Gene detail

Detailed information of RPACG08814.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG08814.1	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	tig00002323	371799	375699	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG08814.1

ATGTGTACCAGAACCGAATGGTCAGCGTGTTGCGTGGCAGCACTGCTGCACTTTACCATCACTGTACTACTGCTCTGTGATGCTGGCAGTGCCTACGAAAAGTCAAGATGTGTAACCACACCCTCTGTGGTTGGACAACTCAAACGTAGCTGGCTAAAGAGGGTGGTGTCTCTCACCCCATATTTACCAGAGACAGACCTCCACATGTGTAGAGGAGATTTAATGTACTCATCTGTTGACAAACTCAGTGTGTCTGGCCGTGTGTTTGATGACAACTGTGAGCCACTGACAAACATCCTCATCAAGATAATACAGCGGGACTCACAAGGCCACTACACTGTGTTGAGTCGATGTGAGGGGGCTGTCATCACTGATGACCGTGGCTTCTATACCTTCACAACAGTTGTTCCTGGCAGTCCATTCCTGCAGCAGTCACCCTCCATCGAGTTTGTATTGTCACGGCGAGATGACTCTGGTAAGAATGCACTTATCACGAGCGTGTTTGTCAGGAATCCCCAGGTGGACAGTGCTTCGGCTAGTGTTGACACCAAACCATGCCTTGTCATGCAGCCTTTGTTTGTTGACAATGCCAAGACATTGCACTACTTTGCAGTGTTTGATTTTGTCCTACCAACCCATGCCAATAATATGGATGAACTGATGTTATCCTCTCATTCCAAAAGTGTGGAAAAGCGGGCATGGTCAAAAGCTAACAGGGCATGGTTGAAAAGGAAGTGGGGAACCTCAGCGAACTGGCTGCCCAAAAATGACTGGGACAGCAACACCATATCGTGGCTGAAGCGAACTCAGCCAATGTCGAAGCCCATGTTTCAGGGACCTACAGCATCGAAGCGTGTCTACACAGACTGGATGCGCCACAGCAGTGGACTCTATGGCTTGGACGGTGACTCCACCACGGACTGGTCAGGAAAGAGAGGCTGGGGAAGCAAGGATATCTCATGGCTGAAGAAACGCAACTACCACATGCTAGGTGGTGCTGTGCCACAACAGAAGCGAATGTGGGGTGACAATGACATGGACTGGGTAAAGCGAAGTGTGAGTGGGCTGAGGTTAGCAGCTGTGCCACATCACATTGTAAAGCGCAGTGTCACAAGAACTGAAGGTAATACAAACATTCACAGTAATGCAGTGCAGCCCAACATAGCTGACAGTGAAACTCAGTTAAATGCTATAGAAAAGAAGGGCAATGTACGCACTGGTAAAAACTGGAGTGAGAAATGGTTGAATTGGCTAAAATATAACACAAACAAGAAAAACTGGGGTGATTCGGGTATGACATGGGTTAAGAGGGGTGATCAGAAGCGTAGTTGGGATAACCTCAATATGGCTTGGATAAAAAAAAACTGGGGTGATTCGGGAATGTCTTGGATCAAACGAGGTTTGGGGAATGAGCACTGGGTTAATGTTGACAATTCTTGGATTAAGAGAAGTAATTGGAAAGATTCAGGAATGTCCTGGATTAAAAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGCAAGATTCAGGCATGTCTTGGATTAAGAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGGATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGCAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAACAGAACTGGAAAGAATCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCGGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCGGGCATGTCCTGGATTAAGAAGGATGCCGACAAAAAGAACTGGCAGGATGCAGGTATGTCCTGGATTAAAAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGCAAGATTCAGGCATGTCCTGGATTAAGAAGGACATCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAGGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGCCATCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGTAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGCAGACAAAAAGAACTGGAAAGATTCAAGCATGTCCTGGATTAAAAAAGACAATGAGCCAAACTTAGAAGTAGCCTCCTCTAATGGTCATTTGGACAGTAGCAGCGGTAATCTATTTAAGGGAAATATAGTTGAGAGAAATCTGGTAAAGGGGCAGGTAGGAAGTCACTGA

Transcript

RPACG08814.1

CGAAGGTGGAGCTGGTCAGTGCCTTGCTGTTGCTACAGACGTACAAGTCACCTGAGTGCTAGTAGACTTTATATGGACAATTACAACTCTTGAACAGTAGTCATCAACATGTTTTTTCTCAGCCATGATGCTATTGGCACTGTGTATTTCCGGGAGAAGAACTGAACTGTGTTCTTGGAACTTTACCAGCAGCAGCATGTGATAGCAGCAGTCAGAGACCTTAGTGTATCTTGTAGCAGTATTTATTGACAATGTGTACCAGAACCGAATGGTCAGCGTGTTGCGTGGCAGCACTGCTGCACTTTACCATCACTGTACTACTGCTCTGTGATGCTGGCAGTGCCTACGAAAAGTCAAGATGTGTAACCACACCCTCTGTGGTTGGACAACTCAAACGTAGCTGGCTAAAGAGGGTGGTGTCTCTCACCCCATATTTACCAGAGACAGACCTCCACATGTGTAGAGGAGATTTAATGTACTCATCTGTTGACAAACTCAGTGTGTCTGGCCGTGTGTTTGATGACAACTGTGAGCCACTGACAAACATCCTCATCAAGATAATACAGCGGGACTCACAAGGCCACTACACTGTGTTGAGTCGATGTGAGGGGGCTGTCATCACTGATGACCGTGGCTTCTATACCTTCACAACAGTTGTTCCTGGCAGTCCATTCCTGCAGCAGTCACCCTCCATCGAGTTTGTATTGTCACGGCGAGATGACTCTGGTAAGAATGCACTTATCACGAGCGTGTTTGTCAGGAATCCCCAGGTGGACAGTGCTTCGGCTAGTGTTGACACCAAACCATGCCTTGTCATGCAGCCTTTGTTTGTTGACAATGCCAAGACATTGCACTACTTTGCAGTGTTTGATTTTGTCCTACCAACCCATGCCAATAATATGGATGAACTGATGTTATCCTCTCATTCCAAAAGTGTGGAAAAGCGGGCATGGTCAAAAGCTAACAGGGCATGGTTGAAAAGGAAGTGGGGAACCTCAGCGAACTGGCTGCCCAAAAATGACTGGGACAGCAACACCATATCGTGGCTGAAGCGAACTCAGCCAATGTCGAAGCCCATGTTTCAGGGACCTACAGCATCGAAGCGTGTCTACACAGACTGGATGCGCCACAGCAGTGGACTCTATGGCTTGGACGGTGACTCCACCACGGACTGGTCAGGAAAGAGAGGCTGGGGAAGCAAGGATATCTCATGGCTGAAGAAACGCAACTACCACATGCTAGGTGGTGCTGTGCCACAACAGAAGCGAATGTGGGGTGACAATGACATGGACTGGGTAAAGCGAAGTGTGAGTGGGCTGAGGTTAGCAGCTGTGCCACATCACATTGTAAAGCGCAGTGTCACAAGAACTGAAGGTAATACAAACATTCACAGTAATGCAGTGCAGCCCAACATAGCTGACAGTGAAACTCAGTTAAATGCTATAGAAAAGAAGGGCAATGTACGCACTGGTAAAAACTGGAGTGAGAAATGGTTGAATTGGCTAAAATATAACACAAACAAGAAAAACTGGGGTGATTCGGGTATGACATGGGTTAAGAGGGGTGATCAGAAGCGTAGTTGGGATAACCTCAATATGGCTTGGATAAAAAAAAACTGGGGTGATTCGGGAATGTCTTGGATCAAACGAGGTTTGGGGAATGAGCACTGGGTTAATGTTGACAATTCTTGGATTAAGAGAAGTAATTGGAAAGATTCAGGAATGTCCTGGATTAAAAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGCAAGATTCAGGCATGTCTTGGATTAAGAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGCCGACAAAAAGAACTGGAAAGATTCAGGGATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGCAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAACAGAACTGGAAAGAATCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCGGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCGGGCATGTCCTGGATTAAGAAGGATGCCGACAAAAAGAACTGGCAGGATGCAGGTATGTCCTGGATTAAAAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCCGACAAAAAGAACTGGCAAGATTCAGGCATGTCCTGGATTAAGAAGGACATCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGACGCAGACAAAAGGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGCCATCGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGTAGACAAAAAGAACTGGAAAGATTCAGGCATGTCCTGGATTAAGAAGGATGCAGACAAAAAGAACTGGAAAGATTCAAGCATGTCCTGGATTAAAAAAGACAATGAGCCAAACTTAGAAGTAGCCTCCTCTAATGGTCATTTGGACAGTAGCAGCGGTAATCTATTTAAGGGAAATATAGTTGAGAGAAATCTGGTAAAGGGGCAGGTAGGAAGTCACTGACATAAAGGCCAGTCAATAGGTGGCTTGAGCAAGAAGATAAGGCAGAGGTGCATCCTGTGATGTGCATGGATGTATGTATTTTAAATCTTAACAAAACAGGAATTTGTCAAATGACAATCGGTGCTGCAAATTGAAGCTGTCTAGTGTTTCCTCTGCTTGCTAGTAAAGTCATGATCACAGAAGTTTCATATCAGACATATGAATACCTTATTAGTGTGTCACTGCAGTGACAATGAGATGGCTATGTACATGTAATGATCCTTTCATGTTAGCCTTAATGGGTAGGCCAAGTGAAACTTACTTGCTCATTCAGAAATGGCTTTCTAATCGTGTTGCCACAAAGTTACTTTATTTTCAATTGGCAAATTTACCGGACATTGACTTGATGTGTATTAATGCAGTTGGATTTACGAGCTAATGCATCAGATGAATTGATTTGCTGACTTGTTCGTTGTCACTGACATCGCCGGTCATTGCTGTATCACCGAGAAATAAAATCTGACAACCATATGGAAAACTGCACACAGTGCTGTCATAGTTGTTATTGGAGTTTAACAGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000104	Family	Antifreeze protein, type I	Interproscan
IPR039355	Family	Transcription factor GATA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10071	TRANSCRIPTION FACTOR GATA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050825	Molecular Function	ice binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG08814.1 global RNA-seq network