Gene detail

Detailed information of RPACG15439.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG15439.1	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	tig00034971	946126	952580	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG15439.1

CACGTGATTATCATATGATGATGTATGCAGTAGGAGAAAAATCGAATGAATAACGAGATGTATTCGATACTGCTTTGTGTCCTTTTTGCCTGCGTTGTTTTGTCTACTGTTGATGCGGACACGCCGGCAAACTGTTCTTACGAAGACATCAAAGGCACTTGGATATTCCACGTTGGATCGTTAAATCACGATAAAACCGTTCAATGCTCGTCTGTAGGGCCAGTCAAGTCAACGGTTAAGGTGAACCTTCTCTTTCCTGATGTGGCAGTCGATCAGTTTGGAAACAAAGGATTCTGGACCATTATCTACAATCAGGGTTTTGAAGTTGTTGTACACGGTCGCAAATACTTCGCCTTCTCAAAATACTCTGGCACTCTGAAGAATTCAACAAGCTATTGTGATGAAACAATGCCTGGAACAACCCATGATGTGATTGGACGAGAATGGGGCTGCTTCGTTGGTAAGAAGCTGACGCCATCCGTGGAACCAAAGAAAACTTTTACAAAGTTGTACAGTGCCTATAATCCCGAGCAGTTGTATCAGCGGAACTTAGACTTTGTGGCCAAGATCAACAACGTCCAGAAGTCGTGGAAGGCCGTCCACTACTCAGAGTATGAGACAATGACCATGCAGGATATGGTGAGGCGAGCGGGTGGCGTGATGTCACGAGTTCTTGGAAAACCGAGAGCGGCGCCATCTTCAGACGAACTGAAGAAGCTGGTTGCAGCATTGCCAGAGAATTTTGATTGGAGGAACCGAGATGGGGTAAACTTTGTACCCAAAGTTCGTAATCAAGAGGCATGTGGGAGTTGCTATGCTTTTGCATCTGTGGAAATGAATGAGGCGCGACTTCGAATTGCCACCAACAACACCGTCCAGATGACGTTTTCGCCACAAGATGTCGTTGAGTGCAGCGAGTATTCACAAGGTTGTGACGGAGGATTCCCGTATCTAATCGGAGGGAAATATGCCGAGGATTTTGGTCTCGTGGAGGAGAGTTGTCGTCCGTATTCATCGAAGCCGGGGAAGTGTGTGACTAAGCCGAGTTGTGCGAGACATTACTCCACCAACTACCGCTACGTTGGAGGTTACTACGGCGCATGCAATGAAGAGCAAATGATGCTGTCCCTCTACAAAAATGGGCCGATGGCCATTGCATTTGAAGTGTACGATGATTTCTATACGTACAAGGGCGGCATTTACCAGCACACACCCCTTGTTGATCGATTTAATCCATTTGAACTCACCGATCACGCTGTTCTCGTCGTTGGCTACGGCGTTGACACTGACACTGGTCTCAAGTACTGGATAGTGGAAAATAGCTGGGGGAAGAGTTGGGGAGAGGATGGGTACTTCCGAATCTTGAGAGGGGTCGATGAGTGCGCCTTAGAGAGTGTAGCGGTTGAATCATTCCCGATATTTTAGAATTTGCTCAACGATGGTGGTGATTGGTCAAAATTGCGCAGTTGGTTTAGGCGATTGTCATAACAATGTGTTGTTGGCATTTAGACGATATGTGCGGTCAGGTTAATAAAAGATACATTTTTAAAGGTATATTTTGAGTGAAATTACCATTTGATCTGCTTTAAGGAAGATGTATGTACAATTTGAACTATATTTACTTATTTTCCAATTGCTATGATTTACGTTACTCTGCATTTGGTTAGTTATTGGTAAATTGTGCTTTTGCAGAATCACAGGTTGCTGGTGCGGTCTGCAGAATAATGAACGTGAATTTTGTTGCCACTTTGTTAGATGTTTTTCTTAAAATTGCATACTACAAAATGTTTATAATAATGATGGAGTTGGGGAAAGTGGTATACAATGTTTACAAGGTGATCCACGGGAAATTTGTAGTTTTATAAATGGAGAATCTCAGAATGGAACGTTGAGATCATTAGAATAATTGACATTACCAAATCAAATGTTTTACATGTTTTAACGATCTGTCTGAAGCGGAAATTTCACAAATGACTAGTTAAAAACTTTGCAGAAATCACCCAGCAATATCACGTAAATTTGATTTTCAATTAACAGGGAGTGGCAGAAAATTATATTATGTAACCAGACAGTTATACTTTGCTGTGTATGTTTTTGAGTACATTACTGTAAGCACAATATTCAGGTTCCGACCTGGGAAATGTTAAAAAATACTCAGATAAGCAGGATTATTTAGTAATATTCAACGTGTTTATGTCGTAATTTGAATTTGTTGCACCATGTAATTTTTTTAATATACAAGATATGAAATAAAAATGTAAACTATATCTTTTATGACATGTTAATAATTTTTTATAAAAATATGTATTTTAAGTAATCTTGTGCTATTATATCCAACCAACAGTGGTTTGTAAATGAGATACTTTGTATTTGCAGTGGAACATATTTTATGAAGATATTTTTGTAACGTAGCTTGTATGACTGATTAAAGGTACAAAATGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan
IPR039576	Family	Amyloid beta precursor protein binding family B member 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14058	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001540	Molecular Function	amyloid-beta binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG15439.1 global RNA-seq network