Gene detail

Detailed information of RPACG18397.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG18397.1	YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER	tig00035027	329078	367578	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG18397.1

ATGTCTATACCCACCCAGGTGGACAATGTGCGGCTGGTGGATCGCTACAACACACGCAAGCCGATTGTTGGCACACTTTATCTGACGGCCACTCACCTCATCTTTGTTGACCCCGCCGGCAAGAAAGAAACATGGGTGCTACACATGCACATCTCGTGTGCGGACAAGCTTCCTCTCACCACCTCTGGATGTCCGCTACAGATCCGCTGCAAGAACTTCCTCAACATCACCTTTGTGTTCCCACGGGAAAGGGACTGTCATGACATCCTCTCTTCCCTCCAGACCCTCTATCAGCCAGATCTCGGCGAGCTCTACGCCTTCCACTACATCTCCCCAGACATCCCTGACCGTCAGCAGGGCTGGAGTCTCTTTGACCTGCAGTCTGAGTATCTACGCATGGGAGTGTCCAGTGACCGCTGGACACTGACCAACATCAACAGGGAGTACGAGATATGTGACACGTACTCGCAGTACTTGTATGTGCCGACAGGCGTTCCAACCCCAGTGCTCATGGGCAGTGCACGGTTCCGCAGTCGCAGTCGACTGCCAGCGCTCTCCTACCTACACCGCGCCAACCAGGCCGCCCTGTGCCGTTGCAGTCAGCCGTTGGCAGGGTTCAGTGCTCGCTGCGTGGAAGACGAGCAGATGCTGCAGGCGATACGCCGAGCCAACCCAACATCAAAGTATATGTTTGTCATCGACACACGACCCAAGATTAATGCCATGGTGAATCGTGCTGCGGGAAAAGGCTATGAGAATGAAAGCTTCTATTCAAACATCAAGTTCCAGTTCTTTGGCATTGAGAACATTCATGTGATGCGAAGCAGTCTGCAGAAACTACTGGAAGTGTGTGAGTTGAAGAATCCATCAATGTCATCATTTCTGTCGGGGATAGAGAACAGTGGCTGGCTGAAGCACATCAAGTCTATCATGGACACCTCTGTCTTCATTGCCAAGACAATTGAGCAAGGCATCAGTGTGTTGGTACATTGTTCTGACGGCTGGGATCGAACTGCACAAACCTGTTCCTTGGCTTCCCTGCTTCTGGATCCCTACTACCGCAGGATAGAAGGTTTTCAGACACTCATTGAGAAGGAGTGGCTGTCATTTGGTCACAAGTTCATTGATCGCTGCGGCTTCCTTGGTACAGTCGATGCCCGCGAGGTGTCGCCAGTGTTCACACAGTTCCTCGACTGTGTCTGGCAACTGATGCAACAGTTTCCGAAGTCGTTTGAGTTCAACGAGCAATTCCTTCACATGTTACATGACCACGTGTTCTCCTGTCAGTTCGGCACATTCATTGGAAACTGCGAGAAAGACCGCATTGACCTTAGACTACATGAACGGACGTATTCTCTCTGGGCTCACCTCTCCAAGTACTCGAGTGACTTCCTCAATCCGTTCTACCAGCGAGACCTCGAGCTCTCTCACCCAGTGCTGCAGCCTGTCACCAACCCCCAGAGCTTTAGGTTCTGGCGAGGTCTCTACTGTCGCTTTGACAGTGGCATCCATCCGCGGGAGAACCTCTATGATGTTGTACGCGCACTCAAGGACCACACAAGTTCCTTGCAGGACCATTGTCAACTGCTTGAGAAGCGGATTGCAAGTCTGTGTAAGCTACTTGGGCGAGGGGAAGACCAGCTGCAGATTGCCATGCAGAATCTCAGCTCCTCCGAGTCAATGGACTTCCGTGCTCTCCTACTCAATGAGTCAAAAAAGTCGACGGAGGATGATGGCAACAACCAGCCCCCTCTGGCGGGCAAGAGAGGACCACACAGATGTGAGAGTGATGCGGAATCTGGTTTCGAGGATGGCGTGTCGTCAATGACGTCCAAGTCAATGAGTGATGTCACAATAGACTTGGATAATCTGCAGATCTACCATCTGTTGATGGAACTACAGTCAGTTGCAGTCGAGTGGAAGTCATTCCGCAAAGTACAAAGCTGCAGTTGTGCGATGCCGTTTGAGCATTTCACAAAGAAGTATCACTGCTGGTCTTGTGGTAACATCTACTGTACACGCTGCATTGACCGCATGATGGCGCTACCAGGTCACCTATCCCAGCAGGCCGTGCATGTGTGCAAGGCATGCTACAAGGACATGAAACATTCGCCGTCAGCATCAGTCAATGACCTGCAACAGTTGCAACGACAAACAGCGACACATTCCGACGCTGCTAGGACGACATCGGTGAACTCAGTATAG

Transcript

RPACG18397.1

CAAGTACTCGGATGTCTGTACACTTTGGGCTGCACTTATCTTCACTACCCAACTCACATGACCCAAAACTGGATCGGAACAAGCACCAAATCAGACCTGTATACATTGAGTTTATTTGGTGTCCCTGGTGCGGGGCACGGGCTATTTAGTGGCAGCTGGAGTGACTGTCATGTCTATACCCACCCAGGTGGACAATGTGCGGCTGGTGGATCGCTACAACACACGCAAGCCGATTGTTGGCACACTTTATCTGACGGCCACTCACCTCATCTTTGTTGACCCCGCCGGCAAGAAAGAAACATGGGTGCTACACATGCACATCTCGTGTGCGGACAAGCTTCCTCTCACCACCTCTGGATGTCCGCTACAGATCCGCTGCAAGAACTTCCTCAACATCACCTTTGTGTTCCCACGGGAAAGGGACTGTCATGACATCCTCTCTTCCCTCCAGACCCTCTATCAGCCAGATCTCGGCGAGCTCTACGCCTTCCACTACATCTCCCCAGACATCCCTGACCGTCAGCAGGGCTGGAGTCTCTTTGACCTGCAGTCTGAGTATCTACGCATGGGAGTGTCCAGTGACCGCTGGACACTGACCAACATCAACAGGGAGTACGAGATATGTGACACGTACTCGCAGTACTTGTATGTGCCGACAGGCGTTCCAACCCCAGTGCTCATGGGCAGTGCACGGTTCCGCAGTCGCAGTCGACTGCCAGCGCTCTCCTACCTACACCGCGCCAACCAGGCCGCCCTGTGCCGTTGCAGTCAGCCGTTGGCAGGGTTCAGTGCTCGCTGCGTGGAAGACGAGCAGATGCTGCAGGCGATACGCCGAGCCAACCCAACATCAAAGTATATGTTTGTCATCGACACACGACCCAAGATTAATGCCATGGTGAATCGTGCTGCGGGAAAAGGCTATGAGAATGAAAGCTTCTATTCAAACATCAAGTTCCAGTTCTTTGGCATTGAGAACATTCATGTGATGCGAAGCAGTCTGCAGAAACTACTGGAAGTGTGTGAGTTGAAGAATCCATCAATGTCATCATTTCTGTCGGGGATAGAGAACAGTGGCTGGCTGAAGCACATCAAGTCTATCATGGACACCTCTGTCTTCATTGCCAAGACAATTGAGCAAGGCATCAGTGTGTTGGTACATTGTTCTGACGGCTGGGATCGAACTGCACAAACCTGTTCCTTGGCTTCCCTGCTTCTGGATCCCTACTACCGCAGGATAGAAGGTTTTCAGACACTCATTGAGAAGGAGTGGCTGTCATTTGGTCACAAGTTCATTGATCGCTGCGGCTTCCTTGGTACAGTCGATGCCCGCGAGGTGTCGCCAGTGTTCACACAGTTCCTCGACTGTGTCTGGCAACTGATGCAACAGTTTCCGAAGTCGTTTGAGTTCAACGAGCAATTCCTTCACATGTTACATGACCACGTGTTCTCCTGTCAGTTCGGCACATTCATTGGAAACTGCGAGAAAGACCGCATTGACCTTAGACTACATGAACGGACGTATTCTCTCTGGGCTCACCTCTCCAAGTACTCGAGTGACTTCCTCAATCCGTTCTACCAGCGAGACCTCGAGCTCTCTCACCCAGTGCTGCAGCCTGTCACCAACCCCCAGAGCTTTAGGTTCTGGCGAGGTCTCTACTGTCGCTTTGACAGTGGCATCCATCCGCGGGAGAACCTCTATGATGTTGTACGCGCACTCAAGGACCACACAAGTTCCTTGCAGGACCATTGTCAACTGCTTGAGAAGCGGATTGCAAGTCTGTGTAAGCTACTTGGGCGAGGGGAAGACCAGCTGCAGATTGCCATGCAGAATCTCAGCTCCTCCGAGTCAATGGACTTCCGTGCTCTCCTACTCAATGAGTCAAAAAAGTCGACGGAGGATGATGGCAACAACCAGCCCCCTCTGGCGGGCAAGAGAGGACCACACAGATGTGAGAGTGATGCGGAATCTGGTTTCGAGGATGGCGTGTCGTCAATGACGTCCAAGTCAATGAGTGATGTCACAATAGACTTGGATAATCTGCAGATCTACCATCTGTTGATGGAACTACAGTCAGTTGCAGTCGAGTGGAAGTCATTCCGCAAAGTACAAAGCTGCAGTTGTGCGATGCCGTTTGAGCATTTCACAAAGAAGTATCACTGCTGGTCTTGTGGTAACATCTACTGTACACGCTGCATTGACCGCATGATGGCGCTACCAGGTCACCTATCCCAGCAGGCCGTGCATGTGTGCAAGGCATGCTACAAGGACATGAAACATTCGCCGTCAGCATCAGTCAATGACCTGCAACAGTTGCAACGACAAACAGCGACACATTCCGACGCTGCTAGGACGACATCGGTGAACTCAGTATAGATTCTCCACCATTTCGTGTAGACTCTCCAACACTAGGTGTAGACTCTCCAACACTGGGTGTAGACTCTCCAACAATTTGTGTAGACACTCCAACACTGCAGAGACAATGCGAGTGAACTCAGTCTTGACTCACCAGACACTTGACATATTACTTAATAATGACATTAGTAACTTATGACCTAAACTCTAATTTGTGTGTAAACACTCCAACACTGGCGTTAACACCAACACTTCAAGGATATCATCAGTATTTCTGTGTTGTCACTGCTCCCAACACCTCATAGAAGTCATCAGTCCACTGATTGGCTGAACAAATGGTACATATATCGGAGCTGCTTAGTGTCAACATCGAGTTCTTTGACTGCTTTCGCTGATGTGATGCTGACAAGTCGTTCATGGAGTTCTTACCAACAAGCGTTTTAGATTTCTTTTAAGTTATTTTGTAGAATAAGGCTATTTTGGCCCATCTCCTCTAGTCATATTTGTATAAAGTTGATTCAGTTTGGCTTGTCTTATTTCAGATTAATCTCAGATGTGATAGCTTATTTGTCAAGAAATTGTTATTTTGTCTCGATGAAATCTTTGGACAAACTACTAAGGTTGTTTACAGCCAACAAAACAGAAACATGGTCAATTCACTTCCGTATGTCGCTAACAGTTAATATTGATTCTTTCGGTGGCTTTAGGAATGATACAAGCTTCTATTAAACCACCTGTTGCAGTCAATACAGATTTGAAGTTTGTAAACCTGGTTCTGAAGAGGCTAACTGAACAAAACAGGCAATTTAATTTAATATGAATACTTAGCACATTAGTGTGGTTTAGTTTCTATGACTCATAGCAGGTGTAAATTTATTAATCCCTGATGTTTACTCAATTTTTTATCAGTTCAGTAGATTTTTGCAATGTATGGACTGATATATATTTCAATTATGATGCCAAAAGATATGTGTAGATATACAAATAAATGCTATTAATTGTATGTGTGTGTGTGTGTATAAATAACTCAAGATTATCTGACTTCTGATATCATGACACATTTGTGAGAAATTCCGATTTTAAATCGTCCTTTAAACACAACTCCAGTTTACATTCATGGTAGTTTTGAGTAAAACAAAATGTTCATGATATATGTAAAAAAATGTTTCATTTGGATCCTCTTCATATGTGTTGCAACCAATGATACTGTTAAACAGAGCGCACGGGAGAATGTGTACATTTCAGTTGAACAATTTGACGCATTTGTTCGACTTTGTAAACAGAATCTCTCTTACTTCGTGTTCACATTTGTTATTCAATTTGTGCACAGATCTTGTATAATTTAGAGTGCCATCAATGACAAGCAAGACACTATTGATTGCATCAGTTTTAGTACTTGCTGGTAGATTGCCAAGTGAAATTAACCTCAGCCAATAATGTAATTAGCAGCACTGTTTGGCTCGGTTTTGTTTTGCCTTACAATTGCTTGTATATGTACGAAGTGGAAGTAATTATTTGTGTACATAAAACTGCTCGGCCGTTGGTGCGAGTTGTCAAATAGATGACGATACAGGCTTTCCCTGATGCCCACTGGCGTAACAAGGCGCAGAGTTGTGTGTTTGATTCAGCTAACTTCCGTACATTGCATAGGATAACTGCCTAGGACAGGACATGTAATCACTGTACCAGACTTGCAAGGACGGTGTTAAGCAGTAGATTGTGTTACCTTAGGGACTGTTTTTGCTGTTTAGTTGCTTCAGGAAAGGTTGTAAAAGAAGCAGGCTTTCTCTGCCTTTGTGTATTTAATGTTTTACAGTTTGTAGTCAAGATAATGTTTTTAATTGTACATATATTTAAACCATGACATGTCAGTGTAATAACTTCCTTTGTCATTATGTTGTACGAATTTGAAAATGTCCTAAAGCTATTTGGATATGACTTGTCGCAAACTGTGATAGTTTTGTCTTGGATCAAGTAGTCGTATAGCGGTTACATATATATGTATTATTAAAAGCAAAACCGAATTTCGGTTTTCAACTGCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR051583	Family	Yes-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17616	YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035329	Biological Process	hippo signaling	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG18397.1 global RNA-seq network