMYVLDCDSSASKYVLDCDIVGVDTVTSSASKYVLDCDIVGVDTVTSSVSMYARDGDIVGVEYVLDCDIVGVDTVTSSVSMYVLDCDIVGVEYVLDCDIVGVDTVTSSASKYVLDCDIVGVDVCASVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSASMYVLDCDIVGVDVCARLCIVGVDTVTSSVSMYVLDCDIVGVDVCARLVTSSASMYVLDCDIVGVEYVLDCDIVGVDTVTSSASMYVLDCDIVGVEVSMYVLDCDIVGVEYVLDCDIVGVDTVTSSVSMYALDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVDVWLDGDIVGVEYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDCDIVGVETVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVETVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVEYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVDVCARCDIVGVEYVLDCDIVGVDTVTSSVSMYVLDCDIVVSMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVETVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVEYVLDCDIVGVDTVTSSASMYVLDCDIVVSMYARDGDIVGVDTVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSASMYVLDCDIVGVDVCEMVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVEYVLDCDIVGVDTVTSSVSMYGDVTSSASMYVLDCDIVGVDTVTSSVSMYVLDCDIVGVDVCANCDIVGVDTVTSSVSMYVLDCDIVGSKYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVRDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVGVDVCARCDIVGVEYVLDCDIVGVDTVTSSVSMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDCDIVGVDVCARCDIVGVDTVTSSASMYVLDCDIVGVEYVLDCDIVGGRYCDIVGVDVCASGDIVGSMYVLDCDIVGVDTVTSSVSMYVLDCDIVGVDVCATVTSSASMYVLDCDIVGVDTVTSSVSMYVLDCDIVGSMYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDTVTSSVSMYVLDCDIVGSMYVLDCDIVGVDTVTSSASMYVLDCDIVGSMYVLDCDIVGVDVSMYVLDVTSSASMYVLDCDIVGVETVTSSASMYVLDCDIVVSMYVLDCDIVGVDTVTSSVSMYVLDCDIVVSMYVLDCDIVGVDTVTSSASMYVLDCDIVGVEYVLDCDIVGVDVSMYVLDVTSSASMYVLDCDIVGVDTVTSSASMYVLDCDIVVSMYVLDCDIVGVDTVTSSASMYVLDVTSSVSMYVLDCDIVGVDTVTSSASKYVLDCDIVGVDTVTSSASMYVLDCDIVVSMYVLTVTSSASKYVLDCDIVGVDTVTSSVSMYVLDVTSSASMYVLDCDIVGVDNCDIVGVDVCETVTSSASMYVLDCDIVGVDTVTSSVSMYVLDCDIVASMYVLDCDIVGVDVSMYVLDCDIVGVDVCARCDIVASMYVLDCDIVASKYVLDCDIVGVDMVTSSASMYVLDCDIVASMYVLDCDIVGVDTVTSSVSMYVLDCDIVVSMYVLDCDIVGVEVSMYALDVTSSASMYVLDCDIVGVETVTSSVSMYVRDGDIVGVETVTSSVSMYADCDIVGVETVTSSVSMYALDVTSSASMYVLDCDIVGVDVSMYVLDCDIVGSMYVLDVTSSASMYVLDCDIVGVDVSLDCDIVGVDAGGHGSNKSNEFICRFTTFGTNGDYDRAIKVVNKILQELPDDETAFRCKMVCFIQLGKFEEALTAIRKNVKIASCVVFEKAYCEYRLNRTNEALKTLDASEKDDDRISELRGQVDGWCGLAEPMTLEATGWVVWAPEPMTLGATGWMVWAPEPVTLGATGSIDWRSMMNASIFTGSAKEHRHHDCTLRHLTDHDCTLRHLTDHDCTLRHLTDHDCTLRHLTDHDCTLRHITDHDCTLRHLTDHHYTLCHLTDHHCTSVISHTITALSIISQNITALSVISQTMSALSVISQTITALAIISQSMTALYVISQTITALFVISQTITALSVISQTITALFVISQTITALSVISQTITALSVISQTITALSVISQTITALSVIPPTMTALFVISQTITALFVISQTITALSVIS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026270	Family	Signal recognition particle, SRP72 subunit	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14094	SIGNAL RECOGNITION PARTICLE 72	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG19012.1 global RNA-seq network