Gene detail

Detailed information of RPACG17325.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG17325.1	CYTOKINE RECEPTOR	tig00035010	499758	502359	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG17325.1

MSRTKGGGGIRLSVTAGGPDTVSSSPDDKAMAATNHGYCSNFLVEILTILLLIAVPVLISGVCRFGTDCILPCHCQNHETCNEVTGVCESGCEKYINSWSGAAPFSGPGCQIKNLARSRGVHASQVGTWGSMVASRAVDGDIRQEEAYCSQPEASPDHEGAWWQVDLGDVYVINRVIIVNGYQTGENNYLHNIYISIGNSSNVMNHSGCGEQTDKVPAETNVMIPCEGWGSHVSIRKFGGHKMNALLFCEVFVIGYKYIDCAGACSGTCDKVIGCDKCQVGKKMPNCKLDCDPGTHGINCAERCSEHCVHSSRCDHVTGSCSGGCQQWYGLDTCMAEIIKVDYESTPTTFIVTSSSMSVSWPQSTKIPPRLESHYQYVVETADGQSNKEVRRPFIAGQASQTADIKGLTYNTQYLIKVRIDATHNNRTRKGNAGSDLSVKTSCIPPAKPVAPNVAVLDLDDSGLGSLQVTWQNLGDSGCDNFKKVVVQYKLTSSGEWQDKMVRMSQTQLTIDNLQPGYFDVRLSVTNNEDMGNVSEATTSNVNTTTTTEETIHPHSSSSGIIIGVVVALVVLIIIVVIVVFFRFRNSRECGTACLRRRSPNLQSTLAACTTEPETGDGHVYERLQLKKSSTLIQVAALEAFIKDMDSDSGGVVEEYNKLSQTEVPSSNVANQPENIDKNRFNHIHPYDHNRVKLDTNDYNPSDYINASHITGYGTNRYIACQGPTKSNESQIWRMICQFNVNRVVMVTPLEEGGKRMCDVYWPLNVDTQKVYGKVTVLMVSCNEYADVIIRTFHVNCQGKSRRVFHFQYTSWSSKQVPVHTSPVLAFLVVVMVVVVVVVVDIVVMMVVVVVNIVVMMVVVVVDIIVMMVVVVDIVVMMVVVVVDIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVNIVVMMVVVVIDIVVMMVVVVVNIIVMMVVVVVDIIVMMVVVVIDIVVMMVVVVVDIVVMMVMVVIVIVVMMVVVVVDIVVMMVMVVIVIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIILMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIIVMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIILMMVVVVIHIIVMMVVVVVDIIVMMVVVVVVIVVIMVVVVVVDIILMMVVVVIHIIVMMVVVVVDIVVMMVVVVIVIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVDIIVMMVMVVIDIIVMMVVVVVDIVVMMVVVVVDIIVMMVVVVVNIVVMMVMVVIDIIVMMVVVVVDFIVMMVVVVVDIVVMMVMVVIDIIVMMVVVVVDFIVMMVVVVVDFIVMMVVVVVVIVVIMVVVVVVDFVVMMVVVVVDFVVMMVVVVVVIVVMMVVVVVVDFVVMMVVVVIDFVVMMVVVVIDIVVMMVVVVVDIVVMMVVVVIDIIVMMVMVVVDIVVMMVVVVIDIIVMMVMVVVDIVVMMVVVVIDIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVIDIIVMMVMVVIHIIVMMVVVVVDIIVMMVVVVIHIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVDIVVMMVVVVIDIVVMMVMVVVDIIVMMVVVVVVIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVVIVLMMVVVVVVIIVMMVVVVVDIVVMMVVVVVDIILMMVVVVVVIVVMMVVVVVDIILMMVVVVVDIILMMVVVVVVIIVMMVVVVVDIVVMMVVVVVDIVLMMVVVVIVIVLMMVVVVIVIIVMMVVVVVDIILMMVVVVVDIVVMMVVVVVVIVVMMVVVVVDIIVMMVVVVVDIVVMMVVVVVDIIVMMVVVVIDIIVMMVVVVVDIVVMMVMVVVDIIVMMVVVVVDIVVMMVVVVVDIIVMMVVVVVDIIVMMGVVVVDIIVMMVVVVVDIVVMMVVVVVDIIVMMVVVVVVIVVMMVVVVVDIVVMMVVVVVDIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVDIVVMMVVVVVYIVVMMVVVVFDIVVMMVVVVVYIIVMMVVVVVDIIVMMVVVVIDIVVMMVVVVVDIVVMMVMVVIVIVVMMVVVVVDIVVMMVMVVIVIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIILMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIIVMMVVVVIHIIVMMVVVVVVIVVMMVVVVIVIVVMMVVVVVDIILMMVVVVIHIIVMMVVVVVDIIVMMVVVVVVIVVIMVVVVVVDIILMMVVVVIHIIVMMVVVVVDIVVMMVVVVIVIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVDIIVMMVMVVIDIIVMMVVVVVDIVVMMVVVVVDIIVMMVVVVVNIVVMMVMVVIDIIVMMVVVVVDFIVMMVVVVVDIVVMMVMVVIDIIVMMVVVVVDFIVMMVVVVVDFIVMMVVVVVVIVVIMVVVVVVDFVVMMVVVVVDFVVMMVVVVVVIVVMMVVVVVVDFVVMMVVVVIDFVVMMVVVVIDIVVMMVVVVVDIVVMMVVVVIDIIVMMVMVVVDIVVMMVVVVIDIIVMMVMVVVDIVVMMVVVVIDIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVIDIIVMMVMVVIHIIVMMVVVVVDIIVMMVVVVIHIIVMMVVVVVDIVVMMVVVVVDIVVMMVVVVIHIIVMMVVVVVDIVVMMVVVVIDIVVMM

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR006585	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050713	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG17325.1 global RNA-seq network