Gene detail

Detailed information of RPACG18139.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG18139.1	GRPE PROTEIN	tig00035019	1515060	1532797	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG18139.1

ATGGCTGTTCCAGGCGGTGGAAACGCTCCAGTGGATCAGCGGCTGGCAGCAGTTCATGCCGCCATCTTGAATGATGACGCCGAACAGTTGGCCGAGGTTTGCTCGTCGGGAGTGGAACTCAACCAGATGTTCACGGCTGAGATCAACCAACATCACGTCAGTATGACGCCGATAGCCGTCGCCTGCGCCCTCGACAAGACAGTTCTGGTCGAGGTGCTGCTGGCACACGGTGCCCAAGTCGACTTTCCTTTCGCGTCTCTGAACACGACGCCCTTGATGACGTCAGCTTTCCACGGCAACATCGAGCCTGTGACCTTGTTGTTGAAGAACGGTGCCAACGTGCGCGCGCTGGACCAGCAGAAGAGCACAGCATTGGGCTACGCCTTTGGAGGCACGCGCAACCTGGACGTCATTCAGCTGCTGCTAAACGCCGGCGTCGACGCAAACTGTAAGAATGTGCTTGGCATGAGCGCCATGCTGCTCGTCGCTGGCTACGGCAACGACGAGCTCGTCGCCATGGTGCTTGACGCCGGTGGAGAACCTCGCGCGCGCAACGACTTCGGCCACACGGCGCTGCACCTCGCCGTCAACGGCAAGAAGGAACAACTGAAGAAAATGAAGCGGCTTGGCTCGATCGAGGCTGCCGCCGCAGACCGTTCGCTCAACCGGCGCAATCTCGACCTCGCCATGCAGGAATGGGCGCGGCTGCACCGGGAGGCTGTCGGGGAGACGGGCGACCAGGAGTCGCTGGCCAAGGTGGGCCAGTTTATGATGAGCATTGGTCAGAACCTGGAAGACGACGAAAATGCGGTCGATGACAACGATGACCAGGAGGCGATGAAGCGACGAGTGGCGGCCGTCTGGAAGCACCGTCAGGAAAAGATACGACGCGCCAAGGAGAAGCGACGTCCGGCCTTCCTCGCCACGCTACTTTCGTGTGGTGGCGGTAAGAGTCGCCAGGCGGCCGACACGGACGCCGCCTCGCGACCGTACACGGTACCAGTCGAGAATGACGTTACCAACACACAGCTGGACCCCAACAGCGAGGTGAGCCAACTCTCAGAGAGGTTCGCGCGAATCCTGCGCATGCTCATCGACGCAAAGTGCGAGATCGACGAGACGGAGCGGGCGTTCGGTATGACGGCGCTCGACATGGCCATCCTCAACGGCGACGTTGAGTCGTCAGCTGTGCTTGTCTCGGCGGGTGGCGACCCCGATCACCTGACGAAAACGTTCGCTCTGTCAGACCTCTACGAGGTGCTTGTTCGCCCGCAGCGCAAGGGACTCAAGGACCTCTTGCTCTACGACGAAGACGTTGACGTCAACCAGCCATTTTCCCGCTACAATATAACACGACGCCATTCGCCAGACGGCGCTGCTGCCAACACAACAGACGAAGGACTAACTCCGGTCACGGTCGCCGTCAGAAACAACGATCTGAACGCTGTCAAGATGCTGATAAGTCATGGCGCCAATGTGAACGAGATGGGCCCCGGAGAACGTTCACCCCTAGGGGAGGCTGCTGCGAATAACAACCGCAAGGTGGCGGAGATCCTGGTACAAAATGGCGCCAACATCGAAGATCCTATTCCTGCCTACAACAACGCCACGCCGGTAGTTGTCGCCGCCTTCATGGGAAGCCATAATGTAGTCGATCTCTTAATCAGGCGGAACGCAAAGGTTGACACGCCAATGCAGGACGGCACGACGTCGCTGGTGAAGGCGTTCACTGCCAGAGACATGGAAATGGTCCATAGGCTGCTGCGAGCTGATCTCAACAACAATTTCGAGGACCCCGACGGGAAGATGCATCAATTGGCAGTCGCGTACCAGGATAAGGAACGAGGCGTCGAGACAATCCTCGAGGACGTGTCAAACTGGGCGAAGGAGATCGAGCCCGTTGAAGACGCCGCGACACCCACCGCCTTCTCACCAAAACCCATTGACTTAGACTCGAACGCTAACACACCAGCCAGACCAGCGCCTCCGCCGCCAGACATGACACTGCCCCAGCGAGAGCTCTTCAAGCCGGAGCCGTACGCCGCGGAATCAACAGAGCCGGGGCGTCCGCGGTACGCCGAGCAGCCACAGCCAGCGCAGCAGCCAGCGCAACAGCAGCCACAGCAGCCAGCGCCACAGCAGCCAGCGCCACAGCAGCCAGCGCTACAGCAGCCAGCGCCACAGCAGCCAGGAGAGCTGGTGACTGCGCCAACCTACACACGCGAGCAACCTGCGGACCAACCTACTGAGGACGCACACGACGGCCGGCCAGTAGTGATGCCTGTCCAGATTGTACCAGTCGCTGGGGAAGAATACATGCAACAACCGCCGGCGGAGGCCGTCCGTATTCAACAGCCACCTGCGGCAGAGATTCAGTTGGTTAGGCAGCCAGCCGCAGGGGAAGTGCAGGAAATTCGACAGCCGCCGGCGGGTGAAGTGCAGGAAATTCGACAGCCAGGAGCCGGTGAGGTTCAAATTCGACAGCCGCCGGCGGGTGAAATGCAACAACCGGAACAGCCGAGGTTGTCGACGTTTGCAGTGCCGCTACCGCAAGTCCAGCTGCAGCAACAGTTCGCAGAACAAGTGAACGGTGGACAAGACGACGACGACGACGACGATGAGGAGGAGGAATCGTCGGAAGAAGAATCGTCGGAAGACGACGACGATGAAGAGGAGGAAGAGGAGGAGCCAAACGCGGACGTTTGCGGAGGCCCCGTGAGATTGCAGCAGGACACCGTGCAGACGACGACGATTACGAAACAGCAGTTCGTCACATTTACCGAACAAACACCGCAGTCCCCTCCGCCTCCCTTGCCTACCAACGGGCCACCGCAGGAAGAAGACAAACCTGCTTCCCGCATTCCCGTCGCCAAGACACCCCCTGGGACGGTGATGACGACGCAGACCGTCCGTACGACCACCGTGACGATGACGGCGCCTGGTCCCGTGCCTACGGCCGTTATGGAGGACATCCCTGACATCGATGACGAATCGGACGAAGAAGATCCCCTGCCGTCAGGTAGAGCCACCAAACCGGCAGAAGCACCCGCCGGTGGTTCGAGCAAGGAAACGACGTTATAG

Transcript

RPACG18139.1

GGTATACCGCGCGCAGTACAGGTGGGCCAACGGACAGACGAACGGTGACAGAGCAGTGTCGTTGTAAGCTCGTGAGGTCAGCCGGTCGCTAACGGACCACCGAACATCGCCACGTTACACACGCATGCCGACGCGGGTTTCTCGAAGGATATGACAACAGTTGCAGCCGACTGATCTGCTTTGCAATCGACGTCGAACAGGAAACTATGGCTGTTCCAGGCGGTGGAAACGCTCCAGTGGATCAGCGGCTGGCAGCAGTTCATGCCGCCATCTTGAATGATGACGCCGAACAGTTGGCCGAGGTTTGCTCGTCGGGAGTGGAACTCAACCAGATGTTCACGGCTGAGATCAACCAACATCACGTCAGTATGACGCCGATAGCCGTCGCCTGCGCCCTCGACAAGACAGTTCTGGTCGAGGTGCTGCTGGCACACGGTGCCCAAGTCGACTTTCCTTTCGCGTCTCTGAACACGACGCCCTTGATGACGTCAGCTTTCCACGGCAACATCGAGCCTGTGACCTTGTTGTTGAAGAACGGTGCCAACGTGCGCGCGCTGGACCAGCAGAAGAGCACAGCATTGGGCTACGCCTTTGGAGGCACGCGCAACCTGGACGTCATTCAGCTGCTGCTAAACGCCGGCGTCGACGCAAACTGTAAGAATGTGCTTGGCATGAGCGCCATGCTGCTCGTCGCTGGCTACGGCAACGACGAGCTCGTCGCCATGGTGCTTGACGCCGGTGGAGAACCTCGCGCGCGCAACGACTTCGGCCACACGGCGCTGCACCTCGCCGTCAACGGCAAGAAGGAACAACTGAAGAAAATGAAGCGGCTTGGCTCGATCGAGGCTGCCGCCGCAGACCGTTCGCTCAACCGGCGCAATCTCGACCTCGCCATGCAGGAATGGGCGCGGCTGCACCGGGAGGCTGTCGGGGAGACGGGCGACCAGGAGTCGCTGGCCAAGGTGGGCCAGTTTATGATGAGCATTGGTCAGAACCTGGAAGACGACGAAAATGCGGTCGATGACAACGATGACCAGGAGGCGATGAAGCGACGAGTGGCGGCCGTCTGGAAGCACCGTCAGGAAAAGATACGACGCGCCAAGGAGAAGCGACGTCCGGCCTTCCTCGCCACGCTACTTTCGTGTGGTGGCGGTAAGAGTCGCCAGGCGGCCGACACGGACGCCGCCTCGCGACCGTACACGGTACCAGTCGAGAATGACGTTACCAACACACAGCTGGACCCCAACAGCGAGGTGAGCCAACTCTCAGAGAGGTTCGCGCGAATCCTGCGCATGCTCATCGACGCAAAGTGCGAGATCGACGAGACGGAGCGGGCGTTCGGTATGACGGCGCTCGACATGGCCATCCTCAACGGCGACGTTGAGTCGTCAGCTGTGCTTGTCTCGGCGGGTGGCGACCCCGATCACCTGACGAAAACGTTCGCTCTGTCAGACCTCTACGAGGTGCTTGTTCGCCCGCAGCGCAAGGGACTCAAGGACCTCTTGCTCTACGACGAAGACGTTGACGTCAACCAGCCATTTTCCCGCTACAATATAACACGACGCCATTCGCCAGACGGCGCTGCTGCCAACACAACAGACGAAGGACTAACTCCGGTCACGGTCGCCGTCAGAAACAACGATCTGAACGCTGTCAAGATGCTGATAAGTCATGGCGCCAATGTGAACGAGATGGGCCCCGGAGAACGTTCACCCCTAGGGGAGGCTGCTGCGAATAACAACCGCAAGGTGGCGGAGATCCTGGTACAAAATGGCGCCAACATCGAAGATCCTATTCCTGCCTACAACAACGCCACGCCGGTAGTTGTCGCCGCCTTCATGGGAAGCCATAATGTAGTCGATCTCTTAATCAGGCGGAACGCAAAGGTTGACACGCCAATGCAGGACGGCACGACGTCGCTGGTGAAGGCGTTCACTGCCAGAGACATGGAAATGGTCCATAGGCTGCTGCGAGCTGATCTCAACAACAATTTCGAGGACCCCGACGGGAAGATGCATCAATTGGCAGTCGCGTACCAGGATAAGGAACGAGGCGTCGAGACAATCCTCGAGGACGTGTCAAACTGGGCGAAGGAGATCGAGCCCGTTGAAGACGCCGCGACACCCACCGCCTTCTCACCAAAACCCATTGACTTAGACTCGAACGCTAACACACCAGCCAGACCAGCGCCTCCGCCGCCAGACATGACACTGCCCCAGCGAGAGCTCTTCAAGCCGGAGCCGTACGCCGCGGAATCAACAGAGCCGGGGCGTCCGCGGTACGCCGAGCAGCCACAGCCAGCGCAGCAGCCAGCGCAACAGCAGCCACAGCAGCCAGCGCCACAGCAGCCAGCGCCACAGCAGCCAGCGCTACAGCAGCCAGCGCCACAGCAGCCAGGAGAGCTGGTGACTGCGCCAACCTACACACGCGAGCAACCTGCGGACCAACCTACTGAGGACGCACACGACGGCCGGCCAGTAGTGATGCCTGTCCAGATTGTACCAGTCGCTGGGGAAGAATACATGCAACAACCGCCGGCGGAGGCCGTCCGTATTCAACAGCCACCTGCGGCAGAGATTCAGTTGGTTAGGCAGCCAGCCGCAGGGGAAGTGCAGGAAATTCGACAGCCGCCGGCGGGTGAAGTGCAGGAAATTCGACAGCCAGGAGCCGGTGAGGTTCAAATTCGACAGCCGCCGGCGGGTGAAATGCAACAACCGGAACAGCCGAGGTTGTCGACGTTTGCAGTGCCGCTACCGCAAGTCCAGCTGCAGCAACAGTTCGCAGAACAAGTGAACGGTGGACAAGACGACGACGACGACGACGATGAGGAGGAGGAATCGTCGGAAGAAGAATCGTCGGAAGACGACGACGATGAAGAGGAGGAAGAGGAGGAGCCAAACGCGGACGTTTGCGGAGGCCCCGTGAGATTGCAGCAGGACACCGTGCAGACGACGACGATTACGAAACAGCAGTTCGTCACATTTACCGAACAAACACCGCAGTCCCCTCCGCCTCCCTTGCCTACCAACGGGCCACCGCAGGAAGAAGACAAACCTGCTTCCCGCATTCCCGTCGCCAAGACACCCCCTGGGACGGTGATGACGACGCAGACCGTCCGTACGACCACCGTGACGATGACGGCGCCTGGTCCCGTGCCTACGGCCGTTATGGAGGACATCCCTGACATCGATGACGAATCGGACGAAGAAGATCCCCTGCCGTCAGGTAGAGCCACCAAACCGGCAGAAGCACCCGCCGGTGGTTCGAGCAAGGAAACGACGTTATAGCGACGCCATTCTGGATCGCTGCATCCAATACCAGCGTCCTACTTTTACAGGGGAGATACTACGAGAACTAGCATACTACACTGCATAGAAGCACCCTTTTCGTGACGACTTCGGGTAGTTTGTGAGAAGTGACGACGACTCTCGATAACTACCGTTGCACATTCGGCGACAACTATGTATGAGGACCAATACGTTCGTCATATCAATTTGCCTAGCTTCCCGCGAACGATGAGATAGGCGATGTAAATATCGCCGACAATCCTGTTGTCGCTTCATTTGACAATCACCGCGTCGGGGCTAGATACCGGTAGCTGCGGAGGACGTACGATGCAAAGATCGATAAGCGTGTATTGTTCCCGCCAACCGATTCCGGTCCGGCGGGAATTGTGTAAACTAATCGTGTTGTCAACTTGTTGTTTGTTTGGTGGAGGCGCATGCTCGGAAATTTATGTGCATAGCTAACGTTAGTTTTACTGGACATTTGATACTGCCGATTTGTATTGATCAATGTGCTGTCGTTTCTAGTTATGTCGTAGGGTATACTCTAGATTTTTAAAACACTCGTACGTCGGGTTGTCTGGTTTTTTTATAAGTCGTCGGTTTTTATTTAGCGTACTTAAATGTTTTAAAACGAATGCCGTTTTTAGTTGCGGAGTACATCAATTTTGAGGCATCAATAAAATGTGAGTGATACGGTTTGGCGTGTATCTTTGCGTTTCCCAACTGTGATGAAGCAAGGTGGTTGTGTATGTTTAGTTGTTCTAAGGAAAGGCGAAGTTGTGAGCTTGCGAATTCCTTAAAGTGGGCGGGGTAGTAGGACAGCGTAATGTTACTCTTTTAAATTCCCTAGAGAAGGCGACGCGGTGGAACTGCTTGGACTGAATTGGTTCAGTTTGCCGCAGTGAACGACGCGGTGATGGTGTTTGTGTTTGGGTTTCCGTTCTGTCAAAGAGGGCCAGTGTCTGCCGTTACTCAGGCTTTATCGTTTGTTTTTCTCTCCAGAGAAATCAATACGTTGGTAGTGCTTATGCGTAATTGTTCTTCTTTCAAATTGAACGCGGGACTGTGATGCTGGTTGGACTACGTTATTTCAGTTCCCATCTGAGGACGACGCTACCAAGTTGGATGGGCTTAATTTGTCCTGTTCCCCAGAGAAAGCTAGGTTATGTCATTGCTAGGACTAATTTATTTCTCTTCCACAAGAAAGACGAGACTGGTGTTGCTTTGACTGAATTGTGTGGTGACGTCAAGGGTGTGGTGACGACAAGGGTGTGGAGACGACAAGGGTGTGGTGACGACAAGGGTGTGGTGACGACAAGGGTGTGGTGACGACATCCAAACTTGTCAACGTAGACTTGTCAATATAATTTGATTTTAAAAACGTGATATGGTCAGGGATGCGTTTATTAAAGCAATATGCCTGCTGCTAACACCAGAGCCAATCACTTGTTAGTAATATAATTTTAATACAAAATTGTAACATAATAATTATTACATAAAGAATGAGTTGCGAAGTTATAACTTATTCACTTTAATTAATTAATTACTTGACACTAACATAAGGCATCAGACAACACAATAGACTAAAATAACTGTTATGTTGTTGACAATACTTTTTAACGTCAATAAACAAATAATTGATCATAGACACGTTCAGTTTATGTCCACAATATGTGGCGGATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01025	GrpE	GrpE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000740	Family	GrpE nucleotide exchange factor	Interproscan
IPR009012	Homologous_superfamily	GrpE nucleotide exchange factor, head	Interproscan
IPR013805	Homologous_superfamily	GrpE nucleotide exchange factor, coiled-coil	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21237	GRPE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000774	Molecular Function	adenyl-nucleotide exchange factor activity	Interproscan
GO:0001405	Cellular Component	PAM complex, Tim23 associated import motor	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0030150	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0042803	Molecular Function	protein homodimerization activity	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG18139.1 global RNA-seq network