Gene detail

Detailed information of RPACG12248.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG12248.1	PROTEIN ARGININE N-METHYLTRANSFERASE	tig00003592	575683	596521	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG12248.1

ATGTGGTTCGCTGTTGCGGTCACTCCGGTTCAACTTTTGCGACAACGGCCAAAGCGACGGAAATCTCCGACCGTCCATCGGTCGTTCAGTCTGAATGCCACCATCAGGAGGGCGCCAGTGAGGGAGCATTTAGTATGTAGAACAGTTAGGGAGCATTCTGTGTACTCATCAACAAGTCGCACCACTATGCAGGAACAGTACGATTGTGCAGCAGCACTATGTTATGCGGAATCGGTGTATTACTACGATGCGCGGACACAGGAGTGGCGTAGACATTGCACTTATGGACTGCCAGATCTGCAATGTAAGAGTCCCCAACATGTACATCGCACGCACTCCCAACGTCTTGCTACCTCCGACGGCAAGTTTTCATCACAACTGATGCTAGGCAACAGCCGTCATGTGACGAAACAGCCAAAGAACGGTCTGATCCATGAGAAGCTCGTTGCAACAGTAGCTCCAACATTGCCCCAACTCCCCCCAAGCCAAGATGGCCACACGACACATGCTGGGAAACCCCGCGACGAACAAAACAACAATGGCCTCCTGCCACAGCTGAAGCAGAATGAGGCTCTAACACGACAGCTCAGCTACGCCACCTCAAGGGTGTCGAGAGACTCACACGATCGCCGATCCGGTAGCGACGATCGGAGTAGCAACAATGGCTTCCCGATGTCACCACAAGAGGCCCTGCGTCACTATCGCAGCCAACTGTCAACGTTTGAACACACTGAGATACTCGAGTTCTCACAAGTCTGGTATCTCGGCCTCGATGCGAAGAAGCTCGAAGCTGCCCAGGGGGCAGCACAGAACAATGGTTATGACGACGAGAGTGGATCCTACATCAAGGTGTTGGGGGATCACCTCGTCTACAGGTATGAAATCCTCGAGGTATTAGGCAAGGGGTCATTCGGTCAAGTGGTCAAGGCCCACGACAACAAGACTGGCCAGTACGTTGCTGTCAAGATCATTAGGAATAAAAAGAGGTTTCACCACCAGGCGCTGGTCGAGGTGAAGATTCTTGACGCCCTACGCAAGAAGGACAAAGAGGGTGTTTACAACATGATTCACATGCATGAGTACTTTTACTTCCGCAACCACCTCTGTATCACCTTTGAATTGTTGGGGATGAACTTGTACGAACTGATCAAGAAGAACAACTTCCAGGGATTCAGCGTCCCTCTCATCCGTAGATTTGCCAGTGCCTTGCTGCAGTGCCTGAAACTCCTGCAGAAGGAACGCATCATCCACTGTGATCTCAAGCCAGAAAATATTTTATTACGGCAACGAGGTCAGAGTTCGCTGAAGGTCATTGACTTTGGGTCAAGTTGCTACGAACACCAGCGAGTGTACACCTACATACAGAGTCGATTCTACCGTTCGCCCGAAGTCATCCTTGGTTTGCCCTACTCCATGCCCATTGACATCTGGAGCCTAGGCTGCATCCTCGCCGAGTTGTTTACAGGCTATCCCCTCTTCCCAGGGGAGAATGAGGTGGAGCAGCTGGCCTGTATCATGGAGATCCAGGGGCTCCCACCCCAGAACATTCTCGATCAGGCGACGCGCAGGCGACTTTTCTTTGACTCAAGAGGCAGCCCTCGCTGTATCACAAACAGCAAGGGAAAGAAGCGACATCCAAACTCGAAGGACCTAGCTCAGGCCGTCAAGAGCACAGATGCCCAGTTCCTCGATTTCATGAAACGTTGTCTCGAGTGGGATCCATCAAGACGAATGACGGCAGAGCAGGCAGCGCAGCACGAGTGGATCAAGGAGAACACGCATCGGACACGAATGTCTCGGGCGTATCCACGGCGACAGTCAATACTGCGCTCCTCCGAGAACAGTGACAAGACTGGTGGTGACCCCTACATGACTACGTCACAGGCTCCCATAAAAGAGAAAACAAGATCGAAAGATCAATGGTCAATGTCAAAGAAAACTTCAGAGAAGGCGACCAGAGAGAGACTTCATCCTATCGGAGTGTCAATGGACAATGATGAAACAGAACAGAAGAAAACAGGGGCAACTGAGAAGTCAAAGGTCATTGAGATTGAGCACACAGAGTTCAGCGTGGAAGAATCGAGCAATTTCCTGCCACCAATCAACAAATGA

Transcript

RPACG12248.1

AATTGTGTGATAGTTACTGAATTTGATTCAAGAAAGCGTTGAAACATATCGAAAGGAAAAACTGAAGACTCTGGAGTCAGAAAGCTGTATGAACAAAGACAGAACAAGAAGATAGAAGACACTACATCTCAACAAGAACCATGTGGTTCGCTGTTGCGGTCACTCCGGTTCAACTTTTGCGACAACGGCCAAAGCGACGGAAATCTCCGACCGTCCATCGGTCGTTCAGTCTGAATGCCACCATCAGGAGGGCGCCAGTGAGGGAGCATTTAGTATGTAGAACAGTTAGGGAGCATTCTGTGTACTCATCAACAAGTCGCACCACTATGCAGGAACAGTACGATTGTGCAGCAGCACTATGTTATGCGGAATCGGTGTATTACTACGATGCGCGGACACAGGAGTGGCGTAGACATTGCACTTATGGACTGCCAGATCTGCAATGTAAGAGTCCCCAACATGTACATCGCACGCACTCCCAACGTCTTGCTACCTCCGACGGCAAGTTTTCATCACAACTGATGCTAGGCAACAGCCGTCATGTGACGAAACAGCCAAAGAACGGTCTGATCCATGAGAAGCTCGTTGCAACAGTAGCTCCAACATTGCCCCAACTCCCCCCAAGCCAAGATGGCCACACGACACATGCTGGGAAACCCCGCGACGAACAAAACAACAATGGCCTCCTGCCACAGCTGAAGCAGAATGAGGCTCTAACACGACAGCTCAGCTACGCCACCTCAAGGGTGTCGAGAGACTCACACGATCGCCGATCCGGTAGCGACGATCGGAGTAGCAACAATGGCTTCCCGATGTCACCACAAGAGGCCCTGCGTCACTATCGCAGCCAACTGTCAACGTTTGAACACACTGAGATACTCGAGTTCTCACAAGTCTGGTATCTCGGCCTCGATGCGAAGAAGCTCGAAGCTGCCCAGGGGGCAGCACAGAACAATGGTTATGACGACGAGAGTGGATCCTACATCAAGGTGTTGGGGGATCACCTCGTCTACAGGTATGAAATCCTCGAGGTATTAGGCAAGGGGTCATTCGGTCAAGTGGTCAAGGCCCACGACAACAAGACTGGCCAGTACGTTGCTGTCAAGATCATTAGGAATAAAAAGAGGTTTCACCACCAGGCGCTGGTCGAGGTGAAGATTCTTGACGCCCTACGCAAGAAGGACAAAGAGGGTGTTTACAACATGATTCACATGCATGAGTACTTTTACTTCCGCAACCACCTCTGTATCACCTTTGAATTGTTGGGGATGAACTTGTACGAACTGATCAAGAAGAACAACTTCCAGGGATTCAGCGTCCCTCTCATCCGTAGATTTGCCAGTGCCTTGCTGCAGTGCCTGAAACTCCTGCAGAAGGAACGCATCATCCACTGTGATCTCAAGCCAGAAAATATTTTATTACGGCAACGAGGTCAGAGTTCGCTGAAGGTCATTGACTTTGGGTCAAGTTGCTACGAACACCAGCGAGTGTACACCTACATACAGAGTCGATTCTACCGTTCGCCCGAAGTCATCCTTGGTTTGCCCTACTCCATGCCCATTGACATCTGGAGCCTAGGCTGCATCCTCGCCGAGTTGTTTACAGGCTATCCCCTCTTCCCAGGGGAGAATGAGGTGGAGCAGCTGGCCTGTATCATGGAGATCCAGGGGCTCCCACCCCAGAACATTCTCGATCAGGCGACGCGCAGGCGACTTTTCTTTGACTCAAGAGGCAGCCCTCGCTGTATCACAAACAGCAAGGGAAAGAAGCGACATCCAAACTCGAAGGACCTAGCTCAGGCCGTCAAGAGCACAGATGCCCAGTTCCTCGATTTCATGAAACGTTGTCTCGAGTGGGATCCATCAAGACGAATGACGGCAGAGCAGGCAGCGCAGCACGAGTGGATCAAGGAGAACACGCATCGGACACGAATGTCTCGGGCGTATCCACGGCGACAGTCAATACTGCGCTCCTCCGAGAACAGTGACAAGACTGGTGGTGACCCCTACATGACTACGTCACAGGCTCCCATAAAAGAGAAAACAAGATCGAAAGATCAATGGTCAATGTCAAAGAAAACTTCAGAGAAGGCGACCAGAGAGAGACTTCATCCTATCGGAGTGTCAATGGACAATGATGAAACAGAACAGAAGAAAACAGGGGCAACTGAGAAGTCAAAGGTCATTGAGATTGAGCACACAGAGTTCAGCGTGGAAGAATCGAGCAATTTCCTGCCACCAATCAACAAATGATGGTTGGCGCCATCTGGTGGTTAGCTGTATTTACAGTGCTCTCTACTATTTCATGATACACTGTCCGTCCATGCATTGTGTCTTGTCCATGATGTTTCATCAGTTTTCTTTCGTTGCCCGGCAACACAACACATTCTAGGGTTTGTTCTAGAGACTGTGTCTTGCAACTGGGAAATATTTATCACATACACTTGTCATTTTGTTCACATTGTGTAGTAACACAAAATGTGTTCACACTACAGTGGTGCCCCTGGCAAGCAACTGCATTGGTACTTCATGAATTGTGGCTTAACGAAGTGGCAGTTTAAGAAAAGAAAGTACTTTAAGAAGTTACCTGACATGATGATATTCACTCAGGGTTTTGTTCCCTGTGCCCCCAGAAAAATTATAATCCTGCTTTGCTGAAGTAATGACAACAGACTACTTCTGCTGTTTTGTGATGAATTGTCAGTTGGGATGATGCAGGGTTTTCTGTATAAAGTCAGAGAACTGATGAAGATTTTTGTACAAATTTGAATTAAGTCTGCATCTTGAATTGTTTTTGTCGAGAAACTTGTTGGTGACAGAAAGGTCGTAGCACTCATGTATAATATAAAGCACCATCAGTGAAGTTCGGTACTTGCGTCGTCGTGGTAAATGGTGGTATTCATTTTTCTATTTGATTTTATCGAGCATGTATGGATTGGTTGAGAATAACTCTCCATGTCAGTATTATTATCATCACTGAGAGGTATCATTATGGATATTTTATATGTGTAAAAATGTACATTGTTGTTGCAGAAAGTGTCTGTATTTAATATTCATTGTAGGAGATGCAGGACTAATTAACAACACTAGCACAGGATCTGCGAGAAATCTCGCAACAAGCGATTATGCTGAGTATAAAAGAGCGTGTAATACACTTGTGACAGTGAAAAGTTCTTGCGACGTGCTCCTTGGTATATATTACAGTGTCAATGATTTGTTACATGTTACAGGAGAAAATTCTTGGTACATGACCAAGTACTTGGGTGTACTCAAGTGTAGTTATTTGATGGATAAACATTATGCAATGTTGATGTTATGATAAGAGGATGCTTTGCACTAGTCAAGACTAGACTATTTTATGGGTCGCAGTTAAGTATAATTTTAGGGATGTCTACGACACAATATTAGGATGATTACTGGAACGGATCATTGTTAAATCAGCATATCGCTGTGCAATGTCGCAAATTTATTCTTATTTACGTTTGATTAAAATAGAGTAAACTAACTCGTTCAGAGAAACAATGCAGTATGAAAATATGCTACATAGCAATTGTTCCATATTTCCTTGAAAATACAATTTTTTGGTTTCCATTCAGTGAAGCCAAATGTCTCAGGTTCTGCAAAATGTCTGTCCATGTATTGAGAATCAGCATGAGGTGATCATTATTAACAGGAATTTGTTAAATGTGGAACGACACAGACGTACAACACATTTGGGATTCAAGTTATGAAAAAAACCCAGTTCATTCTTTTTAAAAGCAATTTGTGTGACTTGGATATTTATTCTAATAGTGAAGACAAAGAACAGACATCTTTGGTCCAAAATAAAAAGACGACTACTTGACAGTGTAGATTTAAATGATCAGTTATTCATTTTAAGAGGTGGGAAGACATGGTTTAATGACATCAGCAAATCTGTGATATATAAAAGTAATTCTGAGGGACGCCTGTCAGTATTGAGTTGGAAGTTCCTTGCTAGAGTGCAGAGTAGGTCAGTTAGTGTATATATGATGCACTGTACATAGCTACGGCGATACAACTTGTCGTACAGACCCTGGGAAACATAGCGGTGAATGCTTTGTGTTGACAAAACTCTATAATCTCATCGCAGCTATCTTGCTGTTACAACAAAGTCCTATTGATTATATTTGTGACATACGTTACATTTTATATCAGCGCATAGCCATTTGGCCGATATCAGTATCACTTAACAGTTTCAACATTTCTAGCAATTTATTCAACTTGTCCAAACTTGTTATTGAAATATATCTATTACTCTGATCTGTGACCCTATATTTGATTGCTATGAAAATAACTCGTGACCATACTAAGCTGTGAGATGAACGCCTAAGGCAAAATTTTGACTCACTCAGCTCTTGAGATGTTGGCGCCTGGTGGAAGTAGAGGACGTGGCACAAAACAGGAAAGGCCATCTCGTACAAATGTGATTTTTTTGTAAATTGTGCACAGTTTGATGTAATATTCAACACTTATTTTATGCAACATAAAGTCACCCGTGTGGCATGTAGTATGATGTTAATTCACATGAGAAGTGAAGTAGGAACATAAAGCGTATGGTTTCTGTCTGACAAACAGGCCAACTGTTGGGCAGTTTACTGAATCAAGGTGAAATAAATTGTATCGTATTCTACAGCTTGGTTTCAGAATGTTATAGATTTTGTATCATTTGACAAGACTGTGATGGTTTTGCATAGCCAAAGGTGTTTCGCCGAGCTACAGTTTGATGCAGAGGTTTCAGGTTTATCCAAAGATATCTCCCAACTTGTTCCAGACAAACTGTAAAACAGGTCACATTGAAACCAAATGGGCTTTTGTGCAGCAATTTATAAATTTGTGTAAACTTTTGAGCAATTTTCTACCAGAACTCAGAAACGCTGTATTTGTTTGATGTTTCTAAACATCATCATTGAATGTGTCAAGTTGTTTACAGTGCGTTCTCAGTCACCATGGAAAACCTTCAACATCAATAAATGATGTTTGTTGTATTGACAAAGGAATGGGGCTGTTACCAATGCAAGAAAACAGTGTTCTATTGAAGCCAATGAAACTGCAGTTGTAGAATATGGCGAACCACAACCATGGTTGTGTTGATTAAACCAAATGTCAGAGTAAACACAGCACTCAGCATGTGTCTTAACACAAGTCTAGTCTACTTCAGGAAATGTTTGTATCTTGTCAAATCTGCTCATATTGCATGTAGTCAAACAGGTGTAAAGTAATGAAATTACTTGACACTGTGGCAAATATCTGTTGATTGCTTGTGTTGTCTCTGTCTCACGGCAATGGGCTGTGGGAAACGGAGAGGTGAAGCCTGGAGATATTTTGTTTGTGACTTGTGCTGACTACTCTATGTTCTATATTCCTGCTATTACACTATGATGTTTCAATGTTGTTGTTCATATTTTATGACTTTGTAACAGAAAAGGTACATTTAGAATCTTTTTGTCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06325	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan
PF07719	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR025799	Family	Protein arginine N-methyltransferase	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016274	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216	Biological Process	peptidyl-arginine methylation	Interproscan
GO:0035241	Molecular Function	protein-arginine omega-N monomethyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG12248.1 global RNA-seq network