Gene detail

Detailed information of RPACG18325.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG18325.1	NUCLEAR RECEPTOR COACTIVATOR	tig00035025	1398472	1399591	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG18325.1

MEDLAQLISGSIGDMSQLSTSVKPDKCTILQDTINQLDRQKQEESGVRCHSDAVQQSQVSSSKPTLLANNVLGPLLLEALNGFLFVVNSQGKVEFVSENVSQFLKFTQDDLVGKNIYNYIHNGDRTKFSSILLPMSLGKNLSWPANENAASKQNRTFNCHMLVKPQVDEQEGVEPKPHQMAQYENMQISAVVQPHLADKDADSSSIDAESQSCLVCTARRINLPEKNVAMLGVEQFTTKQDLHGKIIDCDTSGINPGSFTYPDFNGKNIQEFCHVNDVQQLVRHHQEVLNNGTNTSGVYRFKLQENRYVFVQTKSKLFNNPTTGKPEIIFSTHCIVRECDADTELKGSASTSLMKSIIGQSGPKNRTLLQPLIGSPKAMPTAMVLPNNAVMSQSSLGGSLGTNVDMLLHSTAPSCGGSTSCIDLDADEINLNDVLSLFPDGWDTAIMQEVGVNKVPMTTDTSLDHVTQNKAGAVATATSQCLVDRVNVHNRMLGANKAPGSPRYLGQRSPRFLAQCSPGMNANTMLAVSQLQRTISQAGNVPSGGVGSGLVGLARMMSPKQQVNSGAVARSMSCSSVSSEDDLSFLFSSSPSGCGGQMGVKMGMMAGGESVAMLKHKQQELHQGNPDASWEQQLLMDQLRQLHQQQQQQQQQQQQQQQQQQLQQLQQQQPNTTKMESEKNTKLLHLLTRKTSESAPQRQQLQQQQQQNQQLRHQQLQQQQQQQMQRQLQQLQQQQLGSSLVDGDMLSSSQKPVNKDMSPPTNAGIGQRPEVTGGQLSSPDQQPQSTSVDERPDSSSKDITVSVPVTMPISMQKAKNDNRILKQLLSQEDEDDEAETDVVTATTVATTTATTTTTSMSSDSTLDDANVSLEKNEAEPKKMDNALLKQLLNEDHGNASDNSKEQRQQHNKLLQRLLGEERDIKHSSADTPVESTSNGTVKSKDSVMSSSQFTGDLADDSSLSRFLNESLPQSLTSPTSAAMATPFSSADKLATMSDEKLDSFLSSLWDKQTKEERPVGGIKRKASDEGVVGSTDSADSELQTGGSANKPSQRNVLLAKLLSKRAATEAVVNPRAVSVMSVPHPLLQVPRPTSQNGGSVQATELPKMSSGPVQKPTAWDNPRTDPNSPFPGNTKDNPGLGMPNTLSANPNLNANLTDVMANTAMSSSNLMEALGGMTAMTDSMPMSGSGSGGVSSTTGPRSLRQSVLTPCSNSDPLLSDILQEASELQNDINMRHMGSTAGPTEGGSVPEDMFDQIEQVMSSFPLPDFDNLLGPFGGSGAGSQGDAVAPQPFQRTVDINEQMAINAIQQQLMSAETSPHGGNTVPMQQIGVNTQLSPHAMLGGASGAMTSPMTSPQGPVDQQQSIANMEQQLRQQLQGAAHSPHGVQQLQGAHSPHGAVVSQQLQGAHSPHGVMPQQMQGAHSPHGAVHPRPNMLPSHTTRFVQPQGMTQGSTAQMNFNLVNQQKGMLSAQVRKTLLAQQLNKQRQRQLHEQQQQQQPSQQSPASQQAFRQFSPQGNYARPSGGIVENFGELMNTSMAPNVSLQRNQSLPGPMSPRFQQGVPGQAAPAVPPLSAPPTQQNLAPMLRAGNVQQRMGQLGGTTTQPQWRPRTNPAMMNGGAMAQASHFGNIPMSAGSTGGTAAATKPQDPKPFPFNDASQFGSGPSPLPGMMGNHPQQQKSPLGQQQQMQQQQQLQQQQLQQQQQQQQQQQNCTLQARQMFGAVMQGGLRTSPHPGQHSPFGVPPDHDPMLLSPQQKLSPTGHISSQMNTQGLVSPGTSFSPQTNMTAAQQQRPMHLPVNSQQGYGIRQSPLGFNQEMVFQQGALQSPGSMPVPPGAAKQQLLQSPGGTMPGVMQTPGGRVQHHDGNKLQPESKSQFVKQEIRAFCSARSLQNPHQVSPQQAPQQPASDLEFDETSSELPYDILESISELTRSQGQSMSLEGAMQGASSQPMSQQQAQPPHKVSIMSQENIVMQKKAEGRRRCEQLRQLSIGGSVQNEMHASNMFRSQLMNPGSQQVPQQQQQQQQQQQQQQPQQKKCDMTSGVNISTKCDTPAVNIVQPEPRAPLDEMRLPDQIQKNSLLQQLLSEPD

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989	PAS	PAS fold	Domain	Interproscan
PF14598	PAS_11	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR017426	Family	Nuclear receptor coactivator	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10684	NUCLEAR RECEPTOR COACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016922	Molecular Function	nuclear receptor binding	Interproscan
GO:0030374	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0032870	Biological Process	cellular response to hormone stimulus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG18325.1 global RNA-seq network