Gene detail

Detailed information of RPACG18525.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG18525.1	ODD-SKIPPED - RELATED	tig00035028	1733230	1750735	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG18525.1

CGGATAGAAAATCATCGGTTTAATTCGCCCTAATTTATGTATTAAGGTCTTTTATAAATATTATTGTATCCATAATTAATGTAGGTGTAAGAGTAACGGATATTGATGGCTCTGTAGTTTTCCTTGATATGGGCGTGTATTGGCAAATACAAACTTTGCAATCACGCGGCTTGTTTGGCCCTTATTGAAATACTGGTCTCCGGCGATCGTATTCACTCACCCTGTTATCGACTTCTTCAATCAATGTTCCATTAAATTCAGTCGGGCCCTAATTCTAAATAGTAAATGAATCTAAAGCTAAAGTTGTATGAATTATGATACTGTATGAGAGTGTATCATGTGTCGGACCATATCTAATAGTTACTAGTAATACAGACAGAGACAAATATATACTTGTCTACAGTAACTTTCCTACACAGTGACTCGATACTGTTTGTTTAGATGGGTTCGTCTGATGGCTGACAGTGCCACTGGTGAAACACAGCTGTATGACCAGAACCGTATTTCTTTGAACGCTCTCATGTCAAACGACGACTACATGAAAGCTGAACTTGAAGCAGAGAATGAATTGCTACTGCTACAAGGCTTTGATGATGATGAATTGAGCATGTCAATCATGAATGATCATTGTGAACGATATATCAAACCTGAACCTGACAATGAACAGGTCAGCAGAGATACCCACAGAGAGTCGGTCAAACAGACTGACAGTAACCAGACTCCAGCAACAAAGACAAGCAACCAAGGTCAGACCGAGATCAAGAAAGTGCAGTTCACTGATGTGAAGATAGCAAATCACAGTGATATGCTCAAAGACGTGATGAACGATAAGATGCAGAAGACAGTCTTCTTGTATCCTGTGAGTCCTCAGGATATGAGTCACCCAACCATGAAGAACATCTGTAAAATGTGCGTTTCCTTCTCGGTCAACTTCCACATCAGTGAGATCGAAAACACCGACCAGATGATTGGTATATTGGTGATGAAGCTGCGCTATGTCGAGGGATACACATATCTTTTAGACAATGTGTTCAAAATTAACAAGGAATTGATTGTTGGAGCGAAAAACAAGAAAGTCAACCACTTCACAGACTTCTACTCCAAGTATGGACTGGAGACGGCCAAGAAGCCAGAACACAACGCCAGGGGTTACTTATATGTTGCCAATGTGCCTAGCTCAGCAACAGAAGAGGAACTCGAAGCACTGTTTCCAGGGGCGAAATTTGTCATCCTTGCTCGAGATGCCAATGGCCAACGTAAAGGCTATGCATACGTGAGCTACGATAACGAGGAAGTAGCGAAGGATGCCCTCTACAGTCAGCTGACGTTTCCCATGATGCTCCACCAGCACCAGTTGGTCGTGTTCTACTACAGCGACCCTGTCTCGCACAGGCGACAGGTTGGCATGAAGCTGCCCAGCAAGATGAAGCCACCAGTGCCATCTACGGTCACATCTAAAGCCCGACCAATGTCCGAGATGGAGAAGGAAAAACTCAAGAAACAGTTGCTAGAGCTGCGTCACGAGATCAACCAAGTCAGAGGTGTTAACGAAGGAAAGCGCCAGGAAATCGGGCGGAAAATGCAAACTATTGAGAGGAAGCTAGCGAGTGAGAAAACTTTACAACCACTGCAGCAGCAGAAATCACAGGAACGTTTGCAGGACAAACCTCCACGAAAACCACAGCAGGAACAGCCACAGAGGAGACCGCATGAGCGACCACAGCAGGAACAGCCACAGAGGAGACCACATGAGCGCCCACAGCAGGGGCCACAGATACGTGGACAGAGGAAACCGTTGGAACATCCGCGGCCACTGCCACAAGGCATGCCGCCACGATCACTGCTCCATGGCCAACCGGAACACTACCAACAGCCACCAATATTCCATGAACCACCTATGCACCGTGAACCACTGCCACAGCGAAGACCACAGCAGCTGCGTGGCGACGATCCAGCATGGATGCTACAAGGACACGGTGGTGGTGCTCTGAAAAGGAAGGCGGAGCCGCCTTGTATGGAGCACCCTATGTCGAGTTACGCAAGCAGTTACATTGCAATATATGGCAACGAGAAGCAGAACGCTTACAGTGAGGAGACAGATGCGCCCCCGGAGCGACAGCCGCGCTGGGATGAACCACAGCCACCCCAGGTACCCTCGCTTTTCAACCAGAACTACCTGGGTCGGCCGAACCACCCTCAGTACCCATTCCGACAGGATGATGGGTACATGTCGTACGAGAGGGAGCCACCAACAGATGGTGTTGGTATGGATGCTGTTAATCTACTGCTCGGTATCACAGAGGTTTTCAGGCAGCAGACAGAGATGCCTCACCCAATGCCAGGGCAATAACTATGATGAATGGCGAGGGACGGTACTAGCATTGGTAAGCGCAGATGTGTGCACTTCACAGACATAAAGACAAATATGAATCAATAGTCTTAAAAGTTAAACTACCCACACTGAAGCACTTTCTTGCATACTCAGCCAGATCAGTTGCACAACTGTGGTTGGTGTATCTGTAAATTACAGGCTTCCCGCAGTTCTAATGTTTTGTGCCATAAACATTTCACATATTTGTTAACATTTCTAATCATATTATTTCCAAATATTTTCTGATAACTAAAGATTTACTGTGATTTGTCTTTACCAAATTGCTTTTCTAGCCAAACCCGTCCTGTGAGTGTTTACTTATATGGCTGAGGATCAGATTCAAGTTGAACTGTTTTAACGTCATACCGGTAGCAAACTTTTTACGTTTTTAAACAAATGTGTAAATAAAAACTAAATTTTACATGGGAGTCTATGCCACTTTCACTACAAATGTAAACAAAGACTAGTAACAATAATTGGTGACTATGTAGTATACGTGATGCCCATAACGATTTGTTTGTATAGATTTTATGCAGGGAAAATCATAGAAGAGTGAAATTGAAGATATATGTATGCAAGCTGAACAACAGCTTCCAGCTGATGGTACTCAGTCTTGTAGTTCATTTCACAAAAGTCCCATGCTTAAGTTGTGTGACAGACAGAACAATCTGATGAACTGATAGTTAAGTCAACTGTTGGTGATGCACTTGTGATGAAAGTGACACAATAGAAAAGCTAAAATTTCCACGATGAGAGGAACTGAATTGTACTGGATATTGAAATAAAGTTTTTACCTGATCAACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF00055	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR008211	Domain	Laminin, N-terminal	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR050717	Family	C2H2-type Zinc-Finger Transcription Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14196	ODD-SKIPPED - RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001655	Biological Process	urogenital system development	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0009790	Biological Process	embryo development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG18525.1 global RNA-seq network