Detailed information of RPACG12034.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG12034.1UV-STIMULATED SCAFFOLD PROTEIN Atig00003520285073286865-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09740DUF2043Uncharacterized conserved protein (DUF2043)FamilyInterproscan
PF20867UVSSA_NUVSSA N-terminal domainRepeatInterproscan
PF21009SBSN_GxHH_rptSuprabasin, GxHH repeatRepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR018610FamilyUV-stimulated scaffold protein AInterproscan
IPR049408RepeatUV-stimulated scaffold protein A, N-terminal alpha-solenoid repeatsInterproscan
IPR049431DomainUV-stimulated scaffold protein A, C-terminal domainInterproscan
IPR049502RepeatSuprabasin, GxHH repeatInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR28670UV-STIMULATED SCAFFOLD PROTEIN AInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000993Molecular FunctionRNA polymerase II complex bindingInterproscan
GO:0005694Cellular ComponentchromosomeInterproscan
GO:0006283Biological Processtranscription-coupled nucleotide-excision repairInterproscan
GO:0009411Biological Processresponse to UVInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG12034.1 global RNA-seq network
TOP