Gene detail

Detailed information of RPACG16276.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG16276.1	RING FINGER PROTEIN 37	tig00034984	1017064	1036315	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG16276.1

GTCGGAGCCCCGGAAAAGTTCATGAACAACACGAAAGGCCTGATGGGAGTGTTCAACGGCGATCCTAGCGACGACCTGCAGCCGCCAGGGAAAGGCGTACTTCCGCTGTCCAACAGCTCATCGGAAAGCAAGATCTTCAAACAATTTGGCGAACTGTGGAAACTCCAGAAAATCGACTCGCTGTTCTACCGGGGGCCGTCCGATGATAACAGTGCATACCTGCCTAGTATGTTCAGGCCGTTCTTCTTCGCCGACGTTCGTTCCAAACTAACGGAGAGGCAAAGGAATAAAATAAACCAGACATGTGGGGACAACATAGCGTGCGAATTTGACTTAGCAGTGACGGGTAATGAAATCGCTGCTGCAGAAACTCGGGACACTGACTCAACCAATACAGAAAATGCGAACACAATATCCAACGCGAGTCCCAGTATCACCATCGACAAAGTGTTCAACGTGACCGTGGGAAACGAGAGCACACTGCAATTGAGCACGTTCGATCCGGATGGCGACAGCGTCGTCCTTAGCCTGGCATCTGCTCTGCCATACGGGGCCAAGTTAATTGGCCAGACTGAGTACAAATGGAAACCTACCAACATGGACAGAGTTAATTTATCATTTTCCGCTTCGGACGGCAAGAAAGGCGTTGCGGAGTTTGATGTAACAGTCAATATGTGCAACTGTTCCAACCACGGACGGTGTCTCTTTGACCGACTTGCAAACGGATTCAAAATGAAGGAGACTTTCAGGATCGTTCAGTGCAACTGCACCATAGGCTGGGAAGGTGACCACTGTGAGCTTGACTTGGACGGATGTCAAGACAATCCTTGTACTGTGGGTACCAACTGCACCGACGTCCCTGCGGCGAATCAAGTCGAGTCTGGCGTGCCGTACATTTGTAGCGCTTGTCCTGTAGGAACAACTGCGAGTGACGGGATATGTCTGTCGATTAACGAATGCGATCCTGATATGCCCAGACACAACTGTGAACAGATTTGTATCGACCAAGCGGTAAACTTTACGTGTACTTGCAAGGATGGTTATCGTCTGCTAACGAACGGCAAAAACTGTACTGACATCGACGAGTGTTCAGAGAAGACTTCCGGTTGCGAACAGAAATGTACTAACACAATCGGCAGCTACGAGTGTTCCTGCTTCGACGGCTACAAGCGTAAATCGAACAAGACTTGCGCTGTCGATTTTTCAGAAGAAATGGAAATGCAATGCAGCCTTCTGAATTGTTCGTATGGCTGCAAGGCGAATGGTACAAGTGATTTCGTGTGTTTCTGTCGGTCGGGATACAGTCTCGCTGACGATAATAAATCATGTGAAGATATGAACGAATGTGAAATGAGCAATGATGGTTGTGTCCACAATTGTACGAACTTCGTCGGCGGCTTCAGCTGCAGCTGTGATGAAGGCTTCCAGCTCATGAATGATAAGAAAGGATGCAAACCGTGTCCGAGCGGTACATGGGGTAAGGAATGTCTTCGTGACTGCAACTGTCGTGACAGTGACACTAACTGCAGTGTGACGACAGGCTGTAGCGACTGTCCGGACGGCTTCACAGGCGGTGACTGCCACGACGATATCGACGAGTGCACCGGCAGCAGTCCTTGCGACGACCACGCCAACTGTAGTAACACCGTTGGCACCTACAAGTGTGTCTGTCAAGCAGGGTTCACGCAGTATAACGCCACCATATGTCACGATTTGGACGAGTGTGAGAGCGACCCGTGCGCTAACGGGGGAGAGTGCGACAACGGCAAAAATGAGTTCTTATGCACGTGCTTGGCGGGATACAACGGCACCAATTGCGAGATAGATATCAACGAATGTGAAAATTCGCCATGCAGAAACAACGGTACTTGCAAAGACCTCGTTGACAGGTACCGCTGCGCATGTGCGCGTGGATTCACCGGCGCAAACTGCGAGATAGAGATTGAGATCTGCTATAGTAGACCGTGCCAGCATGACGGCAACTGTAGTCAGGGCGCCGGCAAGTTTGTGTGTAACTGTACGCCAGGGTACACGGGTCTGAACTGCGAAAACGACATCGACGAGTGTCTGAGCCGCCCCTGTCTGCATGGCGCCACGTGTCTTATGCCAGCCGTTGACACGTTCTCCTGCCAATGTGCGGCTGGCTTCTCCGGCGCTACATGTGAATCCGATATCGACGAGTGTAACAGCAGCCCATGTCAGAATGGGGGATCTTGCCGGAATGATTTCAATGCCTACGAGTGCGGCTGCCCAGCAGGGTATTACGGCAGCTCGTGTGCTGAACGAACCCGTGTGGCACACATAGCTCGAGTAACATTGGACGTCACGTTGAAGAATGAAAAGTACTCGACAAATCTGAAAAACAAGGCTTCAGCTGAGTACAAGAAACTGAAGACAAAAGTCGTGGATGCGCTTGCCAATATTCTAGACACCAAGCTTGGGAGGGAGACATATAAAATTCTGAACGTAGATTTCAGCAAAGGCAGTGTTGTGATCAAATACGCACTGGAAATGTCGAAGACTGCAGCGAAAGCAACAGTGGAGACCGTTCGCAGCGCTATCACAAAGAACAACGGAACATTTGCCGGCTACTCGGTTGACGTAAACTCTATCAAGTCAGAAGAGAAGAAAATATCGAAATACTACGGACAGTTTCGCGTGCTGGATCTTACTTTTAATCAGAAATGGAGCGATGACACTACGGTTGAATATGGCGCACTAGCAACAGAAGTCAGACTGAAGCTGAAACTAGCGTACAAGCAAGGAACCAAGGGGTCAACGCTTGTATTTGTGGAAGACATACAGTTCACGCCCGGCAGCGTCGTCGTACATTTCTCTATTGGCGTCGATGACGTTACGAACATCGACAAGTTGAAGACTGTCTTCAGAGATAATGTATTCCTGATTGCCGACAAGACTGTCGACGCAAACAGTTTTGTGTTTTCCGAAACTGAGTTCGGAAGTCCAGATTCTGTTTGGTTTGGCGTCATCGTCGGTTCGACGATCAGCTTCGTTCTTCTAGTTCTAATAATTATTCTCGTTATCTTCATCGGGCGTACGTGCCGACGGTACAGCCGCTGGCCGGGTTACGACGACGCCGCCTGCTCTTTCTCGACATCGTTAGATTGCCAGGAGTTTTCGGAGCCGCCTTTTCCGCCTCCAAATGGGCGGGTGATCGGAAATAGATATGAACAAATCAGGATGAACATACTCACCAGAGCATTACAGGGAATGGAAACTATACATTGGAGCATGGCACAGAGATTCAACCAGCGCTACGTACGGCGTCCAGACAACGTCACGCCGACGCAGCCGCCATCGCCTTCCACGCTGGTAGACCAATACGCTTCTGCGTACTCTTCAGGGACACATGCGTCGATTGTGTCACGGCCAGCACAGAGATAG

Transcript

RPACG16276.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564	U-box	U-box domain	Domain	Interproscan
PF19318	DUF5918	Family of unknown function (DUF5918)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003613	Domain	U-box domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039847	Family	RING finger protein 37	Interproscan
IPR039925	Domain	RNF37, RING-Ubox	Interproscan
IPR045696	Domain	RING finger protein 37, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13492	RING FINGER PROTEIN 37	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0034450	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG16276.1 global RNA-seq network