Gene detail

Detailed information of RPACG08694.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG08694.1	XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED	tig00002288	25619	52441	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG08694.1

ATGGCGGGTTTGATGTTGAGCGTGGAGGTCGGCCTACGCGTGGTTCGTGGTCCCGATTGGATGTGGAGAGACCAAGACGGAGGGGAAGGACATGTCGGAACAGTCTTAGCAGTTGGGACTGGAGAAAACAACATTCCCACCCAGACAGCTGTGGTACAGTGGGACTCAGGATTCTATGCCAACTACCGAGTAGGCTATCAGGGAGCTTATGACCTGCGAGTCTTTGACAGTGGCCCTACTGGTGTGAAACATTCGAAAGACATATGCAGTGTTTGTAAGAGGACAGACATACCAGGTTCAAGATGGACATTGGACAACTGTACTTTGTGCCAGCAGTGTTATATGGCCGACCAACAGGATGTACACAAGAGCTTCCTCATCAGTTCCCCATTTGCACATACAGTGAATGTTCCTGTGAGAAGTGCATCCAGGAAAGTGGAGTCTCTAGGGATATTTTCTGGTGCGACAGTCACTCGAGGGCATCACTGGAGATGGGGCAACCAGGATGGTGGTGAAGGAATGCAAGGCACAGTTCAGAAACTTGAAGACTGTGACTGTGGGTCGAGCAGCAGTGTTGTGATAGTGACATGGGCAACAGGGAGAACAAATGTCTACCGACTCGGCCATCATGGGAAGGTGGACTTGAAGTGTGTGGAGGAGACTTCGGGGGGAAGCTACTACCCTGATCATCTACCTGTCCTGGGAGCTGCTGCAGTGTCCCATGATAGCGACCAAATGACATGCACACCTGGGGACCATGTCAAGGATCATGTTGACATTGATCCTCTGAAAGAGGTGCAAGAGGATCACATCACTTGTCATCCCTCAAAGGGACAGGAAGCTGACACCGCAGCCACTGCATCATTGACACTGAAGCATGAGAATGATACGTCTGACAAATCTGTTGTCGAAGATTCAACATCGTCCAGTCCTGGACAGTTGACAGGACAAACTCACAGATTTGCTATGACAGTGGCAGAAAGATTAGCTGAAGCCCAATTAACAGCTCTAGGCACTGAGAGCACATCTGCAGACACCACTGATCTGTCTGATGTCCAACCGAATGGCATGGACGCAACAACGACACACAAGGAGTCTGTTGGTATCACTTCTACAGATCTGGTAGCTGAAGTTGAAGTGACCGTTGGTCAGTCACAGTCCTCTGGAGCAGGAGCAACTCCTAAGGGTTTTGCTATGAAGTGGCCTGCAAAAAGTGGGCGACATAAATCAAAATTGTACAAATTGCACAACCTAGAAAAAAAAGATTTGGTCGACTTGCCACAGTTCCACATGAGTGCTGATCCTGATTACATTATTGGCAAAGGGAACTACGCAGTTGTGTTTCTGGGCTTTATTAAAAACGATTGGCGTGAGATAGCCATCAAGCGAATGCAAAACGTCCACAGTGGTACAACAACTAACGAAGTGAAAATTCTACTGGAGTTGAATCATCAAAATATAGTTCCTTATCGGATGGTCGATGACGACAAGGACTTCACCTACATTGCTTCTGACCTGTGTGACTACACGCTGAGAGAGTGGATTGAGTTAAAGCAGTTACACCCTCTCAGGGAATGGGATGCTATGGCTGCTAGTCTGACGAAGGATCTTCTCTGTGGCCTGGATTATCTCCACACAAGGAAAGAAAAGATCTTGCACCGTGACATCAAGCCAGGAAATATGTTCATTGTTGACGCAAATGAATGGCACTTGAAACTGGGTGATTTTGGCATCAGTCGGTCTCTGGATGAAGACAGAAGCACTATGTGTACAGGACCAGCAGGAACTAAATGCTGGAAAGCAAAAGAGGTTGTGATGTGTGAAAATGGACAACAGCTTCATTACAAACCATCCACAGACATACAGCCAGCTGGAATGGTCACATTCTTCATCCTGACCAAAGGCAAACACCCATATTCCCTGAATGGGAAAGACTTTGAAATAGAATCGAATATAGGTCATGACAAGTTCGATTTGTCAGCTGTGTCTGACCTGGTGACCAATGACATGTTGACAAGCATGCTGGCCGGTGAGCCAACCAAGAGGCCTTCAGCAGCACAGTTGCTAAGCCACCCCTTTTTCTGGAATGGCGAGAAAAGGTTCCAGTTTCTAGCAACCATCGGCAATCAGGCTGAGATAGCGAACAGCCAAAATGATCAACATAGCAACTGTCATGTGAGAAATCTGCTAGAATCTAGCACAGATATCATCCCACATAGAGACTGGACACCGGTCGCCGACAAGCTTAAGAAGTTGAGCAACAGGTTCCAGAGAAACTTCAGAAAAAAAGACTATGTAGAATCCATCTGTAAACTGTTGCGAACTATGAGGAACATACAAGACCACTTTGACAACGAGTCTGGTGAGGCACAGACAGACTTGGGAGGCACATGCTATCCATTCAGGTTCTTTGACCAAAAACTGCCGTTCTTGTTCATCAGGACATACACAATTATCGCTGATACAGCTGGTAAACCAGACGACTGGACAAAAAGAGACCAGCTGAAGATTTACTTCTCTCCACCTGCCATGTAG

Transcript

RPACG08694.1

ATGCTGTAACGCGGTCGACGCTAACCGGAAGAGTTTGCGCCATCTTGAATCGACTAAATTCGAGCCGAGTGGCGTTGTCATTTACAGCCATAGTTAATTGGTATGACAGATCAGCAAACATATGACAGTAAAAAAGCACAAAGTAGACAATTTAGAAGCGTTACTAAAAAAATTACCCACAAAGTAAAATGTTAAACGGAGCCTTGGGCTTGGACCTGGAGTTGCCGTAGTAAGTTAGCGCAACTTAATTAGGCCACCGCCTTTGGAAATGTTAACAGGGACGCGTTTGTTCTTGTAAGTTGTAGTCGGTACCTGTAGTCGGCAGTGCGTCGTGATCATTAACGCCAGGGATAGTGTGAACGATGGCGGGTTTGATGTTGAGCGTGGAGGTCGGCCTACGCGTGGTTCGTGGTCCCGATTGGATGTGGAGAGACCAAGACGGAGGGGAAGGACATGTCGGAACAGTCTTAGCAGTTGGGACTGGAGAAAACAACATTCCCACCCAGACAGCTGTGGTACAGTGGGACTCAGGATTCTATGCCAACTACCGAGTAGGCTATCAGGGAGCTTATGACCTGCGAGTCTTTGACAGTGGCCCTACTGGTGTGAAACATTCGAAAGACATATGCAGTGTTTGTAAGAGGACAGACATACCAGGTTCAAGATGGACATTGGACAACTGTACTTTGTGCCAGCAGTGTTATATGGCCGACCAACAGGATGTACACAAGAGCTTCCTCATCAGTTCCCCATTTGCACATACAGTGAATGTTCCTGTGAGAAGTGCATCCAGGAAAGTGGAGTCTCTAGGGATATTTTCTGGTGCGACAGTCACTCGAGGGCATCACTGGAGATGGGGCAACCAGGATGGTGGTGAAGGAATGCAAGGCACAGTTCAGAAACTTGAAGACTGTGACTGTGGGTCGAGCAGCAGTGTTGTGATAGTGACATGGGCAACAGGGAGAACAAATGTCTACCGACTCGGCCATCATGGGAAGGTGGACTTGAAGTGTGTGGAGGAGACTTCGGGGGGAAGCTACTACCCTGATCATCTACCTGTCCTGGGAGCTGCTGCAGTGTCCCATGATAGCGACCAAATGACATGCACACCTGGGGACCATGTCAAGGATCATGTTGACATTGATCCTCTGAAAGAGGTGCAAGAGGATCACATCACTTGTCATCCCTCAAAGGGACAGGAAGCTGACACCGCAGCCACTGCATCATTGACACTGAAGCATGAGAATGATACGTCTGACAAATCTGTTGTCGAAGATTCAACATCGTCCAGTCCTGGACAGTTGACAGGACAAACTCACAGATTTGCTATGACAGTGGCAGAAAGATTAGCTGAAGCCCAATTAACAGCTCTAGGCACTGAGAGCACATCTGCAGACACCACTGATCTGTCTGATGTCCAACCGAATGGCATGGACGCAACAACGACACACAAGGAGTCTGTTGGTATCACTTCTACAGATCTGGTAGCTGAAGTTGAAGTGACCGTTGGTCAGTCACAGTCCTCTGGAGCAGGAGCAACTCCTAAGGGTTTTGCTATGAAGTGGCCTGCAAAAAGTGGGCGACATAAATCAAAATTGTACAAATTGCACAACCTAGAAAAAAAAGATTTGGTCGACTTGCCACAGTTCCACATGAGTGCTGATCCTGATTACATTATTGGCAAAGGGAACTACGCAGTTGTGTTTCTGGGCTTTATTAAAAACGATTGGCGTGAGATAGCCATCAAGCGAATGCAAAACGTCCACAGTGGTACAACAACTAACGAAGTGAAAATTCTACTGGAGTTGAATCATCAAAATATAGTTCCTTATCGGATGGTCGATGACGACAAGGACTTCACCTACATTGCTTCTGACCTGTGTGACTACACGCTGAGAGAGTGGATTGAGTTAAAGCAGTTACACCCTCTCAGGGAATGGGATGCTATGGCTGCTAGTCTGACGAAGGATCTTCTCTGTGGCCTGGATTATCTCCACACAAGGAAAGAAAAGATCTTGCACCGTGACATCAAGCCAGGAAATATGTTCATTGTTGACGCAAATGAATGGCACTTGAAACTGGGTGATTTTGGCATCAGTCGGTCTCTGGATGAAGACAGAAGCACTATGTGTACAGGACCAGCAGGAACTAAATGCTGGAAAGCAAAAGAGGTTGTGATGTGTGAAAATGGACAACAGCTTCATTACAAACCATCCACAGACATACAGCCAGCTGGAATGGTCACATTCTTCATCCTGACCAAAGGCAAACACCCATATTCCCTGAATGGGAAAGACTTTGAAATAGAATCGAATATAGGTCATGACAAGTTCGATTTGTCAGCTGTGTCTGACCTGGTGACCAATGACATGTTGACAAGCATGCTGGCCGGTGAGCCAACCAAGAGGCCTTCAGCAGCACAGTTGCTAAGCCACCCCTTTTTCTGGAATGGCGAGAAAAGGTTCCAGTTTCTAGCAACCATCGGCAATCAGGCTGAGATAGCGAACAGCCAAAATGATCAACATAGCAACTGTCATGTGAGAAATCTGCTAGAATCTAGCACAGATATCATCCCACATAGAGACTGGACACCGGTCGCCGACAAGCTTAAGAAGTTGAGCAACAGGTTCCAGAGAAACTTCAGAAAAAAAGACTATGTAGAATCCATCTGTAAACTGTTGCGAACTATGAGGAACATACAAGACCACTTTGACAACGAGTCTGGTGAGGCACAGACAGACTTGGGAGGCACATGCTATCCATTCAGGTTCTTTGACCAAAAACTGCCGTTCTTGTTCATCAGGACATACACAATTATCGCTGATACAGCTGGTAAACCAGACGACTGGACAAAAAGAGACCAGCTGAAGATTTACTTCTCTCCACCTGCCATGTAGAGAGAGAGAGAAGAGAGAGACAGACAGAGACAGACAGAGACAGACAGAGACAGAGACAGAGAGCATAGGAAGTGCAGTGGCTATGGTTCTTTCTGGCGTCAACACATGGACTTTGATCAAAAAACCTAACTCTCAAATTGGGGACCAGTATCACTGGTGATGTTCTGTTCTGTCTCAGTTTGGGTGTTCCGATTAAAAGCTGAATAGTTAAGTGGAGTCTCGGAATATTGTTTGGTTATTAACTACAATATATAGCACAGTGTTACAGACTAATGAGTTAACAGAATGTATCGCACGCTGGAAACAACTAGAACAAGCATTATTGCATAGAGACCACAGGTGACAGCTGCTTCTCTTATCTGATATAGATGTCATCTTTGCTAGGTGTGGAGTGTCATTTAGTTATTAAGTATGCATGTGTAGATATATCCGAAATACTGCATGAAGGGTCATTTAGAGATAACTTTAAATTTGTTTACGTTTTGGATGGTTTTGAGCATGTTCATGCAAGTGTCTTACATACACCAAGTTTCCTATGAATGGTCATATATGCATTGTTTTGTGACATTGACTAATATTACCAGCTTTGTATCTTCTTTAAAACTGGGTGTCTTAATGATATAAACACAGTGTTAAGCATTTTATTTTTTAAATACTACTGCACATAAATAAGTATTATTCAGTTTGATTTTCTCAACATGATTTTGTTGTGTACACCTGAATAAAGTTGTGTTTAACACTATATGACACTTGTATATGCACATTAATACACAGTTTCATCATCAGATGTACCTTCTACTAACGGTTGTTACATATTAATTAAAAAAGTGCTTTTGTTGATGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03105	SPX	SPX domain	Domain	Interproscan
PF03124	EXS	EXS family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004331	Domain	SPX domain	Interproscan
IPR004342	Domain	EXS, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10783	XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000822	Molecular Function	inositol hexakisphosphate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006817	Biological Process	phosphate ion transport	Interproscan
GO:0015114	Molecular Function	obsolete phosphate ion transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016036	Biological Process	cellular response to phosphate starvation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG08694.1 global RNA-seq network