Gene detail

Detailed information of RPACG11666.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG11666.1	OS10G0105400 PROTEIN	tig00003271	513512	516412	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG11666.1

GAAAAAATATTTTTAACGATGTTCGACATCATTTTATTTAGTTTTTTAGTTTTAAATAATACCACGAGGGGGCGTAATGTGGCCTTTGAACTCCATCTAGATCATCACATATTCACTAGTGTACCACTTGACCTCTGGCCTAGATCGTGACCAATGATCTAGACCTAGTTATGCCATCCATATACATGTAAGTCTCCCGCATTCAGCGGGAGACTCCCGCAATTACACCAAATCTCCCGCACTCCCGCACGGGGGACCAGATCTCACGCAATTTCAACAAAACCTAAGTGAAAAAATTTCAAAATTAATTCTGATCGGCCGTTTTCTATAACACGCTTGGGCTTGCAATATAATCACTACGTAATCTTGCACCTGGTCTCGGTAACACAAATGTGTCTGGGCTTGCCGCGTTACATCGATTTTGATTTGGTGTTTGGCCCACGTGATCTTCAAATTGAATGGTATAAGGCGTCTGATTCGTCGATGTTCGTTGCTCTGAAACAACGGTATGGCGAAGCGCGGATGTGATTCGCCGTGCGCTAGTTCTGCTAAGAAAAGAAAGTATGCTACAAAATATCAACCGGAATGGGCGACTGAGATGGATTTTATATGCGGCAGTGACAAGGGAACGACTTTTGCGTACTGCAAAGTGTGCAACGTGCACATAAATGTATCGTTCGGCGGCAAGTATGACATTGTTCGCCATTCGAAGGCGGGAAGTCACGTTGCCTTGCAGAAAGCGATGTCGTCAAACAAGCAACTGAAATCGTTCTTCGGAACTACGAAGACAACTGATCTGTCAGCAAATGTCCTTTCCGCCGAGGTAAAGTTTTCCCAACTTGTCGCGGAGCACAACCTGCCATTTTCCGTTGCTGACCACTTCACAAAGCTGGCGAAGCGTTTGTTCCCAGATAGCGATATTGCGGGAAAATTCGCGTGCGGCCGTATGAAAACTACGATGATCGTCAAGAAAGCGTTAGCCCCTCGTGTTGATGACAACGTTGTGAAGCTGTGCCGGAGCCACAGATTTTCGTTATTAACTGACGAAAGCAATGACCAGGGTGGCGAGAATACACTGGCGATACTAGTCAAAGAGTACGACCCAGAGATCGCCAGGGCAGTGACACGATTTGTCGACATACCGATATGCAACATCGGAACTGGCGAAAACATCTTCCAAACGATCGACAAGTGCTTCAGTGTTATGAAAGGCCGACACAACTCTGTGCTATGGCGGATCAAGAATGTACAGCCAGATGTCCTCGACATTGGGTGTATCTGCCATCTGGCAAATCTGTGTTGTGTGCATTGTGTCAAGCAGCTACCGTTGCCAGTGGAAGAGATGCTGATTGATGTGTACTTTAACTTCAGCCACAGTGCCAAACGCAAGGAGGAATATCGGGAATTTTTAGAGTTCACCGACACCGAACCAATGAAGATCCTCAAGCATGCCAGCACACGGTGGCTAAGCTTAGAGAAATGTGTTAACCGCTTTCTCCAGCAGTGGCCGGCACTGCTAAGCTACTACCAAAGCCACGAAGATCGTGAACGCCCAGGCCGTGTCAAGCGATGCGCTGACTATCTTGTCAGTGTGGAAATGAAGGCATACTTCATGTTCCTGTCATTCATCCTTGAGCCCTTGAATGGATTCAACACAATCTTTCAAACGGATGCAACGCAGATCGCCATCCTCATCCCCGAGATGAATCGCCTTCTTCGACTCTTCATTGCAAAATTTGTCTTGATGCGTGTCATCAAGACTTTGTCAGCAGACCTGACAAAGGTGTCGTTTGCTGACAGGTCTGTGCAGCTTGATGACGACATCCTCGCTGTTGGCATGGCTTTGCGAACCATGCTGGCAGACAGTGATGACGACTTGTGAGACAACACCAGAGCACGAATCTTCACGAGTGTGCGTCGGTTTTACATCGCCATCGTCGAGAAAATGGTCAAATGGTCACAGTGCTAAAATATCTCGGTGTATTGAATCCAGACCCAAGGTTGCGTGACACGTGGAGTCCAACGATGTTGACAGATTTGGCCACTCGTTTCAGCCTTGTGACAGCTAATGAGATTGATGTTCTCGTGGAGGAATTCCGAGTCTATCAACTGAGTCCGGATGATGAACTGCTAGCCAGTGACAGCCGCGTTGACACCTTCTGGGCTTAAATCCCATTTCAGCTCACACGTGTGATGACGACGCTGTCTGTTATTGCACACAGCAACGCCGACAGTGAACGCGTGTTCTCAATGGTCCGGAAGATCGACACAGACTCGCGCTCGCAGCTTGGCAATGACATCCTCCGTGCACTGCTGTCAGTAAAGATCAACGCAGACGATCCATGCTATGCGTTTGTGACAGACAAGGAGCTCCTCAAGACGGCCAAGGTAGCGACATGGAACTATGTGCAAGAACACCAGTGACTGTGTGTGTGCTGTGTGACACGGAACGTTTTTCTTTTGTGGTGATGGATTTTTGGTGATGGTGTGTACGTATGTGAGACCGAT

Protein

RPACG11666.1

MHIALPFAVLRFDKRRLEAQGDVLRDGDRSQQSRTGNGSVLGTVSSRRYTASGRVTDTSADCVYASLVVELPDTSIVTAGGWDDIALNRTHDELAKYDVICQRALTQVLVAWEPFDDPETDVVNKSQHNFDTTNSRYQVAIGSTPGGSQLHPFEDVNDSKLFVVVRGLDLSRERHVFATVKGFNAAGLYSTASSNGVYVSRLSSGKTPLRESYVFDGNDKSKDADYQNHIEGLSAHWDFSGDPCPIDQYEWAVHRFDGAVVLNMTQLPADATRAEADELPLKDGESYFVVVRATNKLGFVQTIHSDGITVQVQPLWPGNVRDGDLIGKDLNFQESITSISANWDGFGQSREGDVSIGKHQKIDHYEVALGTDRRFSKTRNNVRPFMNIGLNITWTFSNLRLVPRTATYYVTLRAYSVSSAVVEVTSNGIKVGYGSTLISTGQVELARYVHSATELSFSWSGFKFSLPVKFYTWGLDNAISDELILNCSSLVKTEEDGTIVQSTNNSRLFDVHPLTSVNLDTYVKQSGLSLTQGKTYRVVVIATDEAGACVATSGVFTVDTTAPEDGHLGVGPETNMNLLYSSAADTFIVWWTGFGDSESSIKDIKIRLLNGGDDCTASDVANMAVVVDATELSSNSSSYQFVNIKLQESHTYFIELLVTNGAGLTRSALSRPLLLDVVSPTAGDIKNGDKFNVDVSYQDSVTDIHGVFLYLPSAKHAACPRRMYSLTSQDSRWTPLVHKYLRGFQHTKRAGVAFRDFQLSYTKQGMAVVLRRDVKKSQMLSGAIQTDADISKGATYSYDIRAASGSLRAVTSVVFFDGPKGVFADYTPVLFDSDASNLVDNGWRSNGMRVVEPGLPGDTSLNVPDDDVQEWRGFGFQIHPSELDGTGDTTAKMDGEILNTHVTKKCLMVSTDTSYEGETSDWVVLWAKALNGTMHTVINLDFNPADHSHHYKLIVTGQYTENDNVSENIAPILTSYAIVLFICFTRQLENWELKLYIDGRQRALIAGAASVSERTQITLGVYNRHGWVTPLDDVFHPPKTTAVFSNLEFPAPSTELCRFGDPFRGSSRPVVEFQAAVGTSANAADVSPYKTILHPCISCQHACDQFICNKTCHAEAMQVVHIAITGLFLEPKQTGGVGNETLLQPYYITVKAITGSGRSVTASSGGVYIDTTPPVFELIFHVDLSWSQAEPSTFQGDNSSIAVYYEVFDEESKVVETWWAIGSTPGDADVQPLTSIGTQSFMMNRSLEGLLLENHTYYVTLVSVNGAGLKTTNTSQGVTILTVSPDADTIMTATEDTEPFDATSTSPSAVKTSRQDSVHVAWEKAPEKEHIDGVYFSVGSEEGKDDIYPEEQVGMGEVSGEVTLSSGGITVIGGNETSFGSRRRKRDLTGEFHMEPGRTMRVHLRACSKAHICRQIPVKPILIVRDSDTIAQTEGGQLIMTLEKSTPNKKIVVKAIKLQRDGTMLVGGFLSTDDVATQYLSAASDKFKTFIVNPESTQNKSDRYIRNRLRGWDGQTMFIATLPDQTIDGPLSITMSFDKTRVRNGQQIQPRLLRWCADEEIWIDAGRTCDSDGGDIRVDWEKGVFMVKVCHNAQVCRQHKNGTRRMRSVDDVIASGVAEYAVVDMDSTLANSPPIIESDLKVSIEEDNMFAYTIHATDPDGDSLIFLLDQTAPPPRGNVTLKVDGELWYTPCASCYGEDSIHFTVREKRTDFVAQPLSVDGTLVVVVGAANHAPILHMLKQGRNILPPSSAVTVVVEENRDMLFIIAAHDVDFTDSLSVAFNPPQHGHLTMHGQAKDVDLIHQDCAESWQTRRHLWDKLVEDITGSTSIQRVSLPNLCDTNFVDRQLAWVVAVFQYVPFRDYFGEDTIMVTVTDEISRDLLTIDVKVLRTGCVNVTDPDCVLTNSSAVAVDGEWGTWTTWSYCSESCGRGEQTRRRQCDKPLPNNGGRYCVGSSQQTLPCNCKSDFDADAACEMMTAGDRPGYFEDRCDCSRYYVCQRLRVGWKAVHLSCPPCLKWSQASFTCGVVVKGCKIGDITTTTGLRHTFFNYINAYPATLPSSSAITCIDFESGWHGMLATKGIYFRAKNVKIKSRTKFGHSAKFNGVSSRLEVPRFASSYSIFYEFSVSFWYKRVDTKTVVQGLVNNGDCDVLPSILITDNTGTIGVTFVTTGSQPIRHNGIPAPVNKWHHVALSYNGSRLVVYVDNVERVLGTTTGAIVEKQCPLVIGFTKISGYLRGYMDKICLYDRGLTKEEVDKLYHTK

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF17963	Big_9	Bacterial Ig domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16897	OS10G0105400 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008061	Molecular Function	chitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG11666.1 global RNA-seq network