Gene detail

Detailed information of RPACG17333.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG17333.1	GREMLIN 1	tig00035010	559952	574588	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG17333.1

CAAGCGTTCGCCGCGGCCCGTTCTGAAACCATCCTCGCGAGTGTACGTACGCCGCCGTGTCGAGCTCTGTCTGCCTCTGTCTCTCTCCCGTCTCCCGTGCACGACACACACCCGCGGATTACGCGTCCTTCTCCTGCAGATCCTTCCGAACGCCTTCACATAAGCAACCATGGGAGAGCGCGCGCAGGCGGCTGGAGACATGCGAATCATCGCTGGCAAGATTGCATCCCGTTACGACGGTGAAGCTGAAGCCGAGGTGCTCGGGTGGATAAATGCTCTGATCGGCGAAGACGTTAAGCCGGGAATGCGGAATGTTGAATCGCAGTTGAAAAACGGCATTTTCCTCGTCAGGCTGGCGAAGGCGGTTCAGGACGGTACACCGAGTTGCCCGGCCAAGGCAAAAAAGATGAGACTGAAGCCAAACACAATGTCCGCACCTTTCAAACAGATGGAGAACATCAACGTGTTCCTGAACTACTGCGAGGCGTACGGCGTGCCGAAGACCGGTCTCTTCCAGACGGTCGACCTGTTCGAGGGCCGCAACATGGCCCAGGTCCTCAACTGTATCCAACAGCTTGGCACGGAGTGCCAACGCAACAGTTTCAACGGGCCAACGATCGGAGCGCGGCCGACGGAGAAGAACATCCGAGAGTTCTCGGACGAGCAGCTGCGTGCGGGTCACTCGATCATCGGGCTGCAAGCCGGCACCAACAAATGCGCCTCCCAGAAGGGTATGTCCATGGGCGCAGCACGTCACGTCGCCGACATCCGCGCCGACGACATGGACAAAGATGGCCAGGGTATCATTGGGCTGCAGGCGGGTAGCAACAAGGGCGCATCGCAGGCTGGTATGTCCATGGGATCGGTCAGGCACGTGTCCGACATCCGCGCCGACGACATGGACAAAGATGGTCAGGGTATCATTGGGCTGCAGGCGGGTAGCAACAAGGGCGCATCGCAGGCTGGTATGTCCATGGGATCGGTCAGGCACGTGTCCGACATCCGCGCCGACGACATGGACAAAGATGGCCAGGGTATCATTGGGCTGCAGATGGGCTCGAACAAGGGCGCTTCACAGAAGGGCATGTCGATGGGGGCCGTGCGTCACGTCGCTGACATTCGCGCCGATGACATGGACAAGGATGGCCAGGGTGTCATCGGGTTGCAGATGGGCTCGAACAAGGGCGCTTCACAGAAGGGCATGTCGATGGGGGCCGTGCGTCACGTCGCTGACATTCGCGCCGACGACATGGACGCTGATGGCCAGGGCATTATCGGCCTGCAGATGGGATCCAACAAGGGAGCGTCTCAGAAGGGCATGTCAATGGGAGCCACCCGCCACGTCGCGGATATCCGAGCCGACGACATGTCGCAGGCGGGACAGGGCGTCATCAACCTGCAGTACGGAAGCACAGCCGGCGCTACCCAGCAAGGTATGTCGATGGGCGGACGGCGGAACATCAACATGTAAGTCGGTCCCGCGAGCCGCACCACTGATACTGGGCAGCACGTAATTTTGCGCCAAAGAGCATGGCGAACGACGACCTTCTTCAGCACACGGCACGTAGGAAGAGAGAGAGAGAGAGAGCAACGCCGAGAAGCCTTCTTCGATTTCACATCGACTTCACCGGTTGCCTGTCGACAATTCGATTCGCCGAAGAATGTTTATCGTCTTCATTTGTGCTCGTCATTCAGTAACTCCTCCAAGGACAGCCATTCAGCCGTCACAACAGGGCGACTTCATCTTTCGCTGGGTGCCGCTAGAAACGGAACATTTCCTACACTGCTTTCACTGCGGCCACTTACAGAATCTCTCAGTTATGTTGACAAACTCGGGGGGAGCAAAGTATTTTTTGTTTATCATTGCATAATTATATATTCTTTGTTGTTGTTGTTTTATTATCTTACATTGCAGCTGCGACCGGAACGATGAACGCTCTTATATGTATCCGTCTGCGCATGAGCAGCGATAGCGACGCTGATGTTTTGTATTTTTTAACCATCAAACATGCTGCATGCTGCGTGCTTGACGAACCACTAAAATGTTTAGTGTTTGCCACGTTCTTGCCGGTTTTAAGTTCGAGGCGAGTTTGTCCATTGAAAAAATTGCATCTTCATAAACATTTGTGTCTGCGACACGTGCGCCCTCTGACGGGCATTTATCTCTAATCTGACATTCACTGCATTTAGGTAGTCATGCGTAGCAGCGCCCTGAACGGATATACTTGACAGTCTGGACTAGGAAAGCAATACGTTATCTCATTCGTGCTAGCTTAGCAGTAGTTGATTCGCTGCACCGTTAACTATTTTAATGCTTCTTTCTTATTTCTTGGTTCACGAAACCAGCGCTTTGTAAAGACACTCCCGAAGTAATCTGTCGAATAAAACATTGTTACTGAATTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03045	DAN	DAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004133	Domain	DAN	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15283	GREMLIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0036122	Molecular Function	BMP binding	Interproscan
GO:0038098	Biological Process	sequestering of BMP from receptor via BMP binding	Interproscan
GO:0048018	Molecular Function	receptor ligand activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG17333.1 global RNA-seq network