Gene detail

Detailed information of RPACG11462.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG11462.1	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	tig00003243	354466	375913	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG11462.1

ATGGCGGCTCCCAATCAGGGAAAAGATTCTACCCCACCCCCTTTGTTGTTAATGCCAGCATCGGAAGGGTTGACTTTAAATCTTGCGCAAGGAACGAGCCTCCTGCTTCCAGTACCGCAAACAGAGCCGGCATTGATATTTCCAGAAGATGGGGAAGCTGACAGTTTTATTGGTCAAGGACCAAACATGGAAGAACAAACTCCGTTCACTTGTTTCCAACAACAACCACCCAATGGCGCCACTGAAGCTCCATTTACACACATGAGTACATCGGGTCCCAGCATGCCCGGAGGCAGCCAGATGCCACCCCATATGATGCCACCCCAAATGGGCAGCACCCCCAAACAAGGCACAACACCACATGACTTTCATCGACTTCCCGGGCCGCAGCGATATGCCCAGCCACCTCAAGGTACCTATGCAAGCATGCCTGGTCGGTCAGTGCCACCAGCGCCCCCTGTTGGTACACCAGTGGTACCACCAACAGCGGTTGTAGCCCCGTCGCAGGCGGACGTGTCAGCTGGACCAGTAGCTTCCATTACTCCAGGAATGTTCAGTGGAACAAACGCAGTACCGCCACCTGGCGGGGTGGTTCCGCTCAGCTACACACCAGTCACGCATCACTGGTTCTATGCACAGTTCATTGAGCTGCGACAGTGTTGGAAGCCGTTCTCAGTGGCAGACTCCATTCGACTCGAGGATGCATTTCGAGCAGGGCCTGCTCAGAATATTGTGGTCAGTACTGATGGTGGACGCTACGATGTTGACATCCAACGGAGAATCAAATCCGCTGTGTATTGGGCTGAGCCAGGGGTCAAAGTTCGGCGAGCATCTTGGTTTTACCGGCCCGAGACCGATCCCAGATTTTTGCCATATGACGAAGAATTTTCAGACAAGCTGGAGGAAGAGTACAAAAACGCACTTATGACAAACACGTGGCACCGCAGACTGGAGTTCACAGGAGGAGAGACAATCGTCATGCACAACCCCTGCGTTATCCTTCACTTTCTCCCCTCTTCCCAGCCAGATGAATGGGGAACAGCTCAGGGTGAGCAAGCGCGGCCCCGGGTCGTCAAGAGAGGTATTGAAGAATTTGACAATATTCCTACAGGAGAGGCAAGTAAAATAGATCACCTCGTGTTTGTTGTCCATGGAGTGGGATCAACCTGTGACCTCAGATTTAGGAACCTTATCGAATGTGTGGATGACTTCCGAGGGATCTCCTACCAGATGCTGCAGTCTCACTTCAAACGATACCTGGATGAAGACATGATTGGCCGCGTTGAGTTCTTGCCAGTGCGATGGCACGCTGCACTCCACGGGGATGCCACAGGCATTGACAATAAACTGAAGGCGATCACTCTACCAAGCATTGGCAAGTTGCGTAACTTCACAAACCACACACTGCTCGACGTTCTGTTCTACAGCAGTCCAACATACGCACAGCAAATTGCGGACACTGTAGTGGATGAAATGAACCGACTCTATGCACTCTTCATGACGAGGAATTCTGGTTACCATGGCAACGTGTCCGTTGTTGGACACAGTTTGGGTTCCCTCATTCTTTTTGACCTGCTTGTCCACCAGAGGGATCCGGCATCAAAGGCGGACGACTTAACCAATGACGCAAGTGTCGTCAACAACAACAGTTGTCATAGCGATGTTGCCTCACCAACAGGAAATGACTCTGTCCTGGAGACAATGCCTTCCGATGGAGCGATAGGGAGGGTAGAGGATGTGATGAGTAAGTCATCAGCGGAGGAGGTGGAGGAATTGTCTGTGATCCTGGAGAGGCTGGGTCTCGGAGACTACGGGGAAACCTTCAAGAAGGAGCAGATAGACACAGAGGCCCTGACGATGTGCGAAGAGGCAGACTTGAAGGAGATGGGTATCCCCATGGGACCACGCAAGAAACTCCTCGGCTTCCTACGGGAACTGAAAGAAAAACAGATGCGGAGTCAGACGGAGCAGATGGAGACGATGATGGAGCAGGAGCGGAGGATGGTGCAGGAGAGGAAGAGAGACGCAGAGGAGCAGAGTAATCAGGCAGCCTCCGCAGCCAGACAGGTCATGACCCGTGACCCACTTCTGCAGTCAGCGTCAAGTACATCAGTTGACTACATCATCGGGGCAGCTGGCACGGGGGGACCTCTGGTCCGCTACCACCAGCTCGACTTTTGCCCCCTGCATCTATTTACCCTCGGCTCCCCAATCAGCATGTTCCTGACGGTGCGGGGGGTGGATACCCTCGGGGAGAATTTCGCCCTTCCCTCCTGCCAGGGAATCTTCAACATATTCCACCCGTTTGATCCAGTGGCTTACAGGATCGAACCAATGGTCACTCCCAGCTACCCACCCAAGCCTGTGCTTATCCCACATCACAAGGGGCGCAAACGACTTCACCTTGAGTTGCGCGAGAGCCTGTCCAGAGTTGGCTCTGACCTCAAGCAGCGTATCATGGATTCTGTGCGCTCCACTTGGAAGACAATCAACGAGTTCGCCCTCGCTCACAAGACCACTCCGCAGGAGCTCGTCGACAAACAGGTCAATGATGTCCTTCGTCAGATGACCACTGCTGAGCAGGAGAGACAGGACGAGAGCGCTTCTTCAGCGTCCAGTGTGATGGACGAGGAGGAGATTCCCATCGGCAGTCTCAACCAGGGCGGCCGCAGGATTGACTACGTCCTGCAGGAGGCACCGATCGAGAGCTTCAACGACTACTTGTTCGCGCTTGGCAGTCACATGTGCTACTGGGAGTCGGAAGACACGCTGTTGTTGATCCTGAAGGAAGTGTACGGCAACATGGGCATCACACCCATCAAACCAGGGCAACTGAACCCCCCGAGTGCTGTAGGGCAACAATACAACACCCCGTCACCTCCTACTCGCCCTCCCGCACAAAACCCATCCATGTATTCGCCATCTGCATATTCCACCCCATCACCGGGAGAAGTTGCTGCTCCTGTAGGGGGTTATGGAACACCCCCTAAGGTGGCGCAATCCCAGATGCCACGACCGGTGAATGTGGGTCCACCCCCACGAAGTGGATTCGTGAAGACCCCGCATAAATAA

Transcript

RPACG11462.1

CGTAAACACTACCACGCAAGGATGGCGGCTCCCAATCAGGGAAAAGATTCTACCCCACCCCCTTTGTTGTTAATGCCAGCATCGGAAGGGTTGACTTTAAATCTTGCGCAAGGAACGAGCCTCCTGCTTCCAGTACCGCAAACAGAGCCGGCATTGATATTTCCAGAAGATGGGGAAGCTGACAGTTTTATTGGTCAAGGACCAAACATGGAAGAACAAACTCCGTTCACTTGTTTCCAACAACAACCACCCAATGGCGCCACTGAAGCTCCATTTACACACATGAGTACATCGGGTCCCAGCATGCCCGGAGGCAGCCAGATGCCACCCCATATGATGCCACCCCAAATGGGCAGCACCCCCAAACAAGGCACAACACCACATGACTTTCATCGACTTCCCGGGCCGCAGCGATATGCCCAGCCACCTCAAGGTACCTATGCAAGCATGCCTGGTCGGTCAGTGCCACCAGCGCCCCCTGTTGGTACACCAGTGGTACCACCAACAGCGGTTGTAGCCCCGTCGCAGGCGGACGTGTCAGCTGGACCAGTAGCTTCCATTACTCCAGGAATGTTCAGTGGAACAAACGCAGTACCGCCACCTGGCGGGGTGGTTCCGCTCAGCTACACACCAGTCACGCATCACTGGTTCTATGCACAGTTCATTGAGCTGCGACAGTGTTGGAAGCCGTTCTCAGTGGCAGACTCCATTCGACTCGAGGATGCATTTCGAGCAGGGCCTGCTCAGAATATTGTGGTCAGTACTGATGGTGGACGCTACGATGTTGACATCCAACGGAGAATCAAATCCGCTGTGTATTGGGCTGAGCCAGGGGTCAAAGTTCGGCGAGCATCTTGGTTTTACCGGCCCGAGACCGATCCCAGATTTTTGCCATATGACGAAGAATTTTCAGACAAGCTGGAGGAAGAGTACAAAAACGCACTTATGACAAACACGTGGCACCGCAGACTGGAGTTCACAGGAGGAGAGACAATCGTCATGCACAACCCCTGCGTTATCCTTCACTTTCTCCCCTCTTCCCAGCCAGATGAATGGGGAACAGCTCAGGGTGAGCAAGCGCGGCCCCGGGTCGTCAAGAGAGGTATTGAAGAATTTGACAATATTCCTACAGGAGAGGCAAGTAAAATAGATCACCTCGTGTTTGTTGTCCATGGAGTGGGATCAACCTGTGACCTCAGATTTAGGAACCTTATCGAATGTGTGGATGACTTCCGAGGGATCTCCTACCAGATGCTGCAGTCTCACTTCAAACGATACCTGGATGAAGACATGATTGGCCGCGTTGAGTTCTTGCCAGTGCGATGGCACGCTGCACTCCACGGGGATGCCACAGGCATTGACAATAAACTGAAGGCGATCACTCTACCAAGCATTGGCAAGTTGCGTAACTTCACAAACCACACACTGCTCGACGTTCTGTTCTACAGCAGTCCAACATACGCACAGCAAATTGCGGACACTGTAGTGGATGAAATGAACCGACTCTATGCACTCTTCATGACGAGGAATTCTGGTTACCATGGCAACGTGTCCGTTGTTGGACACAGTTTGGGTTCCCTCATTCTTTTTGACCTGCTTGTCCACCAGAGGGATCCGGCATCAAAGGCGGACGACTTAACCAATGACGCAAGTGTCGTCAACAACAACAGTTGTCATAGCGATGTTGCCTCACCAACAGGAAATGACTCTGTCCTGGAGACAATGCCTTCCGATGGAGCGATAGGGAGGGTAGAGGATGTGATGAGTAAGTCATCAGCGGAGGAGGTGGAGGAATTGTCTGTGATCCTGGAGAGGCTGGGTCTCGGAGACTACGGGGAAACCTTCAAGAAGGAGCAGATAGACACAGAGGCCCTGACGATGTGCGAAGAGGCAGACTTGAAGGAGATGGGTATCCCCATGGGACCACGCAAGAAACTCCTCGGCTTCCTACGGGAACTGAAAGAAAAACAGATGCGGAGTCAGACGGAGCAGATGGAGACGATGATGGAGCAGGAGCGGAGGATGGTGCAGGAGAGGAAGAGAGACGCAGAGGAGCAGAGTAATCAGGCAGCCTCCGCAGCCAGACAGGTCATGACCCGTGACCCACTTCTGCAGTCAGCGTCAAGTACATCAGTTGACTACATCATCGGGGCAGCTGGCACGGGGGGACCTCTGGTCCGCTACCACCAGCTCGACTTTTGCCCCCTGCATCTATTTACCCTCGGCTCCCCAATCAGCATGTTCCTGACGGTGCGGGGGGTGGATACCCTCGGGGAGAATTTCGCCCTTCCCTCCTGCCAGGGAATCTTCAACATATTCCACCCGTTTGATCCAGTGGCTTACAGGATCGAACCAATGGTCACTCCCAGCTACCCACCCAAGCCTGTGCTTATCCCACATCACAAGGGGCGCAAACGACTTCACCTTGAGTTGCGCGAGAGCCTGTCCAGAGTTGGCTCTGACCTCAAGCAGCGTATCATGGATTCTGTGCGCTCCACTTGGAAGACAATCAACGAGTTCGCCCTCGCTCACAAGACCACTCCGCAGGAGCTCGTCGACAAACAGGTCAATGATGTCCTTCGTCAGATGACCACTGCTGAGCAGGAGAGACAGGACGAGAGCGCTTCTTCAGCGTCCAGTGTGATGGACGAGGAGGAGATTCCCATCGGCAGTCTCAACCAGGGCGGCCGCAGGATTGACTACGTCCTGCAGGAGGCACCGATCGAGAGCTTCAACGACTACTTGTTCGCGCTTGGCAGTCACATGTGCTACTGGGAGTCGGAAGACACGCTGTTGTTGATCCTGAAGGAAGTGTACGGCAACATGGGCATCACACCCATCAAACCAGGGCAACTGAACCCCCCGAGTGCTGTAGGGCAACAATACAACACCCCGTCACCTCCTACTCGCCCTCCCGCACAAAACCCATCCATGTATTCGCCATCTGCATATTCCACCCCATCACCGGGAGAAGTTGCTGCTCCTGTAGGGGGTTATGGAACACCCCCTAAGGTGGCGCAATCCCAGATGCCACGACCGGTGAATGTGGGTCCACCCCCACGAAGTGGATTCGTGAAGACCCCGCATAAATAATCAAATTCGTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG11462.1 global RNA-seq network