Gene detail

Detailed information of RPACG16913.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG16913.1	SENTRIN/SUMO-SPECIFIC PROTEASE	tig00034994	1244569	1272016	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG16913.1

ATGCTGCTTGCAGAGACAATTAATACAGTGATCTGCTGCCAGTGTGAAGGTAATACCTGCCGGTCATCCCCATGCCTCAATGAAGGCATCTGTTTCAACGGTCCACGCAGCTACATGTGCGGTTGTCCAGCAGGGTTTACCGGCGTCTCTTGTGAGATCAACATAGACGAATGCGCTCTTGGTTACTGCGAGAACGGCGCTACGTGCATCGATGGAATCGATGCATACATTTGTGTTTGTACTCGAGGTTGGGAAGGCCATAATTGTTCCCAGGATACGGACGAATGTGCGTCTGTGCCATGCATGAATGCCGGCGGGTGTGTGGATGGCTTCAACGGGTACACATGTCGATGCAAGAATGGGTATGTAGGAGGCTATTCAGGGCAGCTTTGTGAACAAGACATCGATGAGTGCGCATCGAGTCCATGCGCTCACTCGGGACGCTGTGAAGATGGTGCTGCCATCTACAGGTGTCGGTGCACACCAGCATGGACAGGGGTGAACTGTGAGGTCGGGGTCAATGAGTGCAGTTCAAGTCCGTGCGAGAATGAAGGGCGGTGTGTAGACAGGGTGGGGCGATACATCTGCCAGTGCAAGAGAGGCTACGCAGGTATCCATTGTGAGGTGAACATCGATGATTGCACGAGTCAACCATGTCTGAATGGCGCCACCTGCAGGGACTTTGTGAACTACTACAGGTGCACATGTGCGAGCGGCTTTACGGGAGTAGCATGTGAGATCAATATAGACGAGTGCGCGTCATTGCCGTGTGCACATGGCGGATCGTGTAAAGATGACATCAATGGGTATCACTGTCTATGTCTACCAGGCTTCACGGGGCCACAATGTGGTGATGATGTCAACGAGTGTCACTCCAACCCTTGTGACAATGATGCCCCGTGTATCAACAGAATCGCAGGGTTTTATTGTGTCTGTCCCACCGGTCTGACAGGTGCGACATGCAGCGAGGACGTAGACGACTGTACACCGAACAACGAATGTCGCAACGGTGCAGCGTGTGTTGATGTGCTCAATGGTTACACCTGTGAGTGTCGACCGGGATGGGAGGGCCGTCTGTGTACACAGGAAACCAATGAGTGTCTCTCACAACCATGTGTAAATGGAGGCATCTGTATGGATACTCTAAATGGCTTCACCTGTCGGTGTACGGCAAATTTTGGTGGCGCCACCTGTGCGGACGATGTCGATGAGTGTCTAACGCAGTCGCCGTGTCGCAACTATGTGCTGTGCAACAACACGTTCGGTGGATTCCGCTGCGTCTGCCTTCCAGGATTTACCGGTCATTACTGTGAGAGAGAGATAGACGAATGTGACAGTCAGCCATGTTACTTCGGAGGCACATGTACAGACCTTGTCCATGGCTACCAGTGTATATGTGTCAATGGCTTCATTGGACCTCGATGTGAAGCAGTGGTCAGACAATGTCCCCTCATCAACCCTTGTTCGCAGAATGCTGTCTGTGTTGAGAAACCGGCAGGAAGCTACAGATGTTTCTGTCAGCCCGGCTTTGAGGGGGAGTTTTGTGATTTGGAGATTGATGAATGTCTCTCAAACCCATGCTTCAACGGTGGGAACTGTACAGACATTGTTAATGGATATACGTGTAGCTGTAGGTCAGGCTACACTGGAGACAACTGTAAGGTTGACGTCAACGAGTGCTCCAGTCAGCCTTGTCTCCACGGAGCTACCTGCTCCGAGCCGCAAGTCAACATATATGCATGCGCATGCACAGCGGGGTATAGTGGCGCCACCTGTGAACACAATCTGAATGAATGTCTCTCTCAGCCGTGTCCCCCTCATCATGTCTGCCATGACCTCGTCAACGGATACAGGTGTGCTTGTCCTGTTGGGATGGGTGGAGCTGACTGTGGTGTCCTTGTAGACAAGTGTCGCAGCAGTCCGTGTCTCCACTCGGCCACATGTGTGTCCTCCGCCTCTGCGTACAAGTGTCACTGCGTCTACCCCTGGAGTGGTGCACTCTGTGAGGTCACTGTAGATCGCTGTTACCCCAATCCCTGTCTCTACGGGGGCACGTGTGTGGAGGACGCGCGGTCAAATCACGGCTACCAGTGTGTGTGTGTAACCGGATTTATAGGTGACAGGTGTCAAGGTGATGTGTACGAATGCCTCTCGTCACCCTGTCACCATGGTGGCTCTTGTGTGGAATGGACAGACGGACAGATGGGCTTCGACTGTGTGTGCCCGCCATTTTATAGTGGACGTTTCTGTGAGCACGATCTGCTCAGCTGTGATACTGTGCCCTGTCTCAATGGCGCCACCTGTGTGCAAAACTTTGACTCAAGAGGCTTCACCTGCATCTGTGCTGGAGGCTGGCTGGGTTCTCTCTGTAACAACAACATAGACGAGTGTGCTACACATCCGCCGTGTGTTAATGGGGCTGTGTGTGTTGACACACCTGGCAGCTACGTATGTGTGTGTGGCCCCTACTGGACAGGGGTCAACTGTGAGGTGGACATCGCTGAGTGCGATCAGCAGCCTTGTGGCAGCGGAGGAAAGTGTGTGGAGAGGAGGGGAAGGTCATACACCTGCAGGTGTCACACAGGATACACGGGACATGATTGTGAGACCGACATCAATGAATGTTTGTCCACTCCGTGCGTCAACAATGCCACCTGTGGTGACAATGTTGGGTACTTCACCTGCAAATGTCTGCCGGGATACGCTGGAGTGACATGTGACACCAACATAGACGAATGTCAGTTATTGCAGCCATGCAGGAACAATGGCCACTGCACTGACAAAGTCAATGGCTACCATTGCACATGTGCAGTAGGGTTCACAGGGGTCAGATGCGAAACTAACACCGATGAGTGCAAGTCACATCCGTGTGTCAACAATGCCACCTGTATAGATGACGTCAACGCATTCACCTGTAAATGCCTCCCGGGATATACAGGCATATCATGTGACCATGACATAGACGAATGCGCCATCTGGAGGCCGTGTCAGAATGAGGCTACTTGTGTAGATGAAGTGGATGGGTTTAGATGTCTGTGTCTTCCAGGCTGGACAGGCAAGAGATGTTCTGTGAACATAGACGACTGTCGCACTGACCCCTGCACCAACGGAGGTCGCTGTATTGACCTTGTATCGGACTACAAGTGCAGTTGCACCCCAGGGTTCAAAGGCAAGAACTGCTCCCTGGATATCGCTGAGTGTGCCTCCACACCATGCAACTACGGAGGACGATGCTCAGAGCCACAGCCGAACATTTACACGTGCATGTGTCCCTCTGGTGTCCAAGGCATGAACTGCGATACGGTTGTCTTCGCAACATTTGATGGAAGCAAGAGTCTGCTAGTGGAGCCACCTGTTGTGCAACGTAGAACTAATATTGGTGTCAGTTTCAAACTCCAGACAACGGTAGACACAGGACTAGTCTTGTATTTGTCTCGTGGCAGCCCATCATCTCCCCAGCACCTACTGGCTGAACTGAGCCGTGGAATACTGCGTGTGTCAGCCAGTATCGGGATCGAGACCCTCGTAGTGACTTTCTCGACCTTCACGCCCCTGTACGCACGCACCTACATCGCCAAAGTCACCATAACAGTGTCAGGCCGTGAACTGGTAGTGACACTACTTGACACCAATCACTGTCACACAGAACTTGGGTGTACAAAGAGGGAGATCGCTGGTCCAGGCTCAAGTGGTGACTCTAGTGTAGGTGTTGTCTACCCCTTCACCCTTGCCGTAGGGGGAGTACCACAAGTGACTCCATACGTTCGAAGCAAAACGACAACAACGACCAACTTCCGTGGGTGTATCGGGGGCATCAAACTGAATGACATTCTTGTCAACCTGGCCATGTCTGACATGACACCGATGTCTGGTGACGCAATGCCATCAAATGACACAAACTTTCCAAAACCGGGCTGTGCAGCACACGTCAGATGTCAATCGTCACATTGCAGTAACCATGGCAACTGTGTTGACCTGTGGACTCAGAACGAGTGTAGTTGTCGACCAGGGTTCGTTGGGCCAAAGTGTTCCCGGCAGACGACCGCTCATTTCAGCGGCTCCTCATTCCTGCAGTTTGGTGGCCAGGCCGATATCACTGACATCTCACTGTGGATATCGGCTACCGAAGAATCTGGTATTATATTCTACACGTTGATATCTAATCCACTGTGTATTGCGGTGGATGCTGGCAAGCTGCGTGTCCACCTGGTGTTGAATGGTGAAGACATAATTGTGAGAAGTGAAGACAATGTCACTGATGGTTCTTGGTATTCAGTACATCTCCACCTGACAAACAACAAATTGACCGTTGAAGTACTGACGAGGCACGGCGTAGCAATCTGGCAGGATGTCCAGTTTGTGGCGGGCCAACTCCGAGTCCAGATGCCTCTATTCCTTGGACAGCTGCACTCTGACCCTGTTGTTGGCGTGTGGAGGAGGCGCCCCAAAGCTCTCCCCTCTCCCTTTAGCTTCATCGGATGTCTACGAGACTTGAGAATAAACATGGAAAATGTTCGTCTAGAGAAGGCCACTCCATCAAACCTTGGGCATGATCCACCGTTGGCTAAGGCCGGCTGCCCAAGGGAAGATGTCTGCTTCCCTTCTCCTTGTCAGAATGGGGGAAGCTGTGAGGCAGGCTGGACCAATGCAACATGTCTGTGTCCTGATGGTTACCGGGGACCATATTGCTCTAAAGTCTCTGCGATTACATTCAACGGCGCAACAAGTTACCTTGAGCTGGAGGTGAACACGAACTCCGTGCCCTTTGGGGACACTGTGTCTCTGGAGGTGCGCACAAGAGCATCCTCTGGACAACTGCTCCATCTTCAGCTGCTGGACCAGAGCAGGAGGTTCACGGACAGTCTCCAGATCCGGATCACAAAAAATAAACTGGAGGTGTCAACAAAGACACGATCCAGTATTGCCACCTCTGTCACCCTGGCTGAGTCTGTGTCAGACGGACGTTGGCATCAGCTGTACTGGCGCATACTGGCAAGAAAGATTGTCTTTAAAGTCGATGGAATAGCTACAAGTGTCAACCTTGCGTTTGACGTCTTCAGCAGTGACAGAAATAGCGACATTGTTGTGTATGTTGGAGCACGTCCTTATCTTCCAGGTGAGATCACCACAATGATTGGCTACTTCAAGGGCTGCATCCGAAACATACAGTTTAATGACCGACATCTTGACTACCTCATTCCATCACCACCAGGTGGCATCACAGTTGTAAGCGACATCGCAACCATCCTAGGTTGTCATGGTGATGACATGTGTCGTGTTAATCCATGTCCACCAAATGCATTCTGCGTTGACATGTGGAACACGTTTAGATGCGATTGTCTTCCTGGTTGGCGGGGCACTCGGTGCGATCGCAGCGTCAATGACTGCATCAATGCGGCCTGCGTCAATGGCGCCACATGTGTCGACGGTCACATGACCTATACATGTATGTGTTCTCATGGTTACACTGGACGTTTGTGTGAGCGCCTGGTGATGATGTGTGACAGCGCCCCCTGTATTAATGACACATCTCTCAGCTGTACATCTCTATTCCCAGCTGCCTACCGCTGCCGCTGCAAGGCAGGCTGGGAAGGCAGAAACTGTGAGATAAACATCGACGAGTGCAGCACAGCACCTTGTCTTCATGGCGGCACATGTGTCGATCTCGTTGCAGCGTTCAACTGTAGTTGCGATGTTGACCACTATGGCGATTCATGTCAACACGAGACGGCGTGCGCAGCACGGCCGTGTCGTAACGCCGGGAGATGCCTCGAGGGCATGGATCATTCACACTACACCTGCGCGTGCACAGATTGGTACGTCGGGCGACAGTGTCAAATATATAACTCTTGCCACAACCACACCTGTCTCAACGGTGCCACTTGCATGCGTCGTGGTATGTCGTTCAGCTGCTCTTGTGCTGGTGGTTACCATGGCGATCGGTGTCAGTTTGTCGACGAATGTTATGCAATGCCGTGTCGACACGGAGCAGCGTGCCACAGAATCGACAACGAGCACATCTGTGACTGCAGTGAACACTACACTGGCCAGGACTGTGAGACTGCCATCAACAAGTGTCACATAGATCCGTGTCAGCACGGAGCAAGTTGTTGGTTTAACACGTCTGACCCGGAGCACAATGTGACGTGTCAATGCGTAGATGGATATTCTGGCTCGCTGTGTCAAAATGACATCGATGAATGCGTGTCAGATCCGTGTGTCAATGGCGCAAACTGCACGGAAAGTGGTTCACATGTGAATGGCACGTTCTTCCCTGGCTTCCTGTGTGGGTGCATTGTGGGATACATGGGTGCACAGTGTGAGAGCAACATCAACGAATGTGCCAGTATGCCGTGCGTCAACAATGCGACATGTCTTGACATCGTCTCCGCGTTCCAGTGTCAGTGTCATCAACACTTTGAAGGCCTCACTTGTGAACAGGACAGACGTGGCTGTCTGTCATCACCATGTGTCAACAGTGGCACTTGTGTCGACAATGTCAACGCCACCGACAACTCCATGAACTCGACCTACATCTGTGAATGTGTCACCGGTTACGCTGGCTTCAACTGTGAGACCGACATTGATGACTGTGTCTCAGCACCATGTCTGAATGCAGCGACCTGTGTCGATCTCATCGACAGCTTTGCATGTGTCTGTCTGCCCGGCTACAGTGGCGACCTCTGTGATATCATTGTTGACTCGTGCTACAGCCAGCCGTGTCTCCATGGAGGCAACTGTTCCTATGTTGGTTTGTGCAGCTGTGGGGACATCGTTGTCCGCTGCGGTTGGCACGATGAACCATGCCAGCTACATGAATGTGCTGCCCACCCACAATGCACTGCCAGAAACATGTCATTCCAGTGCAGTTGCAGTGGCACTGGCTACAGTGGCGCCATCTGTGAAGTCGATGTCAACGAATGCCTGGTGGCGGACCTGTGCAACGAGGGTCGGTGCGAGAACAGTGTCGGGAGGTTCACGTGTCACTGTAACAATACTGGTTACTATGGCGACTGGTGCGAAGAAGACGTAGACGAATGCATGACGATGCCGGAGCCTTGTTTCAACGGAGGGACGTGTGTCAACTACGCGAGTTCATACGGCTGCATCTGTGACGGGCTCATCTGGACAGGCCGGGACTGTGGTCAGCGACTGGACACATGTGTCAGCGAGCCATGTCAACATGGTGGTCAGTGTTTCGTCAACACAGGAGTGGATGGATTTACGTGTAACTGCAGCGGATCAGGGTACACTGGCTGGCTGTGTGAAACCAGGGAGGACCCTTGTTTAGTCGGCTCCCACCATTGTCTCAATGGCGCCACCTGTCAGACGGACCACGCCACCGGCACCTACACCTGTCTGTGTGCACCCTACTACACAGGTGACTTCTGTGACATCACAATAGCCGTTCCATCAATGCGTAGGGACCCTCTGGTGACAGTGCTTGCTGTCTCTCTCAGTGTCATTCTGCTCTTGGTTATCCTGGTTGTCGTCTTGTGCGTCTTGCGTCAGCGCCGTTACCGGGGCAAGTACAACCCAGCGGCGGTGGAGACAGTGGGCGGTTTGGCTGTTCCTCTCTCTCAGATGCTTGCCCCAGACACCAAGGAGTTCCTCATATGA

Transcript

RPACG16913.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12606	SENTRIN/SUMO-SPECIFIC PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0016926	Biological Process	protein desumoylation	Interproscan
GO:0016929	Molecular Function	deSUMOylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG16913.1 global RNA-seq network