Gene detail

Detailed information of RPACG15260.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG15260.1	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	tig00034911	1087315	1107562	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG15260.1

ATGGCGCATTTGTGCCCCGCCTACCTTGGCAGAGCTCGGTGTTCGCGAACACCAAAAAAGTCAAGTGTCGCGCCGGCGCCGCCATCCGTGCGACTAGATGACATTCTGTATGGTTTCGGTCAACCTCATGAGAATACCCCTTTGGTGTCAGCTGGACGGACTCTTGTGGTGACACCCCCGACGAAGCCACGGCGTTCCCACGGATACTTGTCACAAGACGCGACGCCCGCGAGTGATTCGTCGACGAGCGCATCTGAGAGCCGTAGTACCGACTATCGCATCAAATCGTCATGGGGCGCACTTCCGGTCGGCGGTACGACGATGGCCACGACGCGCTACCTAGCTGACGCACAACTCGAGACGGCCGATGCGCGACACCCGGCCAACGTGCCGATGTTGGTCGTTCGTGGCTACACGCCGACTCCGCGACGTGCCACGCAGGGTCACGTCACCGTCGAACGCGGCGCTGTTGTGAACGCCCTCTACAAGCTCGCTGATTGGCTGTTCGTTCGGACGGCCGACGACGCCGTCGGCTTTATACCTCGTGTGTGCGTTGAGGCGATCGGCCCCCGTACGGCGCGCGACTTCGGACAGCAGTTTCCGGAGAGGAATGGCGACGATATTGGGGCGCGACGTGGGCGAGCCTCGTTTTCACCGACGAACACGACGACGACGACAGCGTCCTCTGATGGCGATGGCGGATCCGGTGATGAATCGGGCGCTTCATTGCGCGACGCGTTTGGGTTTCTGCACTTGCGCAAGGGAACGCCTTCGCCACCGCCGCCACCACCACCGCCGCCTCCTGCAAGATGGCGCGATGGGCTAACAAGTCGTCAGAGTCGTGCCGTGCGTGGAGGTGTAACAAAACACGGACATACGAAGCGAATATATTCAGCCGAGGAAGACGGCGATCTGACGTCACGCCACGATATAGTGGATGCCATTGACATTGTATATGTTCCACCACCAAGTCTAGCAGCCAGGAAGTCGAGACAACCGAACGGTTTGTCCGAACGACACAGTCGTCGTTCCCCGTTGACTGTACCCGAGCGAGAGAAGGGTCAAAGTGGTTCGAACGACACCAGCCACACATCCGCCGATCAGCCGCGTTCGCTCTACCAAAAGGCGCTTCCGTCCTATCCAATGGTGAAATCAAACAACGGGTCGAGGCGCCGTCGGCGCTACAGGGCGATGGCTAATAATGTTTCTGTCAGGTATCGAGGCAGTAAGTCAGCCGGCGATGACGACGGTGACGACGACAGTCTGTCGGACGGTACGGGTGCTCGATCTTTATTCGAGGTCGCCCTTGAGTCGTCTGACAACTGCAGCGTGTGTCGCAGTCAGTACATGAATGTACGAAATCACGTCCAGTACGACCGTCCTGCCAGTAAATCGCCGAGCAACGAGAGTCGGCAGCGACGTCGCCGCGCCCAGACGGACCCCGAAAATGGTTTCGCAGATTCGGACCGTCCATCCGGCTCAGACCATAGTCCGCGCGGATCCGGGACGGACTACCACCACCAAAAACGGCGTGATCACTCTTGCTGTTCGGACCAGCCTCGGAGATCTGATTCACAACAGTGCAACGGCGAGACACAATGCAACGGGGACCACGTCCACCGAGAGGACCAACCACGTAACGGGGACCATCGACATCGCGAGAACCATCGTAGCGGAAGTGGCACGAGGCGGCGCAGTGTGAGTGCCACTCGGCGTCAACGCGCCACACTGACGGTTGTGTTTGACCACGTCAGCCAGACTGAAGGCGACATTGACGTGCGACGCGGCGACATCGTTCGTCTCCTCAGTGACGCCGACTCAAGGTGTTACTGGGTGCGGCGGGAGGTGGACGGGCGCAAGGGATTCATCCCCAAGTCGTGCGCCGTCAACCTGCGTGAGTTCAACCTAGACCCGTCGACGAAGACCACTTACCTGTGACGTGTTGTCACGTGACAGTCTCAAAAGGGCGTACCTATTGTTTTACGCCATACTCATTAATTGCATGAAAACAGTTCTGCAATGTCACTTGAATTTGATGTCAAGCAAACAGGATTGCTATCAACAAATGAGCACTGTCTATAATGTGTTTTATATTGGTAATATGTACATTTTCTATAGTAAATATGTGTCGCTGAGAAAAATAGAGGCATTATTTCTATCATGTGCGGGTATGTTTAAAAAACTCTGTGGAAGATACTTACTATTCAGGTAGAGGCCCACTGTCAAATGGCATGAATACTTAACTGCGTTCAGGCGAATAATATATGTATATATTATAAATACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15898	PRKG1_interact	cGMP-dependent protein kinase interacting domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031775	Domain	cGMP-dependent protein kinase, interacting domain	Interproscan
IPR051226	Family	Protein Phosphatase 1 Regulatory Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24179	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004857	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0019208	Molecular Function	phosphatase regulator activity	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG15260.1 global RNA-seq network