Gene detail

Detailed information of RPACG08241.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG08241.1	NERVE GROWTH FACTOR NGF -RELATED	tig00002165	787080	804700	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG08241.1

CGTGACTGACTGGTGGCACGCTTGCACGATTTAGAAAAATAAAATTTCGTTAATTGTTGTAGCGCGTTATCAAGATGTCCTTGATTTGTGCTATTAGCAATGAGGTACCTGAGCATCCTGTTGTCTCGCCGGTGTCTGGCTGCATCTATGAGAGACGACTCATTGAGAAATACATCGCAGAGAACACTGCCGACCCATTCAATGGGGAGAAGTTGGAGATCGAGCAGCTCGTCGATCTCAAAGCGAGTCCACTTGTGAAGCCACGCCCACCGTCTGCCACCAGCATCCCTGCCATCTTGAAGGCTCTGCAGGATGAATGGGATGCCGTCATGCTGCACAGCTTCACTCTGCGACAACAGCTACAGACAGCAAGACAAGAGTTGTCCCATGCCCTCTATCAACACGATGCTGCGTGTCGTGTCATCGCCCGTCTCACAAAGGAAGTGACAGCCGCTCGAGAAGCTTTGGCGACCCTCAAGCCCCAGGCAGGAGTGGGAGGTCAGGCCGCCGTTGGAGGAGCGGCCCTTCCCCAGCCGTCGTATGGAGCAGAGGCTGGGCCTGAAACAGCAGAGCAGCCCATGGAGGAGGCTGGCATGACAGACGAGATACTGCAGAAGCTGCAAGAGAAGGCAACTCTGTTGACAGCCGAGCGAAAGAAACGAGGCAAGACAATCCCAGAAGGTCTTGTTACATCAGACGACATCCGCGGCTTCAGACAAATGGCTTCACATGTTGGCATTCACAGTGCGAGTATGCCAGGAATTCTCGCACTTGACATCTGCCTGCGTGACACCTCGAAAATTATCACAGGTGGCAATGACAAGAATGCTGTGGTGTTCAATAAGGACACTGAGCAAGTGATTGCTAGTCTCCAGGGGCACACCAAGAAGGTGACGGGTGTTCTCTATCACCCCGAGGAGGAGCTTGTGTTCACTGCATCACTAGACAGCACGATCCGCGTGTGGGGCGTGCAGCAGACCGCTCCGTGTGCACACGTACTGCGTGCGCATGACGGCCCAGTTACAGGCATCAGTCTTCACGCAACCGGCGACTACCTGCTCAGTTGCTCCACTGACTCTAACTGGGCGTTCTCAGACGTGCGTCAGGGTCGAGTTCTCACCAAGGTGCCTGACAGCTCCTCTCAAGCTCTCACTTGCGCCCAGTTCCATCCTGATGGTCTCATCTTTGGCACGGGAACAAAGGATTCTGTCGTCAAGATCTGGGATCTCAAGGAGCGAACGAACGTCGCCAACTTCCAAGGTCACTCTGGCGCCATCACCAGCATCTCATTCTCGGAAAACGGTTACTACCTTGCTACTTCGGCTGACGACTCGGTCGTCAAATTGTGGGATCTGCGTAAACTGAAAAACTTCAAGACCATCACCATGGACGACAGATATGAGGTGCGATCTCTCTGCTTCGACCACAGCGGCACTTACTTGGCAGTGGCAGGAACAGACGTCAGGATCTACCTGTGTAAGCAGTGGCAGGAGTTGAAGGTCTTCAATGACCACACAGCTTTGGCCACTGGTGTCCGGTTTGGTCAGAACGCCACCTTTGTGGCATCCACCAGCATGGACCGGTCACTCAAGATCTTTGGCATGTGAGCCTACTGATCCTAACTGGAACACTTCTGGGGTTTGCACTCTACAGGACTTCGTGACTGATTTTCTTGTCTTTGTCAACATGTGACACTTATAGGTGATTAGCTGTGGTGGAGCAAAGTACTGTTGACATTTATGGCGGTTGACGCTAGCTGTCATATTGTGACAGCTGTCTATACATACAGCATTACTTACAGGATGTGTTGTTTCTTGTGGTGCAATAATTTTTGTCTGCCACACCCACATCCTGTGTAACAATCTGCTGCCCGGTTTATGAGTAGGAACATCAAGTAACCAAAATGACGCCTTTGTAGTAATTGGATGACTGATGTCAATGATTCAGTAGCCTCTGGGCAAATGGAAAGGTTCACGGTATCAAAACAACAAATAAAGGTTGCACGTTTCAAGTTGTTCCGTACGAGGATATTATCATTGACACGATGAGTAGTTTTTGGCACTAAAAGCGGCGTATGCATTTGTCTACGTGGGAAACTTCCGGGGAGGCGAAAACCGAAATCCAGTGTAATAACTGGCACAAGTAACAAACACCCTGCAATGAGTAGTAGGGTAAATACAAGATGAAAACAGTGGGGTGATTAGTTTTATTTTCGGTACTATGGGACCACTTGCACCACGTGACACCGCCAGGACGTGTAACAATGTGCTTCATTGCTTCAGTAACAGCAGCACAAGGGAGGCATATTAGTAGTTTAGACATTGGATGTTAGACATTATTTTTTCTAGTAAAGTTAGTTGTGTACTCGTGATTATTACACAGATTGTAATCCTGTCGTTAACCTGTTGAGTGACGATTTAATGCAGTTCTTGTATGTTCATGTTTAAACCTGGTGACATTTTCTCGAGACATGACGATTCTGGTGACGTTGTCCGAGTGCGTTTTTGGTGACATTTGTATGACTGCCATTGTGGCATGCTGGAGACCTTGCATGAAATAGACTTCGATGTGCATGTTTGTGTCAGGTCATGCGATGTTATGTATTATATCCAAGACTAGATGTAGAAAGATCCAAGGACCAAGATAATGAGCTGCTACAGAAAATCTGTCATTACTCTTGCGACACGTCGGTGTTGACAGTTTTTGTGTGTTAAGAGCAAACTTTATTTTAGACAGAAGCCCTATGCTTATGAGCTCTTGAATAGTAGCGACATCATCGAGATAAATGAGCCTTGTAAATAGACACGTTGCAGACGCACTAGATTTAATCTGTCATTTGTATATGTGGTCCACCTTTGAGAGATCGAGTCGAGTCTGTGACTTGGCTCCATGAAGAGTCGGAATGTAGGTAAAAACTTGATTGTATCTTAGTGACAGTAAAGGTTCCGACAGGAGTTGTCACAGGGGTTAGTAAGATTGTGTTACAGTTGTTACACATGTTTGCCGTGATGGCTTTAGGCGTAGTACACACAATCGTCTCTGCATACCACAATCACAAAATTATCTGATTCGAAATGACACCGATGGAATAATTATGTGCAAACTGGTGGAATCGAATTGCACTGGCTTGAATTGATTCGTTTGTATGCAGGGATTATTGCACTGCTGATGTAAAATATAAACTAGTTTCGTTCATTGCCACGTTTGAGGTTAGTTGTCAGGGCCTGCGAAGGAAGATTCACACATTTTTTGGTTTGCTTTTTCTGTAATAAAAGTAACAAATACACTGGTCGTTTCTGTGAAGTGTTCTTAGAAAATTTGCTACAGTAAAGTCTTATTAGTCACCTGTCCATAACAAAAACCTGTATATAATGAACACCTTTGAAAGTCGTGAATGACTAGCTTGTGTTGCCCTCTGCCTGGCTATGATGTATACAACGCACAGTCCGGATGACGACTTCAGAATTTTCATTATTTTAAATACAGATTGACATTTTGTGTTCACTGGAAAAACAACTGTTGGTGCGAGAAACAATTGACAGTGGTATGACTCGTATAGTAACCAGTCATTTTCAGTTTGGGCACAACAGAAAAAACTGTTTTATTCATGGAGTACTACTACAATTAATGCCAAGGTGTCAACGTTTTGCAGTTTCTGCCATTCTGAAGCAGCATTTTTCTGTTGGTTTCATAAATGTGATTTTCTGTTTTTTGTGGAAGGCTAACTCTCCCAACCAGGTGAGCAATGACCCATTACGTTTCAGTGTGGTGGTCATTGAGACTCGGTAATAAAGACGAAATATGGCCCATATGTTATTATCGTTAATGCCTACGTTTCAAACCTAGTAACATCTAAGGTTTTTTACCTCGCATGTCCTAAATATTAATGAGTTTATTCATGTCATATGCCAGCTTGTCAGACGGTCAAGTCCCAACATTATCATGAGTGGTGACTTGTTAGATTATACTGATTGTGTGCAAAGAATTGTTTTTTCATTTGTCGCCAATTAGAGCACTTTTCTGTTAGTGTAGTAAATAGAACATTTTGTTCAGAGCAGATAGACATAATGTGTCTGCTCGTCCAGAAGGTATCAATCTGTTTAATTTTAGGTTCTAGCCGTAGGCTATGAATTATATACAGCAATCAGTTCTTGTAAAACACTGCACCATATACTGAAAGCAGATTAGCAATAGATGCTACTTTTTGGATAAACTAAACAAATTTAAGGTTTCCTTGTCATGCAGCATAAAACATAATTTTTAGTCACTCAATGCTATTCTGTGTAATTACGGTGGACGGATACTTAATTTGGTAAAAAATTGCAATTCTTCACGAAATAGTATTATGAAAGATGTTTGAATGTTTTCCCCAAAAGACCGCACGATGTGATTAATTGAAAAACAGCAACAAAAATGTGATATACTGTTCGTCGGATTAAAAGATCAATGTAAATTAACGACCTTGCAAAAAGGGTGTATTTGTCATATGTACAACTAGTAGTGTGTTCAAAATGAACACCTGCTGTGTTGAAACTGCTACAAAATATACTGTACCAATATAAAACTGTGTTTGAACAAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00243	NGF	Nerve growth factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002072	Domain	Nerve growth factor-related	Interproscan
IPR020408	Family	Nerve growth factor-like	Interproscan
IPR029034	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11589	NERVE GROWTH FACTOR NGF -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005102	Molecular Function	signaling receptor binding	Interproscan
GO:0005163	Molecular Function	nerve growth factor receptor binding	Interproscan
GO:0007169	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0008083	Molecular Function	growth factor activity	Interproscan
GO:0021675	Biological Process	nerve development	Interproscan
GO:0033138	Biological Process	positive regulation of peptidyl-serine phosphorylation	Interproscan
GO:0038180	Biological Process	nerve growth factor signaling pathway	Interproscan
GO:0043524	Biological Process	negative regulation of neuron apoptotic process	Interproscan
GO:0045664	Biological Process	regulation of neuron differentiation	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG08241.1 global RNA-seq network