Gene detail

Detailed information of RPACG10105.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG10105.1	TRNA (URACIL-5-)-METHYLTRANSFERASE	tig00002654	760022	774016	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG10105.1

AAACGCCATATTGAAAAATACGGACTGCATAAATCCATATCTGACTTATTTACAGTGATCGAACAAGCTAAGCCATGCCTCCCAAGAAGAAGGGAAAGAAGGGAAAGGGAAAAGGGAAGAAGTCGGCCAAGTCAAAGACACCGACTGTCATCGATGGCGTCTCGACGGAAGAAATGACAAAAGAGCAGCTGGAGGAACACATAGTTCGACTGAGGGAGGAGCTAGATCGGGAGAGGGAGGAGCGCAACTATTTCCAGCTGGAGCGTGATAAGGTGAACACATTCTGGGAGATCACGAAGCGACAGTTCGAGGAGAAGAAGGCAGAGCTGCGTAACAAGGACCGAGAGATGGAGGACGCTGAGGAGAAACATCAGATAGAGATCAAGGTGTACAAACAGAAAGTGAAACATTTGCTCTATGAGCATCAGAACAACATCTCAGAGCTGAAGGCCGAGAGTACGGTGGCACTGAAGTTGGCACAGGATGATCACCGCGCCGATGAACTCGAGCTACGGCGAGACAAACGCTCCCTCAAAGTTGAACTGAAAGAGCAGCAATTGTCACATGAAGACGTCATCAAAGATCTCAAGAAGGAACAAGACAAGAAGCTGACTGAACAAAGAAACGACTTCGTACGACAAGCTCACGAGATTGAGCACAAGTATGAGAAAAAGATGAGGGCTCTACGAGACGAACTTGATCTTCGACGCAAAACAGAGATCCACGAGATCGAGGAGAGGAAGAATGGTCAGATTAACACGCTGATGAAAAACCACGAGAAAGCATTCAGTGACATCAAGAACTACTACAATGATATCACGCTGAACAACTTGGCTCTCATCAATACACTGAAGGAACAAGTGGAAGAGATGAAGAAGAAGGAAGACCGTCTGGAGAAGCAGATGGCGGAGGTGATGACAGAGAACAAACGTTTGGTGGAGCCACTGCAGAAAGCCAGGGATGAAGTGGACGAACTGCGGAGACAACTGTCCAACTACGAGAAGGACAAACAGGCTCTGGCGAGTGCGAAGGCCCGATTACGTGTTCTTGGCGCCGACCACAAGGCTTTGCAGTGGGAGCACGAAGTATTGGAACAGAGGTTTGAAAAGGTGCAAGAAGAGAGGGATGAACTGTACAAGAAGTTTGTGAAGGCCATCCATGAGGTGCAACAGAAGAGCAACTTCAAGAACTTGTTGCTGGAGAAGAAGCTCAGTGCATTGGCCGACACGCTAGAGAAGAAGGAGGCTCAACTCAACGAAGTCCTCTCAGCGTCCAACCTCGATCCGACGGCTCTCACGGTGGTCACAAGGAAACTCGAGGATGTACTCGACTCAAAGAACAGCGCTATCAAGGACTTGCAGTATGAATTGGCCCGCGTGTGCAAGGCTCACAATGATCTACTGAGGACGTACGAGGCCAAGCTGACGCAATTTGGCGTACCGACGGAGGAGCTTGGCTTCAAGCCACTCGAGAGTACCGTGGGAGGCCAACAGCTCGGCCAGGGACCTGCCGGACTCGTCTCTGCTCCCACATAATACATCACAAATGATGGGACATAGAAACATGGGGGTAGTACATTTCAGATAACGGATTTTATCACGCTACGTTTGGTTGGGGAACGAAGACCTGATTGCGTTGTGGAAATAATGATAGGCGACGACTGGTTTTAGTGGTTGTCTTTAGACAGTGTGGCCGAATCTCACCATTGGTCTCTCGTTAAGTTACTTGTGGCATTGCATTGCAGAGCCATGGCAGCATTCCTCTCCGTGTTTCATGTAAGTGAATGTGTTTGTGTATGTACATAAAAACAATTTAAAGTGATACTTGTACGTATGAGTGAAATAGACATACGTAGTCAAGTGTCATCGATAAGATCGCTGCCTATTCCTTGTATTCAGTTCGTAGTCCACATTGGAAGTGTGTCGGTAAACCCGTGCGTTATCGCAGCTGAAGTGCACGAACACAAACATAATAAGAATCCACAAAATGAACACGTGAAGTTGTTGATTTGAGACATTTATGAAAGTTTCGTCCATGTTATAATGTTGTTGATACGTTGAACACTCGATGATGATGGTGCCGAAAAAATCATCGTGATTAGTAACTAATTCATCCGGCGTTTGCGCCCGTTTGCACCCGTTTGCTTTCGTAAACCCATTAGCAATCCGCCGGCGTTGTTCGAGACAAAATCCAGATTGTAACGTTTCTCGTCCCCCGACAATTCGCTAGATTTATCTGCAAATGAAGCGTGATTGGTTGCGACGGGAACACGGCTGTGTATGGTTCTTGGTAGGATTCGTGTTCCACCTTTGTCAGTTCGTCCATGCAGCTTGCGGGTTCACTGTCCTTAATGTCTTTTGTGCGTGCAAGTCCCGTAAAGCGACCGCCATTATCGGCAAGGCCGTGCTATCAAGATGAACGCTTTTGTGCACTGGCGCATTTTGTACAGTGTGTATATTTATAACTAGTGTTTACAAATTGAGACTGACGTGATGTCATTTGGAATGCATTAGGGAGGAGAGCTTACATGAGTAATATAATACTCACGTAAACAGTCGTTTAATCGGGTTACATAAACAGCGTGTATGTGCTATGAGTAAAAAAATATTGCACTTGGCCTAAATTACGTTTGACTGTTATCCTCTAAACATTGAAAGCATCTCCATCCAGTGAGATACGTCATTGAATATGTGGATGTAATACATTGTGATGTTTTATATTTGTTATGTAGAAATGTGTACTTGTGTAAAAGCGTTATCTTGTGCTGGACTCGATCAGATAGGGTACCATAAAGTATTTAAATAAAAAATGCCAAGCGACATGTGTTGTTAATGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR010280	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR030390	Active_site	RNA methyltransferase TrmA, active site	Interproscan
IPR034262	Domain	TRMT2A, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR045850	Family	tRNA (uracil(54)-C(5))-methyltransferase, metazoa type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45904	TRNA (URACIL-5-)-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG10105.1 global RNA-seq network