Gene detail

Detailed information of RPACG13289.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG13289.1	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	tig00004179	330468	382675	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG13289.1

ATGCCGGAGTGCCGTGGGAGTGTTTCAACCGCGGACGGGGCGGACGGGGCGGACGGGGCGGACAGGCGGACGGGGCGGACGGGGCGGACGGGGCGGACGGGGCGGACGGGGCGGACGGGGCGGACGGGCGGAGATGAGATCGCACTGATTTTATTGCGCGAAAAAAAACAGTACATAAAGTTTACTCGGTGGGGAGAACTAGTGCACGCCTGCCGGACGGCGTGGGTTGAGCTGGACTTCTCTGAACGTCGAGGTCGATCGCCGACGTCCTTCCCGACACATCCAACGTCGGTATCTTCGTGCTTCTTAGTTGATGGGAAGACTAGTTACTCAGGGTATACAACGGTTATCCGAACCTATCGATCTCGTCTCGACGGACGTGTAATTGGCGCCGTTCTGTTCCGTTTGACTGCAGCGACTGTGCCGGATGACGTAGCAACGCACGAAAGGACGTTATAGAGTTGAAGAGACAAGATGGGTGCCAAGCACTCGGCGCAGAAGGCGGCGGCGGCGGCGGCGGCTGCAGCTAGTGCGGGAAACATCGCACGCAACGACATTGTACTCCAAGATTCGCTGCTGAAGACTGGGACGGGCGAAGGAAATGTAGCCGGACAGAAGGAGGTGTCGACGTCAGGTCCACCAGTCGGGCCCGCAGGAGAGGAAGAGAGAGAACACTGGGGGAAGAAAGCTGACTTCCTCTTATCCGTCATTGGCTTTGCCGTCGACCTCGCCAACGTCTGGCGCTTCCCCTACCTGTGCTACAAGAATGGCGGAGGAGCTTTCCTCATCTGCTACGTCATGATGCTACTGCTTGGGGGAATCCCCCTATTCTACATGGAGCTAGCCCTCGGACAATATCACAGGAAGGGGGCCATCACTTGCTGGGGCCGCGTCTGCCCCCTATTTAAAGGCGTCGGCTGCTCCGTCGTGCTCATCGCCTTCTACACGGACTTCTTCTACAACGTGATCATTGCCTGGGCGCTCTACTACTTCTTCGCATCGTTCACCGTCAACCTGCCGTGGACGACGTGCAACAACACGTGGAACACGCCCGACTGCTACGACCACAGCGAATACAACGACAGCGCGTTCTCGTCGAACAGTTCCGGAGCATTCGCCGTGACACAAAACATTCTCGTCACTGGTTCTTCTTTGGCAAGCAATGTCACATCATCTCGCAAATCTGCGGCGATGGAATATTTTGAACGAGGCATGTTGGAATTGCACAAAAGCGACGGCATTGACAGCATCGGGAAGGTGAGATGGCAAATAGCCTTGTGTCTCTTGGCGGTCTACGTCATCTGCTACTTCAGTCTGTGGAAGGGGATATCCACATCAGGCAAGGTGGTGTGGTTCACGGCTCTCTTCCCCTACGTCGTCCTGCTCATCCTCCTGGTCCGGGGCGTCACCCTCCCCGGGGCGGCAGATGGCATCAAGTATTACCTCACCCCGGACTTCCGACGTCTCGCCAGCTCTCAGGTGTGGGTCGACGCCGCCACTCAGGTGTTCTTCTCCCTCGGTCCCGGCTTCGGCGTGTTGCTCGCCTACGCCAGCTACAACAAGTTTCACAACAATGTTTACAGAGACGCGCTTGTAACCAGCTCCATCAACTGCGGGACGAGCTTTCTCTCCGGCTTCGTCATCTTCTCTGTGCTCGGTTACATGGCCAAGCGCAGCAAGCAAGACATTGCCGACGTCGCCACCGAAGGACCTGGTCTCGTGTTCATCGTGTACCCAGAAGCCATCGCCACGCTGCCGGGCTCCACCTTCTGGTCTCTCATCTTCTTCATGATGCTGCTAACGCTCGGTCTCGACAGCTCCTTCGGCGGGTCGGAGGCTGTAGTGACGGCCGTAAGCGACGAGTTCCCGATTCTCAAGAAACATCGCGAGATTACCGTTGGCGTTCTCTTTACGTTCTATTTTATCGTTGGTCTCGGCAGCTGCACGCAGGGCGGCGCCTACGTGGTGAATCTGATGGACAAATACGCTGTTGGATACTCCATACTGGTCGCCGTCTTTCTTGAAACTCTTGCGGTCTCTTGGCTTTACGGCACCGATCGGTTTGCGCAAGACATCAAGGACATGCTGGGCTTCAAACCAGGCATCTACTGGCGGATCTGTTGGAAGTATATCGCCCCCATTTTTATACTGGGCATAATGATATTCGGGTTTGTGATGTATGAGCCTCTTACCTATGACGACTACATCTACCCGTCATGGGCAAACGTCGTCGGTTGGTGTCTCGCCCTCTCCTCCATGCTATGCATGCCTGTCTTTGCTATCTACAGTCTGTTACGGACGGAAGGATCCTTCACGGAGCGTTTGAAGATCCTAACTACTCCGTGGAGAGACAGCCAGAAGGCGAACGTGATGTCGATCTACGCCAAGTCAAATGGCAACAGCCTCGTCGACGCTGTGTAATTGCTACACACAACGGAACACAGGCGCGGCGTCACCTTCGCGGCGCTAGGCCTGGCGCCGGCACAGTCCGATGTTGTGACCCGGTGAACCGATGGCATGACTCGGAGTCCGGTGTAATGGCCCGAGTTCGATGTTGTGGAGCGAGGTCCGATGCTATGACTCTGATCAGATATCGTGGCATAATGTATGACATTGTGACTCAGGGTCCAGTGTTGTGACCTGATGTCCAACGATATGACACAACGGCCGACATTGTGGCGCATGTTCAATATTGTGACCTCATGTCCAATATTGTGACCTCATGTCCAATATTGTGATCCCAGGTCCAATATTGTGACACGGGTTTCGATGTTGACCCATGTACAATATTGCACGCGAGTTCTCAACTCAAGACGTGACTTGTTGTGACTTGACATCTGATTGTATGACTCTGGGCCATTGGTTATCAGAGATCGTACTTCATGAGCGGAAGAAAATGTATCTGGGCAGAACGTAGAGTAAACATGTTGTACAGACGACACACAATTCCGTCTGACAGCGCGTCGACTTCGCACAACAAAGTACGAATGACAATGTTCAGCTCTGTAAACGTCAGAAACAATCTCGTGAATATATTCTTGTCTGGAAAACTGCCGCCGATCCAGTGACGCCACAGTAGACCCAGATCTAGGTCCACATCACTTAATCGGGATCGTTCTGTTTTCGGAGGTCTAATTTCCAGTAAGAACAATTCCAGTTGGATCCGAACACGATGAAATGGACTGCAGAACTGCAGCTTAGGTGAACTACGCGTGTATCATGCAGATGGCGCTAGAGTAGCAGGTTGAGGCACGCCGTATATAAGAACGTTGACACATAGGATTAGTGTGTTTATTACTAATATCATAACCTTGTACGGATCAATACGCATTTGCACCGATATAGCTATATATGTATAGGTTGGGAATTATGGGCAGTTTGCGAAGACGGGCGCGACTGATAATGAAACTATTCCCCTGATAGGCCTTCTGTAGTCGTGGGTCGGTTAATTTCAGTTATGCGCAAAGCATTATGGGTATACAGACGTTCTTGCTGTTTCCCGCGCAATTCGTTATTGGCTTAGTCTTAGTAGATGGAAAACACTGAACGTAGAGTGGCAAAAACGTCATAGGTATCGCTATTAATAAAAAATATGATACATATGGTCGGGCCGTAATCACAATAAAGTAAACAACGCAAATGGGAATATAATTAAGCACTTGATCTAGTTTTTTTATACACGTAAATGTTAGATTCTGCGCCTGGAACGAGGACATTCGTGCGTGCATGTTCATTGTTATGTAGTGATTATGTGGTTTACATCTATACATCGTACGTATAAGATAACGGTGCATAAAATCTGGACAAGTATTTAAAGTGTCCATCTGTAGATTCGGCTGTTCCAGCGCTATACGGTTTCGCCATCTAGTGAGTGCGTTGGTACAAAAATTGCGTTACTGGCGACTCGTCATCTGTAACGATCTATAGTCAAATGTACAGGTTAGTAATTGCGCTTTCTTCTGGATGTGTTAACGCGCACGCGTGGAGACGGGTAGGTAGACGTAGAAACCGAAAGTTTTTAAGATAACATAATTGTATTTGGACAGTAAGAACGCATTAAAACTACGAATTTTTTAGCATTGAACTCGTATACACATTGTGCACTACTCAAAACTACACCGTTACTGTAAAAGATACATAGGAAGTTTTCATATTTGCCTGTTTGATGCTCATGGAAGACAACGGAAGATAACTTTTGTGACACTTCACACGATTATTTGACCTTGTTAGCTTAGCATACATTAATTGTGAATAGACTATGCATTAGTTTGTAAATGTTACTAACGTAAATCCAATGATGTGCATAGATATGTAAATTAATTTTGAATAGGTCTTCAATGTTTACATTAATAATTGTCACTGATAAATAGCCGCTTTTGTATTGTGTTTGTACTAAACACTTATCAGGTTTTATATCTGCACATGAAATGTACTGTTAGAAATGTTGCCTTTGTGAATAAAGTAGATTGTGTCTGAAAACTTTATACAACCGATCGCTAGGACCACTTTTATGAGCTGAAAACGGATCAGAGATAATTACATCTATGTGAACAATGAGAAAAATCACTGCGTAATGTCAAGACATCTATTTTATCAATAGGATGGCATCAGCATGTTTGCAAAATATTAAAATACATTGATTAGTGCTGGTTCAATACGTTCTCCACACGAACACGTGCCGAAGTTGAGACTATTACGACCCAAAATGTCTTTTGACATCAATTTGTATTAACCTGTAGTTATTTGCCTGCCCCGAAAACAACCGTTTGTAAAACAATAATCAAGTGGAATATAACACTATATTTCTGTTTGATTTGCAGTAGGTTTCTCTGCATAACACAACGCATTATAATACATTTTTTACTTTCACAAAAGAATATGTTATAGAAGTAAATGTTCTGTCTG

Protein

RPACG13289.1

MEHIIRQVATHGGLKQFINLKDIDILSEDLDGQFVWRMLFLAVESGQEDVAIYLLQPLQDTIVDVIINTPTDFLTLLLRSSQREMWEVMDKLILDVSGLIYNCELTVDNHGLTCLHYMAKSGQTSLIVRLLRLFECTGTSPSCIGQEDNLGRTAYWYSAANAHWPLTAVLLSYGANPLVKNPWPGRFVGLVDVSMSDKHDQYTVDLPRLWTVGLFADAASCSILHAACAMGEMALVKMLCKERPQLAKTLDNDGRSTLFYAAYNGRKDVIEMLLSLDVDWLSIDDAIFSAAALYALKQAHHISLLTMPRHMPLMMKKYSLFLQDIADQLAYATGTFASKEPLSGGVSAEAGLKNADKCIAVILQILAKEGSIPASDNHLLSLAAVVIGSHRLYTSLQEIDSLVMLLEQHQIATALTTAVGIWHLGQRATESISLFELALFFHAKRITIRSSNTKLSHEMLHDSIALLMSRNNEESTLLATVVSPLLSPTMRTLLEVNPAITLKCDTQSYLRIFFFALKNAPDCTILLASAIHQRPDDKEALAFLALQEAVYYNAHAIVLVLFEFDQNPSKRLMDDNVILRLAGEVSVRHFQPTWTALHVAIARGHTALFVTLWKQAARLSSSSIITGSDLWNELLYMSAAYGNDEVRACITQNGCQYLALSSGVDELLSRKIDARSVCLTAAKNGHGSYAETIFDDVASHVTTVHDEDKQTNIYHYAAANGLLALTSSLLEQNVPGFNRDDEYSVTPVQYAQAFGYLETLQVLLEHGKAAGISMTLHGWGLCGILRVTQKHTILFESSLTRTSTRKLTVDASSFENVAMQYVARILAEQRDHMAWVYIQAVHPDLSEQNANYQTLLHYAAAVGCVSSLKLMLEMAKQQNKLDICVMEDSTGRTALSYAIVTGHIDCAVLLLNHRGWSLCRRQKTGETLLHLAVRFRHEQLVKRLVDVGGPSQWQEQDAGDFTPKDYQKLLYLPHQPLPFQSPREQKGSEAMEKEPPPDWQCQTLENNQSKLEHVQLRQPSQEERKEWSRLDQTDKKAGLHKSGAEEAVDAIQQAQEKVKQLLGIKLTVQLEKSIKGTEEYGQIRVLQHYGFHRLRIEVEEYERYLATITYYMDEKTVNTMREKELLPNYVVKLAFDKKMKLSKPAKGTSEVGWVFHMGHDDKLGSTPEHLPIWYVLRSHYVECLCLRTHLVGIVQIKGCFTFKGLESFDSIDHRLAFIRRHLSHVVELVSTVLTKHWEHLQNVIENITFGVCHKKIQKDTMWIDDGTKTLHLSITSADTSLPDVDAFLQEQVRGQIEISEHMQDAVRDLRERTTEFAKKVGNKLGGNVAVGMLKEDFIIANLSVESLRYLCPPSAILATSIIHQFPIMDRNVARDCIVSSLNQQSTLIWKWHINIVTNNTQDKLKRLRFWVATDGFTDTETRDRLLVTKHGTGTIKAHVNLQEGLAVDHDILGRWESFNLVECISNDGRQLVKRIDLISCMGNMYRIMGGVEEFVEHIPTLLNVGWEAKDASLAEIDVLRGVISVYANDHFRLPPLLYSPGFGTNKMKDDRFEATLYLLLDKLADTERHLSAKTFCNISIEWASWNRFANEDGLAPLAVSTLLTTLDRWQIAAETALGQLKHSAKESVEEFTKDTKHWIFFQNVTIHFNYHIPTCGSTTAQLMDASPWMLVKLGPKWIVSCKKLIYDDKSEVLNVADEVVRYADIGANEECPLLLALRSHVCAVQANNIKSVCQNVINQFIKQFPQRAAVGDISLTLAATVPSGNTPDKFELLYHPNLPEEVMTRYLSRLEDEMIPFLGALSFIAKSNASNRLHLINSCEVVLPHVDDTSRTYHMTLQNKVLQYMLSPSSDHTKTRLPSRIMLIKAVMFALKLNPKWSDATKLKASAPEITVSEHSRHGLQLPLLSSQNVFVLELRNIEGDLLSQTEPVKEGDIAVSLLFDSKTISCVTSAQCEPRGLVRVTWTASVPSSMLPATGAAVNILIDVRWHGDPIKGSPFSVAFITFSDGCHRALGRGRLVGQAYGFIRAGTIWHQLVCHKPHSCRTLTEFGQYIRQNELHIPRHRITLVKHLRNSGWARLHHNGWQVKRLTVVRIYYRQVGLEAQSNTSVEQGKSAKQRPMTARPQLISTNSQAKTLLQRLVMKSTLRPKTAIRRQMVSTSSSVSPTKRPTSSQPCQKTTSLEPPPLEPRQRTRHVTLKCNVTKLASSYFLLQCQPTQVGTMEVQLQCPVCKEKLQSVSMTHSADQAARIIVMPGRISCKTSYVEALQHDRHADSLPVCLKVLLLDRFGNSIPVKQLEKLPKVAMSQVKVSDNRHCDVTASNADENVLDVTTAALTVAGDYVVTLDGKQVGAAVTVQPAPPCASRSKVLGNTSLNTKDGIVVVHVQLKDKFDNLVNPSRQMKDALQVTVLRDNAVWPQRQPSLDVTNDCLVCIFNFVQPSSYTLKFSYKKEPLGGKDITVYVKASPFPERLDIFYQQLLVNSGTSHTVKIRRQFVLDDTFPILRKWMTDKDALHGKPYVRFANEDGIDAGGPLRDWFRLFSKDVLNPDRGYFKETGDGCSRISELMVDDPKQTYETLELIGCMFAKAVFENKPKAS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24198	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG13289.1 global RNA-seq network