Gene detail

Detailed information of RPACG10997.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG10997.1	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	tig00003090	77431	136842	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG10997.1

GCAAATGTCAACATGGTGTGTGGAGGGATAAGGGGGTGGGCCGAGTATTTTGTCGTAATTTTCGTCCTCCTAGCAAGCACCAACCCAAGACAGCTCGGCCTAGCAGTCCACGTGAACGGTGGCGCCGATAGGAGCCGCCATAAACCCGCCGTCGATGTCACACCCTGGCGAACGTGGAACATACCAAATTTTGCCAACTACGACTTTCGTGATGACATCCGGCGCGAATCCGACCAAAGTCATCCTGTGGCCCACATGACAACATGGCTCAATGGCGGCGTTACGAACCAGCTCCCGCAGGACTCGAAGAAACCGCGACATATTGGTATTTGGAACATTAAAAAGAAGGCTAAGTCAAAACTTGAAGCTACTCTTTTCGACGACACTGACAATACACACTGGACTGAACAACAAGTTCCCCCAAAGTTCATCCTTGTGCTGAAACTGGACAATGAGCTTGGGTCGCTGACCAGAGGCCAACTGGTCAGGCTGAAGGACACGATGGCGGAACTACTGAGTATTCCTCGGGTCAACGTTGTTATTCTGCGGCCACGGCCAAACAGCCGTACACTGCAAATGTATTTCGTGCGGTCGGGAGACAACCCAGTGGGGCCACCTAGTGTTGACAGCCTGTTGCCAGCGAAGGATGTTGAAGCTGCTTTAGCGTCTCATAGCATCATGGATATGGTCCCTGGTCTTACAGTCCGCAGCGTCTACACACAATACAACCCGGAGCAGGAAGAAGTTGTCAGGTCTTACAGAATTCCAGTTTATGGGCCAAGTTATCTCACTTACACTTGTGGCATCATTGCCTTGTTGGTCGCTGGTCTACTTGTTTTCTTGATTTGGTGGGTTCTACAGAAGTACAGAATGATCGACTCGAAGAATGGGGGTAAACTGTCACCACTGTTCACCCCGCCGCCGGACGTTTCACAACAGATCTGTATGTATCCCTGCGCCAAGCCAGGCGTTAATGCCGTCACTGCCATACAGCCTGACCTGGTGGTCACCACAGGAAGCAAGGCTGCATGCATGTCGTGCGGCACGACCCCGATGCATTGTGGGTCACCGTCACAAAATAGTTCGTCGGCCAATGAGAGCAGCACCCCGTCATACAGCAGTGGGTCATCAGCGGGAACGCCAGTGATTGGAACCCCAATCCAAGGGTGCAGCACCCCTCTCCACACCCCTCTCCACACTCCCATCCACACACCCTTACATACGCCACCGATGAAGATCAAGGCCAGGGGGTTGCTGGAGAGACGTGGTTCAAATGCGTCTCTCACCATCGACCTAGGACACAGTGTTCACGATCGCACAGTCGGCAGTCCGCCCAAGGAAAGTTCGGCCGAAGAATATCTGCTGTCTGCCGGCAATCGTATGTCACGGAAACAGCTTCGTTCGTGTCTCAAAAACCCCACGGCACTCTACGAAGAATTCTGGGAGATTCCCATGAACCATCCGGATAGAATTGCAGTCACCGGTTCAGGTTTGAAGAACAGATACAGAAGTATCATCCCAAATGAGAACACACGAGTGAAGTTGCCAGTGGATGGAGAAGATGAATTGTGTGGCTACATCAATGCAAACTACATCAGGGGCTACGCGGGTGAGGAGAGGGCATACATTGCGACCCAGGGCCCAATGACCAATACGGTGAGAGACTTGTGGCTGATGGCCTGGCTGGAGAGGTCTCCAGTCATTGTGATGATCACCAAACTGAAGGAGAAGAACAAGACGAAATGCGAGGCGTACATCCCTGACCGGTGCGGTGTCTATGGGGATGTGACGGTCTACGTGCGCAGCGTGTCGGAGCAGGACGGATACGTGCTGCGGAGTCTCACCATCAAGTATCAAAATGAAGAGCACAGTCTGCTGCATGCGTGGTACATGGCTTGGCCAGACCACAAGGCCCCAGACACGGCGAGGCAACTCCTGAACCTCGTCAAAGACGTTGACAGACACCGCTATGATCCTGAGACTGGCCGACCCAAGGGACCAGTCATTGTACACTGCAGTGCGGGCATTGGGCGGAGTGGCTGCTTCATCGCGACTAGCATCGGCATGCAGCAGCTGAGAGAGGAGCACATGGTAGATGTGCTGGGAGTTGTGTGTGCCATGAGGATGGACAGGGGTGGGATGGTGCAAACAAATGAGCAATACAGATTCGTCCATCAGGCCCTCTGTCTGTACGAGAGAGAACTACCCGACTGTCCACCTGGTGGAGAGTGA

Transcript

RPACG10997.1

CGCAAATGTCAACATGGTGTGTGGAGGGATAAGGGGGTGGGCCGAGTATTTTGTCGTAATTTTCGTCCTCCTAGCAAGCACCAACCCAAGACAGCTCGGCCTAGCAGTCCACGTGAACGGTGGCGCCGATAGGAGCCGCCATAAACCCGCCGTCGATGTCACACCCTGGCGAACGTGGAACATACCAAATTTTGCCAACTACGACTTTCGTGATGACATCCGGCGCGAATCCGACCAAAGTCATCCTGTGGCCCACATGACAACATGGCTCAATGGCGGCGTTACGAACCAGCTCCCGCAGGACTCGAAGAAACCGCGACATATTGGTATTTGGAACATTAAAAAGAAGGCTAAGTCAAAACTTGAAGCTACTCTTTTCGACGACACTGACAATACACACTGGACTGAACAACAAGTTCCCCCAAAGTTCATCCTTGTGCTGAAACTGGACAATGAGCTTGGGTCGCTGACCAGAGGCCAACTGGTCAGGCTGAAGGACACGATGGCGGAACTACTGAGTATTCCTCGGGTCAACGTTGTTATTCTGCGGCCACGGCCAAACAGCCGTACACTGCAAATGTATTTCGTGCGGTCGGGAGACAACCCAGTGGGGCCACCTAGTGTTGACAGCCTGTTGCCAGCGAAGGATGTTGAAGCTGCTTTAGCGTCTCATAGCATCATGGATATGGTCCCTGGTCTTACAGTCCGCAGCGTCTACACACAATACAACCCGGAGCAGGAAGAAGTTGTCAGGTCTTACAGAATTCCAGTTTATGGGCCAAGTTATCTCACTTACACTTGTGGCATCATTGCCTTGTTGGTCGCTGGTCTACTTGTTTTCTTGATTTGGTGGGTTCTACAGAAGTACAGAATGATCGACTCGAAGAATGGGGGTAAACTGTCACCACTGTTCACCCCGCCGCCGGACGTTTCACAACAGATCTGTATGTATCCCTGCGCCAAGCCAGGCGTTAATGCCGTCACTGCCATACAGCCTGACCTGGTGGTCACCACAGGAAGCAAGGCTGCATGCATGTCGTGCGGCACGACCCCGATGCATTGTGGGTCACCGTCACAAAATAGTTCGTCGGCCAATGAGAGCAGCACCCCGTCATACAGCAGTGGGTCATCAGCGGGAACGCCAGTGATTGGAACCCCAATCCAAGGGTGCAGCACCCCTCTCCACACCCCTCTCCACACTCCCATCCACACACCCTTACATACGCCACCGATGAAGATCAAGGCCAGGGGGTTGCTGGAGAGACGTGGTTCAAATGCGTCTCTCACCATCGACCTAGGACACAGTGTTCACGATCGCACAGTCGGCAGTCCGCCCAAGGAAAGTTCGGCCGAAGAATATCTGCTGTCTGCCGGCAATCGTATGTCACGGAAACAGCTTCGTTCGTGTCTCAAAAACCCCACGGCACTCTACGAAGAATTCTGGGAGATTCCCATGAACCATCCGGATAGAATTGCAGTCACCGGTTCAGGTTTGAAGAACAGATACAGAAGTATCATCCCAAATGAGAACACACGAGTGAAGTTGCCAGTGGATGGAGAAGATGAATTGTGTGGCTACATCAATGCAAACTACATCAGGGGCTACGCGGGTGAGGAGAGGGCATACATTGCGACCCAGGGCCCAATGACCAATACGGTGAGAGACTTGTGGCTGATGGCCTGGCTGGAGAGGTCTCCAGTCATTGTGATGATCACCAAACTGAAGGAGAAGAACAAGACGAAATGCGAGGCGTACATCCCTGACCGGTGCGGTGTCTATGGGGATGTGACGGTCTACGTGCGCAGCGTGTCGGAGCAGGACGGATACGTGCTGCGGAGTCTCACCATCAAGTATCAAAATGAAGAGCACAGTCTGCTGCATGCGTGGTACATGGCTTGGCCAGACCACAAGGCCCCAGACACGGCGAGGCAACTCCTGAACCTCGTCAAAGACGTTGACAGACACCGCTATGATCCTGAGACTGGCCGACCCAAGGGACCAGTCATTGTACACTGCAGTGCGGGCATTGGGCGGAGTGGCTGCTTCATCGCGACTAGCATCGGCATGCAGCAGCTGAGAGAGGAGCACATGGTAGATGTGCTGGGAGTTGTGTGTGCCATGAGGATGGACAGGGGTGGGATGGTGCAAACAAATGAGCAATACAGATTCGTCCATCAGGCCCTCTGTCTGTACGAGAGAGAACTACCCGACTGTCCACCTGGTGGAGAGTGATGAAAACACGAGCTGCAGCCCATGCATTGCGTTCATAACCTGGGCACTTGCGCCGATTTCATATTCAGAGACCTGGAGACATCCGATGGGAAACTATTTCACGCGACACAGAGAATGGAGATGTGGGAGAGGAAACTATTTCATGTGACACTGAGACTGGTGACGTGTGAGGGGATGCTATTTCACGTGACACATACGGCTGGTGATGTGAATGTGTTCCTCCATGTCAGACTCTTCAAGAATTTGTAGCAGGAATGTGCTTGTGATTGTTGATCTGACTTTTCGTTGTAAAACCCTTTTATTTCGTTTCGTTATTGTGTAAATTTTTGCACTGCATTTGTATGTGGGAGGGGGTTTGTACAGATTTTCAATTACTTCGTTAATTGCTGTTATTTTAGCCATTTTCATACTAGGAGGGATGTTTGAAACCGAGTTTGCCTGCTGTTTGTTTTGATGGATACAACTTTGTTAGTTGCGAATGTGACGGTGTTTACAAAGAATGAGCAATGACCTTGTTTAATTTGCCTGACTCAGATGTTGTTGGCTGTTGTGGGTTATCAAAAATTAATACCTCTGATCTTTAAATGGCGACTTGATGGCGTGAAGGACAACGATTTATTTGCCAGCAGTAAGGTGATCTCTACGTGTTGTTAATCTGGCATAGTGTAATTATCAATTGCAAAATAGTCTATTGTTTTTTACCTATTAAGTGGTGAAAACCACAGTTTTAATACACATTCAGTGAATGTTTGGTCTTGCCTAGTCGAATTACTACAGTAATACGTTTTGTGTTGTGATGTTCATCTGCACAGTCGTCCTGTCAGTCTACTGATGACATCGCTTGACGATATTCGCGTACGTAGTATTGTGCATTTTGCACACATTAGAGATGTATTTTGCGAGTTCATCACGACATATAATGTACAGTTTCAAAGTATTGCTGCCTTTGTCGCTATTATCTGCTTTGTGTTCAATACAACATTTTATATGATGTACTGACTCAGTCAGCAACTTAATAGTTCAGACTGGATTGTCATAATCTAACAAGCTTAGTCATTTCTACAGCACACACTCAAGTCTATTTATATTAGTGGCTGTGTAACTTCTGTGTAAAAGAATAATTAAGTAGGGCCGAAAGATTAGTACGGTCAAGTAATGAAACAGGACAAATGGTGGTTGTCGTAAATCATATCTAGTCAAGAGTTCTTTATATAATATGTATGTATGTATATATATATGTATATATATATATATACATATATATATATATATACATATATATATATACTGTCCTACTGAGTTGACTCCATTTAGGGCTGGATTATAATTGCACTGAAATGATATATTGTTGTGAAAGATGTGAAATGCCGTGAGTAGATTATTAAGAACATTTCCTCGTGACACTTCTTTGTCGTGTCATGCAGGAGTTCCGTGCAACACTTTGTTTGTTGTAGTACTTACGAGAGTAATTCTTTGTGACACTTTGCTTACTTTGTCTTGCTGGGACACGTCCTTGTTGCGTCTTTGGAGAGCAGTTCCTTGTGACACTTGTTGTGTCTTAAATTTAGAGAGCAGTTCTTTGCGACACTTCAGTCGACATATCTGACACAGTTCACTGCACATTTCTACCTGCTATTACATCATGAGTATCCAGTACCCATTTTTTTACAATGAATTAAACTGTATTATCTGCTGCTTTACGATGAGTAGTCGGTGTTCGACTGGTTCGACTGGTTGTGTTGTGTCATTGCTATGTCACATGTCACCGTGTTGTTTACAAAGTGGTCGGAATGACGTGCATAATAATCATTCTCCATTAATCCGCCATGTCCTGTAATATGTAAATATCTTAGATTTGTCCTACGTGGAAGAGCTCTACCATTTGATGACGCTGACAAAATGAGCCATTCGTCGTGCAGGTTGCAGTTAGGTCTTTCTTGCAACTGTGGGCCGGCCTTGTGTGCTGGGAACCAGCAAATGTATACTGCATTGATTATTTGCGTGCATGCGACTGTACTTAGATTTTTTACTGTTGTGATTTTGCATTCAAATTTCTCTATTACCGGATACTGGCATGAATTATGAAGTGACTCGTGGTTGGTAGACAGTGTTTTTCTTACAATGCTTCAAGTTATGTGATTCTAAACATTAACGTCGGAACCTATAATCCTGCAGCTGTATCTTAGTGTTTTTGTACAAGTGTAGCAGTTTCGTTTCACTGACATTAAGCGGAACATATCCATAAATTGTATCTACAAATTGTTGGTAGAAATTGTTATGATTGCCTTATATTTGTAAATGATACTAATCAGAGACTAGTGTTGTGCATTGTCTGTCTCAGCATTGCCGTCACCAACAGCTACTTACACTCTGGCGAGCATGCATGTGTGTGTAATGGGCAGACAACTGAATAAATAAATGACGCTTGGCCCCGTGGGTCTTATCATCCAGTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14929	TAF1_subA	TAF RNA Polymerase I subunit A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039495	Family	TATA box-binding protein-associated factor RNA polymerase I subunit A	Interproscan
IPR052669	Family	SL1/TIF-IB Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32122	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000120	Cellular Component	RNA polymerase I transcription regulator complex	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG10997.1 global RNA-seq network