Gene detail

Detailed information of RPACG17959.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG17959.1	EGF-LIKE DOMAIN-CONTAINING PROTEIN	tig00035018	18228	46323	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG17959.1

GTGAAAATGGCGGAGTTGCAGGCGAAAGCCCTCTTTGGCTTCACCAGTGGGGCAGAAGGAGAGCTTTCTTTCGGGGACAACGAAATACTGACGATCACAAGACAGGATATAGGCGAGGGATGGTGGGAAGCCGTGAACTACCGCGGAGAGAAGGGGCTTGTGCCAGAGGCATACCTAGAGATCACATCTTTCCCTGAGCCTAATATCCCTCCTCCGCCAGTCCCGGAGGTTGTGGCTCAGCCTTGGAGCCAACCCCAGGAGCCTGAGATTGCACAACAGAAGGTGCCACCTACGCGACCATGGCAACCCCCGGTACAGACGAACCACAATGACAGGGGTGCTGTGACGAAACAAGAAAGTTATGAAGATTGGGACGATGACGATGACTGGGACGATGACGATGACGATGACGATTCAAGTGTCAATACCGAGATGTCGGAGCAACACAGGGGAGGTTACAATAAGTCGGAGGCGATGAGACAACGCGCAGGCAGCACCAGCTCTGATGTGCATAACAAGCACGGCACAGTCAGGAAGTTTGGCAGGTTTTCAGGTTTTGCCAAGCAGGGAGGAGAAGCCTACTTGTTTGACACAACCTTGACCCCGCCAGTTGATCCTTCCATCATTGTCACAGTTATGGAGACGGCAGATGGGCCATGCTGGCAGCCCCCCGCTGAACCATTCACGTGTGAAATCAAGTCTCCAAAGAAGGAGAGCAAATACCACGGCATGAAGAGCTTCATTGCCTACCAGCTCACGCCTACATTTAATAACATCCAAGTGAGTCGGCGGTACAAACATTTTGATTGGTTACACGATCGACTCGAGGAGAAGTTTACAACTCTTGCGATTCCACCTCTGCCAGACAAACAAGTCACAGGTCGCTACGAAGAAGACTTCATCAGTCAGCGGATGCAGCAACTACGACAGTGGATTGAGAGGATGTGTCTACATCCTGTCGTCTCCCAGTCCGACGTCTTCAAACACTTCATGTCAGTCACAGAAGAAAAGAAATGGAAGGCGGGAAAAAGGAGGGCGGAAAAGGACGAGTACCGAGGGGCCAAGTTCTTCTTAACTGTCGCGTGTCCATCAACGCCGCCGGATCCCAAGTTACTAGAATTGCAAATGGATCGATTTGGTCGATTTATAAAAAGCATGGATGACAGTGTCCGTCAGATGTCAACTACCGGGGAACAAAATATTAAAAGGCGTCGAGGGCCTTTTAGAAAAGATTTCCAGAAGTTTGGTGGAAGCCTGATTTGCTTGGCAAAATCTTTCGAATTTGACGAGAGGCTTGCTTCTCAAAACCTGACACAAGCCATAGCACAGACAGGTAGCACATACGAAGACATTGCTCAGATGATACAGCAACAGCCAAGAGTAGACATGTATCCTCTTTTGGAGGGCTTACATGAATACAGGGGCCTGCTGTCAACGTTTCCAGAAATCTTGTCTGTTCATCGAACAGCGACACAGAAGATTCAGGAGCAGGGAGGGAAGTTGGAAGACCTTGAGATAGCAACAGCTCAGGCGCGATCGGACGTCATCGCGTATGCCACGCTCGCAGAGATGAACCACTTCCAACAGTGCAGGGTAACAGACTTCAAAAACATGATGCAGAGCTACCTGCAAGAACAGATTGGCTTCTACCAACAGGTCACTCAGAAACTGCAGGCTGCATTGCAGCAGTTTGATAACGCGTGACCCAGCGACATGGCCGTGAACCATGACCCAAGAGTGTGACACTAGACAAGCAAAGACAGCAATGCATCTCAGCCCACTGGGTGTCCCTGTCCCCCCTCTATGTGCCTTCTGATGTCATCGTACCCATGGGTCCGGGGTGGCTCCAGGTTGGACCCATCCCATGTCATTCGTTGATGGGGATGGTATACTCCAAAAGACCAACTTGAATCGTGGTGTTGGTACTGCCATCGGTATGTCTGTGTGGGTGCGTGCGTGTGTGTATGGGTGTATGTCTGTGTGGGTGCATGCGTGTGTGTATAGGTGTATGTCTGTGTGGGTGCATGTGTGTGTGTATGGGTGTGTGGGTGTGTGGATGTGAAAAGCATAGTCTCAGATTCGTCATTGTTTTCTATTTGAGCAAATGTGTTGGCTCTGTCAGTGGTTTAAGAGGCACAATTTCATATTTGTGGATATCAATTTCTCCATTTTGCTGTATATTCACTCAGACTGTATGCACACAAATACACACAAGCACACATACACACACGCACACACAACATGCATTCTGGTTTCATACCTGATTTACAGTCAGCATTTCACTGGCGATATAATTTCAGCATATATTGTAAAATAAAAACAGTACTCGTTAAGTGGCTGTTGTTATTTAGTTTGCAAGACCATACTTTCCTGAAGTAAGAACTAACCAGTGTCAGTATGAAGCAACAGTTGTTCTATGTGAAACTTGGAATCTTTATGTGAACAGGCAATGGTTTGAACATGAGTGATTTTATTTTATGAAAAGGTTGATAGTTTCTAACACTCGGTACATGTGAATTTGAACATTTTACTTGGTAAAGTGTTTTGTGAGTTGTCAATAAGTAGTACTCAGTGATAAAAACTGCATATTTGGTTGTAAGCATAACATAAATATATACATCTGTACAATAAGGATTAAAAATGATATCTAGCACCGGGTAATGAGCAAAGAAATATAATTGTTTACTAGAATTTATTTTTTCACAAGAAGCACCAATCGGCAGGCTATGTCAAAGCATCGACTGGGGTATCTTATTTTTACTGGGTTACTTGACTTTGGTTCTGTTGAACATTTACATGTATCTGGTGCAATTGTGTAATATAGTCTTAACTGCTAGTGATTTCTAACGGAATATGGAATCCTGGTTTTAGTGTGCCGACTGCTGTGCAGTTTAGCATGGTAGTGTGATAGGATTTATATAAATTGATTACTATGGACATATTAGTACTGCTATATGCATGTACATATATTTATATTATGTAAGTTCAATGCTTGCCTCTCCTCTATTTCCTAAACATGCATTGCAATGCTGTATAACTTTTGCGGTGCATCTGACTTGTCAGTCGAGAAGGTCTGAATTTCAGTTCTCATGCTGTTGATCTGAAATGTTGGCAAGTTTGTTCCCTCCACATTGCTCTAGTTCAACCAGCTGTATGACTGAGTACCTGGCTATAGACAATATTTGTGTAACTATTTGCTTGGTAATTGCAGCATGACAGAGTGCTTTACAGAGAAGTTAAGATGGTATTCAGCTGAGCAGGGACTGGTGTGTAAGCTGCTTTGAGCAGTTCTACCTTACAACTGGATGTGGCAGTATATAAGAACTTACCTTTATTTTATTTCTTCCCTGATATATGCTGCATAAATATATAGTAAATATGTATCAGGGTACTTTGAACGACTGCGTCTGAGGTAGATTCTGTTGCATTCTGGTTTACTTTGCGAGAGTAACAATTGCATTTGTGTCGTTGTGATGCTGCCACATCAGCCTTATTGCTAGCAGCTAGAGGCAGACATTGGATGAGGTCATAGGTTAAACGTGACATCACATATGAAATGTAAAGTCAGAAGTTAATTGTGAGATCACATCTGAGCTGTACTAGGAAGTCATGTGAGGTGCCAGCAGAAAACATATCTAACAGCAGAAAAAAGTTAAATATTAATAAAATTTGTGGACATTATTAATAAAATTTATATCATATGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF05345	He_PIG	Putative Ig domain	Domain	Interproscan
PF06119	NIDO	Nidogen-like	Family	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001846	Domain	von Willebrand factor, type D domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003886	Domain	NIDO domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR005533	Domain	AMOP domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR050751	Family	Extracellular matrix structural protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG17959.1 global RNA-seq network