Gene detail

Detailed information of RPACG08192.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG08192.1	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	tig00002137	623	29765	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG08192.1

MVNGDKRRGRRREEWTETRGVDGDKRSGRRQEEWMETRGVDGDKRSGRGQEEWTETRGVDGDKRSGRRQEEWTETRGVDGDKRSGRRQEEWTETRGVDGDKRKWGDWTACSEACGGGEQVRQKTCIVDGKSVECGNDTASCNRQACDDPFANATWTDCNTKCGTGNRSRHGLDGETQSIKCHTQSCIPVMNCTADVIFIIDSSGNIGEQQWHVVKQLVIDVILGLNINASGSRVGVVVFSTLVDIVFNLDEYDNPLNMVSSVWNMSYMADAVNTADGIRTMHEMFSETGRPDVQQIAILLAANTSNVNSPRTVPEATSAKDDDIYIVVLGKTSWSGRAVVSSYHLQLFLRRSFPTYLCLDGYDKDIEAPSIANEPDAVIALNTSDNRNANNMTKIILNLTCGIAQLRQCDECVWSACNETCGTTGTKTGTKVCWEIDPATLLEKNGSRTENVTCRPIKCYIPCQTSVPNAYTTSVETTIMSTTADQSTSSNDQTTTEIVTSTTSETTTEPTTSTSSWTTSFEMSTQSEETTTQPTETTTEIPTTDNDATTILEETTEKQSTSSNDQTTTEIVTSTTSETTTEPTTSTSSWTTSFEMFTQSEETTTQPTETTTEIPTTDNDATTTLEETTEKQSTSPNDQTTTEIVTSTTSETTTEPTTSTSSWTTSFEMSTQSEETTTQPKETTTEIPTTDNDATTTLEETTEKQSTSPKDQTTTEITNEIISHSFATYTEPSTSEPHPYPTEPRKQTTAESVSASRPPTATTTTQPKWHVDCFRCDLAMGQLWRPDPFNCHMFFICELQPGGIYRAHHMTCGHLFWDQTLRSCRTVKTGNCVIADVNVLSTTSPVATAKASCPLHPYPGDARKFWMKGDPTSVQWCAEGMEFTNEGELCDCIVIAPVHRSCFGDLLLHMPFNHHFDDVTCNKAVATRYGKGVSIVNDPDRGRVAFFSGRGYLDVSFMRSWFAASNVNKFTIKLWFKWTGNPAKTGAILNNGDCYSSSNIQITVKDGAIFAGVKTDGSGEITTSPQTVTTHRWYEAKWMYDGALLKFYLNDELVQVAAARGFLSNTDVPMHIGSVCGADHFVGYLDDSRGSACDVCWFHRDKSRGSACDVCWFHRDKSRGSACDVCWFHRDKSRGSACDVCWFHRDKSRGSACDVCWFHRDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACKLCWFYSDKSRGSACDVCWFYSDKSRGSACKLCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACKLCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACKLCWFYSDKSRGSACKLCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACKLCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRGSACDVCWFYSDKSRVMASSVLLLASLAVVYLNVGIDVVSGGKFGEGLPTLAVDEIDIWPDTRTFMEKYVFPMKPVAIRGVVAGSRAAILWRSDDYFLSLPIGNHVDAIMVETMKKESRLQRSESLSFKEFIRTYNQTGYYMVNAVPPYLQQDVPLPEPLQCDQLYKDNLVENVMWISSGGTKSVVHTDAADNINCQYVGNKTFVIVDPQKYGEQVDIDHPEGAYSGVDVDNVNYTKYPGLADVKYYIVNVSAGDCIFLPHKWIHQVRSFGRNIAVNLWFDHFKNKNVDLDKCSRTPKSEMTFEGLKFIGFDALIHSPEAMRDHLVDLTKYREPLSPEKVMELVIGTVESAMPAKEMFLKIFEMLDANSDGLLSHLEVQEASDEVWDSVTPLFDTIITSLEDAESDENEGEEYETMEGDNDAEKEEPQTERDEL

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR003347	Domain	JmjC domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12461	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG08192.1 global RNA-seq network