Gene detail

Detailed information of RPACG12451.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG12451.1	DEATH-ASSOCIATED PROTEIN 1	tig00003720	545015	581775	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG12451.1

ATGTCTTCATCGATGACGTCAGTGAGATCGCGTCGACGGAGCAGGTCACGGGGTGGATCGCGCGCATACAGTCGTTCTCACTCCTATTCACAAAGTGACAGTGATGCGCAGTACAGCGATGACACTTTCTTCTCTGACGATGACGTGTCGAGGCGGTCGGTAAAGCCAACAAAAGGCAAGCAACTTTCGCGAGTACACCCGTATGCCACCAAAGTCAACAAGAAAAGAAGCACACTTAATAAAAAATCAAAGATATTGACACCGCGCAGTGATAACAACATCAAACAGCGCATGCAGTCAGCACGTAGGGCAAAGTTCAATGAAATACGCAATGAACTTGAAGAGACGCGGATGCAGCTCCAGGACCTGCAGCAAGAAAACAAATTACTGATACGTCAGCAGCGACTCCAGGACAAGGCCATCATGAAGTTCCAGGCCGCGGAGAACGATCTACCACAGCTAATGCGCAGACACTCGGCAGAGCTGCACATGGCCAAGGCGCAGCTACGACTCCAGAAGGAGCGTAACCGCAAGCTGGAGCATCAGCTCCACGACGCCAGCGACGAGCAGGAAAGTACACGCAAACAGCTGGTGCGCATGAAGAAACTTGTGGAGGACAAGAACCTTGGAGAGAGGGATGAGTTGAACCGCAAACTGACGAAGGCCGAGATAGAACTGGAGGACACTGGCAGGAAGAACGCGGAATTGCAAAAGCACGTGGAAAACCTAAAGAAAAACCATCGCCATGAGATCGGCATTGAACGGGCACGACACAACGAAACAAAGCAGGAGTTGTCAGAGTTGAAGAGGAAACTCGACGATGTGCAGTTGCAGTTGAAGGAGAAAGAGAAGGTATTGGACATCAAGAACATCTACAGTAATCGCATTATGAAGCCGCCCCACAAACTGAACTCATCCGTGTCGTCTAGTCCTGCCATACCCCAATTCAGGAGTCGCAAACACAGCGACCCCCTTCTCAATACATCTCGCACTCGAGCGAAACAGTATGAACAACAACGGCGCGAGGAGCATCGATTGCGGGAGGAGGACATCTTTGATGAGGACAGTGATACTCAGGAGCAACAGCAAGAGCAGGAGGCACGAAGGCGAGCGGATGAGCTGTATGAAGAACAGCAGGAGGCAGCTCGCAGAAGAGCAGAGCAGGAGGAGCATGACAAGGAGTTGGAGCGTCTCCAAGCTTGTGGAGACACTGCGCAGGAGGAACGACTGAGACGGGAACGCGAGCAACAGGAGGAACAACAACGGAGGGAGGACAAAAAGAAGAGACAAGAGCAACAGAGAAGGGAAGAGCAAAAGAAGACGGAAGAGCAAAATAGGAGTGAAGAGAAGGACAGAAGGGAAAAACAGCGGCAGGAGGAGGAGGAGCAGGAGCGACAATGGAGGGAAGAGCGAGAAAAGCGCAAGCGGGAAGCTGAGGCATATGAGAAGGAGCAGAGGGAGAAGGCGGAACGGCTGGCACGGGAAAAGGAAGAGGAGGAGAGGCGTCTGCAGGCCGCAGCTCATCAGGAGAATCACGAGGAGCGACAGAAGAAAGACTTGCTCCTGGCACGGATGCGGGAGCTGGACGCCAACAAGGAGGGGAGCGGCTCCAGACGCGGCTCTACCAGTCTTGCCTTCAGCAAGCCAGTTGAGAACATGCACCATGGACTCCCCGCATACGAGTCGCCCGTGGGCAGGTCTCGGGCACGTCACCTCGGTAATGACCAGAGCGATGATGACATCACCGGCTACCAGCCATCATTTGTGCCGAAGAGTAAGCGCAGCGCAGGAAGTACCGGTCAGTTTAGGCAAGGCAAGAAGTCTGACCTCATGACCGAGTTGTTTGGCGCTAGTTCGACCGTTAAGACATCCCCGGTGCAGCAACCGCAAGATGACGATCAACCGTTTGTGACAGCTATCAACAACAGCACGGTGACGCGTCACCATGACACGTCAACAACACTATTTGGTATAGGGAGTGCGTACCTTGAAGATGATGTACCTGTGCCTCATAGTCAGGCCTTGCTGCCGCGGCGCGGACGGCAACCAGCAACAACAATTCACACTCGATCCACGATAAATGCTATTGATGGCAATGACGATGATTTAGAAGAGGTGATTTTGTAG

Transcript

RPACG12451.1

ATTCGGCATGATGCGTACATTCTCTCTTAGAAATTCATGTCGCATAGAATGGATGTGAACTACGACGCGGCGCATGTTACGTGTTAGAGGATTCTGTCAAGTAATTGGTAACAAGGACCACCAAAACGTACACGTTTGATAATACCCACGTATATGTTAATTGGGTGGTATTTCTGCAAACAAGGTACATCATCAACATACAGTAAACAAATCGGACAAGACTCAAGAGCTGTATGCCTGCAAGAGAAAATGAAGTTCTATATCAATGATTATCATATAGCAGGATGTCTGACAATTTTACAGTGATGACACAAAAGCTAACCAGAGACTGATATTTATAAGAGGTCGGCCAAGTATCACTGACATAACGATATACCACAATGTCTTCATCGATGACGTCAGTGAGATCGCGTCGACGGAGCAGGTCACGGGGTGGATCGCGCGCATACAGTCGTTCTCACTCCTATTCACAAAGTGACAGTGATGCGCAGTACAGCGATGACACTTTCTTCTCTGACGATGACGTGTCGAGGCGGTCGGTAAAGCCAACAAAAGGCAAGCAACTTTCGCGAGTACACCCGTATGCCACCAAAGTCAACAAGAAAAGAAGCACACTTAATAAAAAATCAAAGATATTGACACCGCGCAGTGATAACAACATCAAACAGCGCATGCAGTCAGCACGTAGGGCAAAGTTCAATGAAATACGCAATGAACTTGAAGAGACGCGGATGCAGCTCCAGGACCTGCAGCAAGAAAACAAATTACTGATACGTCAGCAGCGACTCCAGGACAAGGCCATCATGAAGTTCCAGGCCGCGGAGAACGATCTACCACAGCTAATGCGCAGACACTCGGCAGAGCTGCACATGGCCAAGGCGCAGCTACGACTCCAGAAGGAGCGTAACCGCAAGCTGGAGCATCAGCTCCACGACGCCAGCGACGAGCAGGAAAGTACACGCAAACAGCTGGTGCGCATGAAGAAACTTGTGGAGGACAAGAACCTTGGAGAGAGGGATGAGTTGAACCGCAAACTGACGAAGGCCGAGATAGAACTGGAGGACACTGGCAGGAAGAACGCGGAATTGCAAAAGCACGTGGAAAACCTAAAGAAAAACCATCGCCATGAGATCGGCATTGAACGGGCACGACACAACGAAACAAAGCAGGAGTTGTCAGAGTTGAAGAGGAAACTCGACGATGTGCAGTTGCAGTTGAAGGAGAAAGAGAAGGTATTGGACATCAAGAACATCTACAGTAATCGCATTATGAAGCCGCCCCACAAACTGAACTCATCCGTGTCGTCTAGTCCTGCCATACCCCAATTCAGGAGTCGCAAACACAGCGACCCCCTTCTCAATACATCTCGCACTCGAGCGAAACAGTATGAACAACAACGGCGCGAGGAGCATCGATTGCGGGAGGAGGACATCTTTGATGAGGACAGTGATACTCAGGAGCAACAGCAAGAGCAGGAGGCACGAAGGCGAGCGGATGAGCTGTATGAAGAACAGCAGGAGGCAGCTCGCAGAAGAGCAGAGCAGGAGGAGCATGACAAGGAGTTGGAGCGTCTCCAAGCTTGTGGAGACACTGCGCAGGAGGAACGACTGAGACGGGAACGCGAGCAACAGGAGGAACAACAACGGAGGGAGGACAAAAAGAAGAGACAAGAGCAACAGAGAAGGGAAGAGCAAAAGAAGACGGAAGAGCAAAATAGGAGTGAAGAGAAGGACAGAAGGGAAAAACAGCGGCAGGAGGAGGAGGAGCAGGAGCGACAATGGAGGGAAGAGCGAGAAAAGCGCAAGCGGGAAGCTGAGGCATATGAGAAGGAGCAGAGGGAGAAGGCGGAACGGCTGGCACGGGAAAAGGAAGAGGAGGAGAGGCGTCTGCAGGCCGCAGCTCATCAGGAGAATCACGAGGAGCGACAGAAGAAAGACTTGCTCCTGGCACGGATGCGGGAGCTGGACGCCAACAAGGAGGGGAGCGGCTCCAGACGCGGCTCTACCAGTCTTGCCTTCAGCAAGCCAGTTGAGAACATGCACCATGGACTCCCCGCATACGAGTCGCCCGTGGGCAGGTCTCGGGCACGTCACCTCGGTAATGACCAGAGCGATGATGACATCACCGGCTACCAGCCATCATTTGTGCCGAAGAGTAAGCGCAGCGCAGGAAGTACCGGTCAGTTTAGGCAAGGCAAGAAGTCTGACCTCATGACCGAGTTGTTTGGCGCTAGTTCGACCGTTAAGACATCCCCGGTGCAGCAACCGCAAGATGACGATCAACCGTTTGTGACAGCTATCAACAACAGCACGGTGACGCGTCACCATGACACGTCAACAACACTATTTGGTATAGGGAGTGCGTACCTTGAAGATGATGTACCTGTGCCTCATAGTCAGGCCTTGCTGCCGCGGCGCGGACGGCAACCAGCAACAACAATTCACACTCGATCCACGATAAATGCTATTGATGGCAATGACGATGATTTAGAAGAGGTGATTTTGTAGCAAGAACAAAGCCATGTAGCAACATGTTAAGTAATCTCACGTAAGACAGTATGGTTTTGCTGAAAGAATGTAATTTATTCTGTTAAGTATGATGAGAGTTATTCCACCCAGTGTTATATATTATGTATAGTGGGTTGATTGTCAGGAATGATTATTCAGAGAGAATGTCTTATGTAAACCGGTAAGCAAGAGATTAGACACTTTTGAAATTTACTTTTTTACCATACAACTATACTGAATTAATTACTTAGAGAGAAACAAGACAATGTACACTAAGTAGATTTTATTTACAGAAAGTGGTAGAAGGTTGATGGTTATTGTCATCATGACAGTTTATTAGTGTTAAGTCAGACTAATTTACACTCAAACAATTGATTAGCATTTAAAAACACCACAAAGCCGTCATTTGATATTGTACGATTGATGAGTGAAATGAGGTCAAAACCTGTCTATGAAATATGTATACCAATTCGCAAGGTAAAATGCTCAGGACGCTTATGTATGATATTGGTATAAGTTTGTTTACATTTCTAATAAGTTGCACAGACACACATGCATGTTTGATATATATACTTTAATAATATACGCATCGATTAAGATATTCGTAATAAACCCAAATAATCAAACTGCAAATATAACGATTATATTCTAAACAGAAAGTATTTAGATTCGGAAATGACCACTCCTTTCAATGGAAATTTGCAAGGAGTGGACATAAGTATAATACATGCAATGAGAGTATAACTGAGTAGGCTTTCAGAAATATCGTTCAGGGTAATGTACATACTTGGACTTTGCTATGTAAGATTTCATATGCTGTTGGTGCTTGAATTTATTGGTATCGACGATTGCTACAAATGGCAGTGTGTGTAAATATACTGCCAGCATTTTAAAAATATAATGTATATATTGTTGTGAACATTACCACATATTTTTGTATGTTGCCCCAGTGTTTTGTGACAGATTATTATATTCACGCATACTGAATGGAAATTGGTTTATATATGTATATAAAGGGTACATATTGTTCACTTTGGGGATGGAGATAATAACTTATGCATTGTTAAATAGGACATGTTATGGATTGCAAGATTTAAACCTAACTAGTAACATCAGTAACTAGCTTACAAGTGTTTTTATTTATAAAACTAAGCTGTGTATAATTTAAAACTTACCACATTTACCAGTTTCAAAACCGTTAGTAACTGTTATGACAATCTTCAGCTCTTAATCATCAACAAATTATACATTGATTTAATTATTGAACTAGATTATTGATGTATCATTTTTCAAATGTCCCATTCTTGTTTCAAATGTTGTGTGTTACGATTGGTTTAAATTTGTGTCACAATGTCAATACATTAAAATGCTAGTTAAATAGAAGTGTCAGCTATTTGAATATAAAAACCTTTGGGGCAGGGACTTTCTGTTTGACCAAGTTTTATTATAATGTAACACAAATAGTGATGGAACAAACAATATAAAGTCATCCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15228	DAP	Death-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024130	Family	DAP1/DAPL1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13177	DEATH-ASSOCIATED PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0010507	Biological Process	negative regulation of autophagy	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0070513	Molecular Function	death domain binding	Interproscan
GO:0097190	Biological Process	apoptotic signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG12451.1 global RNA-seq network