Gene detail

Detailed information of RPACG11459.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG11459.1	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	tig00003243	218925	236359	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG11459.1

ATGAAGGGTGTTTTGATATTTAATCATATGGACGATATTGCGTTCATGAGCACAGACGACGAATACAATAATTACCTGAAGAAGCGCGCCCGAGATGAAGGGTTTATTAAAGAGTCAGACCTGGACTTACCACTGGACCTGAATGTCATCCTACAGATGTTTTCTCCTCTTCTGGCCTCACAGAGATTCACAAGAAACCAACTCAACAACTCGTACCATTCTGTCAAATGTCAGACAGGATTCTTGTTTTGCTTTCAGCAGTTTGCAGATGAGTGTTACATCGCTATCAACGGCGATGGCACAGAAACTGAACAATTTCTACATCACAAGTTGAGGGTTCTTCACAGCATCTTGGGATTCCTTTTGGGCCCTGTGTCTCAAGCGATACGACCAGACAAGATTCAGATGAGAGAAGACAGATGGGGCTTTGTGTCATTGTTACTAACAACTTGGTGTGATCTCTATAGAACGGAGCAGTGTTTTCTTGTTGAGGCCATAGAGAGGCTGCAGGTGAATGACGAATTGAAGTCAAAGTGTGTGAAACTTCTTGAGTCTGCGCTGACATCAGCCAGAGCAGCAGGCCTCAAATACACAGTCCACTCTCTGCTCCTGGTCAACAACAAATTATTGGCTCTCTACTCCAGTAGGCACTCAGCTCCCCTCGTCCCCGTCGATCTCCTCAAGCTGCTGCTCCTCATCAACACGATCTTCCCACATCCCTGTTGTCATGACGACGATCTAGTGGGGTCGTTGTCTTCGGATGTGGCCCAGGGAGAGTCGAGGGAAAGACAGTTATTCAGTACGTCAACTCCAGCTGATGGTCAACCAGCCTCTCGGTCATCATCAACAGCATCATCACCACAGGTGACAGATGACTCACTAGAAGCCAAACGCCCCCCACAACTATGTGAACCCACAGCTACACCTGCACCTTGCGGTCCACATAGGAGACTCTTCCCTGAACAGTCACCATCAGTAGCCCACTCCAGCGCTCACAGTTTGCTACAGAGTATCGACAGTGCTTCCAACTTTCTCCAGCAGACGGCATCCTTCTACCGCAGGCTTCCCGTCTTTCTCCAGTCCGACGGATGTGCATTTAATCCCCACATCTGCCACTGTGTGGAGCTAATGCCTGGCATTTATCTCATCATACTCAATGAGATCAGTCGAGCATCACACGCTGGTGTCATCTGTAAAGCGTTGGATGCCATCAATAGAGTCCTACACCGGCATCTGGATGTGGCGGACACTAACTGCTCTCCAGGAGGTAGCACCAGTGCCAAGGAAAAGCTCGATGCCAGCATCCAAAGACTGCAAGAAGTGTCGAAAATCTTCAAAGGGGCAAGGCAAGTGGAGACGGTGATGTCAGACATCTGTAGCAAGTGGAAACGTGCCGAAAAATGCGACTTTGACACGATCGTTTCAAGTGACAGCCCAGTGAACCCCAGGCTAGAGAGTCTCCTGGGACGTTTGCGTGATCGACTGGAGGAGCTCTTCAAACTCCTTTATCTGTTGCCTCGGCGACAGGCTCCAGAGGTGCAGGTGAACATCACGCAAGGCATTGAGTTAGTGGGTGACATGCTGAGGCGCCACCTGGTGGACTACAGCAACTACTTGATGGTTAAATCGTTTCACAACATCACCATGACCGGCTATCAGCAGGACTTCCATGGCTTGGTTCACTTCATCTATGTCAATCGACTGACCGGACAATTGACAACACCATCCATGAACAAGGCTGGGCCGACAACAGACACGGAGGATAGCCTTCAGTTGTTGTTGTGGCAAAAGATGGAATGGCTGCGAGAGAGACTGACCGATGGCTACACGTCCGCCCTCGTCCGAGATGGAAGCTACGTATATTCCTACTTCGTCTGGTTTGAGAACAAACTGGGTCACCCAGTAAAATTTCAGCAGCCATTCAAGAGGTCAAAGAGAAGGGTCGAACCAGGGGCACTCAGCGAGGACTTCTACAGAGAGATGGTCCTGCAATGTTTTCCCGAGATGCCTTCAAAGTCCATCAGCTGCTTCGAGCTCTTCTGTGTCTCCAATGGTCGCATGACCACTCCACAAATACTGCGACAGGACCGTAAGCTGGTGGCCACCTTGCAGCAGATGACACGAGAAGCGTCGGGTCCCATTAACTTGCTTTGA

Transcript

RPACG11459.1

CAATGTTTATGTGATGTTGACATAATGCGGCATATGTAACACCGGGGAGACATTGCTGATTATTTATTCACAATGAAGGGTGTTTTGATATTTAATCATATGGACGATATTGCGTTCATGAGCACAGACGACGAATACAATAATTACCTGAAGAAGCGCGCCCGAGATGAAGGGTTTATTAAAGAGTCAGACCTGGACTTACCACTGGACCTGAATGTCATCCTACAGATGTTTTCTCCTCTTCTGGCCTCACAGAGATTCACAAGAAACCAACTCAACAACTCGTACCATTCTGTCAAATGTCAGACAGGATTCTTGTTTTGCTTTCAGCAGTTTGCAGATGAGTGTTACATCGCTATCAACGGCGATGGCACAGAAACTGAACAATTTCTACATCACAAGTTGAGGGTTCTTCACAGCATCTTGGGATTCCTTTTGGGCCCTGTGTCTCAAGCGATACGACCAGACAAGATTCAGATGAGAGAAGACAGATGGGGCTTTGTGTCATTGTTACTAACAACTTGGTGTGATCTCTATAGAACGGAGCAGTGTTTTCTTGTTGAGGCCATAGAGAGGCTGCAGGTGAATGACGAATTGAAGTCAAAGTGTGTGAAACTTCTTGAGTCTGCGCTGACATCAGCCAGAGCAGCAGGCCTCAAATACACAGTCCACTCTCTGCTCCTGGTCAACAACAAATTATTGGCTCTCTACTCCAGTAGGCACTCAGCTCCCCTCGTCCCCGTCGATCTCCTCAAGCTGCTGCTCCTCATCAACACGATCTTCCCACATCCCTGTTGTCATGACGACGATCTAGTGGGGTCGTTGTCTTCGGATGTGGCCCAGGGAGAGTCGAGGGAAAGACAGTTATTCAGTACGTCAACTCCAGCTGATGGTCAACCAGCCTCTCGGTCATCATCAACAGCATCATCACCACAGGTGACAGATGACTCACTAGAAGCCAAACGCCCCCCACAACTATGTGAACCCACAGCTACACCTGCACCTTGCGGTCCACATAGGAGACTCTTCCCTGAACAGTCACCATCAGTAGCCCACTCCAGCGCTCACAGTTTGCTACAGAGTATCGACAGTGCTTCCAACTTTCTCCAGCAGACGGCATCCTTCTACCGCAGGCTTCCCGTCTTTCTCCAGTCCGACGGATGTGCATTTAATCCCCACATCTGCCACTGTGTGGAGCTAATGCCTGGCATTTATCTCATCATACTCAATGAGATCAGTCGAGCATCACACGCTGGTGTCATCTGTAAAGCGTTGGATGCCATCAATAGAGTCCTACACCGGCATCTGGATGTGGCGGACACTAACTGCTCTCCAGGAGGTAGCACCAGTGCCAAGGAAAAGCTCGATGCCAGCATCCAAAGACTGCAAGAAGTGTCGAAAATCTTCAAAGGGGCAAGGCAAGTGGAGACGGTGATGTCAGACATCTGTAGCAAGTGGAAACGTGCCGAAAAATGCGACTTTGACACGATCGTTTCAAGTGACAGCCCAGTGAACCCCAGGCTAGAGAGTCTCCTGGGACGTTTGCGTGATCGACTGGAGGAGCTCTTCAAACTCCTTTATCTGTTGCCTCGGCGACAGGCTCCAGAGGTGCAGGTGAACATCACGCAAGGCATTGAGTTAGTGGGTGACATGCTGAGGCGCCACCTGGTGGACTACAGCAACTACTTGATGGTTAAATCGTTTCACAACATCACCATGACCGGCTATCAGCAGGACTTCCATGGCTTGGTTCACTTCATCTATGTCAATCGACTGACCGGACAATTGACAACACCATCCATGAACAAGGCTGGGCCGACAACAGACACGGAGGATAGCCTTCAGTTGTTGTTGTGGCAAAAGATGGAATGGCTGCGAGAGAGACTGACCGATGGCTACACGTCCGCCCTCGTCCGAGATGGAAGCTACGTATATTCCTACTTCGTCTGGTTTGAGAACAAACTGGGTCACCCAGTAAAATTTCAGCAGCCATTCAAGAGGTCAAAGAGAAGGGTCGAACCAGGGGCACTCAGCGAGGACTTCTACAGAGAGATGGTCCTGCAATGTTTTCCCGAGATGCCTTCAAAGTCCATCAGCTGCTTCGAGCTCTTCTGTGTCTCCAATGGTCGCATGACCACTCCACAAATACTGCGACAGGACCGTAAGCTGGTGGCCACCTTGCAGCAGATGACACGAGAAGCGTCGGGTCCCATTAACTTGCTTTGAAGATGTGTCCATTTAAAATTTGTTCACCGACAAATATTTGTATCCATTTTGGTACTGAAACTTGTTCCGTTGTTGCATTTATAAACGGAAGTCAAACAGTGGATGCTCCCTATGGGAACATGTTGGAGCTCCCACGAACTTTTTCTTGCAACCATGGCAACGTAACAAAGTAGAGTTCAGTGACGTAATGTAACATCTCACCTCAGATTGCACATTTCAATCTCCCCACTACTTTTTTGAACCGTTTGAATTTCAGTTGCTTCATGTTACTCCAGTTCACTCAGTTATATAAATGAACACATGGTACAGACATGTGTTATATATGTATATATATATATGAATTTGTTGTAATTGTGGTAAGGCTGAATACTTCCCAGAAAACTTGTGATGAATAAACGGGTCTGCAAAGCATTGAAAGGTCATAAGGACAGGAAACTTACATACAAAAAATAACTACTTTTACAACTCAAAGTTGTCCTTACATGAAACATCCTTACAGAAATGGATAATAGAATGTTATTGTCTGTCCTTTACAGTTAATACATGGGTTCAAGAACATTATATAAGAAATATTGTGTGCCTCTGCATATCAGATCAGTCTACATAATTGTGATATTAGTGTACAGGAAATATTTATTCCAGTGCCATAATAATGACGTTAATTTGTTCATATGTATGAACATAGTGGACAGAATTATGTGAATCCTTACATTTGGCTTTTCAGCATTCTGCTAATTTCATGTTAGAATCATTAACAAATTTGATCAAAATTAATAACCGATACATGCAATTTTAAGAATCAATTGAATTAATGTTATTACCCGTGATTTTGTTGTAAACCACACACAGAAGCGGCACACATAATGTGCTAGTCATAATGAAAACTAGTTAGGTTTGCATTTAGTAACATGAATTTGAGATGGCACAAGTATGATTTCTCTTGATGATGCATGGGTCAAGACAGACAAGCAACAGACTATGTTCGGTAAAACCTGCATGTTTATTCCTTATTAAAAATAGATCTGTGACAGGCATGAACGAATGTATTTTAATAAAATGCAATATATATAATTATAGCACCTACATGAATCTGTACAATGTGATACGAATAAAACATCCCCACTCATTGCGATATGAAATGGCATCCTTGTCTGTAAAGGGAGAATGTTGTAAGCATTAAAAGAAAACATTCCTTTTAATAAGCATTTCATACTGTAATCGCTGCAAACACGTCTGCTTCTTTTGTCAGTTCAACGACCGTGACATTAGTGTAGATGGTAACTGTCTGACTGTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01624	MutS_I	MutS domain I	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF21410	MAP6	Microtubule-associated protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR007882	Family	Microtubule-associated protein 6	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0032301	Cellular Component	MutSalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG11459.1 global RNA-seq network