Gene detail

Detailed information of RPACG07955.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG07955.1	YCCV-LIKE DOMAIN-CONTAINING PROTEIN	tig00002083	753321	760721	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG07955.1

ACACGATTGAGCGAAAATGGCGGCGAAAAAGAAGGCACTTGTTAGTAAAGATGACCTGAGAAGGTTGATGAAACAACAGAGAAACTCAATTCAATCAAGTGCAAAGAAAATAGACTCGCCGTTGGCAAAATACAACAATATTGGTCAGCTGACGTGCGTCCTTTGTAACTGCCCAGTGAAGAATGACCTCTTGTGGACTGCACACATACAAGGTCGCACCCATAAAGAGAATGTTGCCAAGCTGAAGGTGCAGAAACAAGAAGTGTTCACGAAGCCAGCAGCACCGCCACCACCAAATGCCTTGAAACGTAAACAGCCATCAAATTCCTCTGATATAGTTGTACAGAAGATAAGAAAAGGTCACATAGAAGACAAAGTGGCAACAGCCAGTGAATCTGAGTCACATACTGAAAAGGGCAGTGGTTCACCTCACCCAGCAACGAACAAAGCGTTACCAGCAGACTTTTTTGACACTGGGTTGCCTGTGGGTGATGTTGCCATGGAGACAGAGACAACAGACCATGGGGAGACATCTCAGTCTTCAGAAGAACAACTCACACCAGACAAATCAAAGCCAATGGCTGAAAAATTACCTGAAGGATTTTTTGACGATCCAGTGAAAGATGCCAAGGCCCGTGAAGTCGAATACAGGAACAAGATGGATGATGAGTGGGAACTCTTCCAGCGCATCATGAAAGATGAAAATACAGTGTCGGAAGCCATTGAAGAAGAAGAGGAAGAACAAAAAACAACGGAGAGAAATATTGATGAGATAGATGAACAGATCCACCTATGGTCGCAGGTTGACAAACTGCAGAAGGCAAAGGAACAGCTGATGCTGCAAGAGGCTCCACAGGTGGAACAGCAGGAGGATGAGGAGGAAGAGGTCGATGAGGAGCAGGAGTTTGACGAGTTCTTGGACTGGCGCAGCAAGAAGGCTTGGAAGTAGAATCTCAACAACTCAGCGTCGTCCGAGAACACAGCGACTCTGCTAGAGGATCAGGCATGATTGGGTGTCCTCACTGGGCGCAGCTAGTGTCATGACTAGGTCAGAGGCCATGCCACAAAAAACTTGGTCAAAGATATTGTGATTGGAACAACAGTGAATGTGGTATCACCACGGGCGCAGTGGTCAAAACCGGTCATAGCTGAAGAGTTGGTCAGCACATGTCTCAGAATCACGCTGTAACGTTGTAGAGACATCAGCTGTGTTAATGTTGTTGTGGTCAGTGTACAGCGGAATAGACTGGCCACATTGTGCATGAAAGTTTTGATCATTTGAGCTGCATCTAATGCTCATTGGCCCGCAAACCTCCAGTGTATTCTAGTTCGCTGGGCGGCTGTTACTGGTCATTGCAGAACATCACATGTTGATACTTATATGAAAGAAATACTGTGAAATAATATGCACAAACCTTTGTTTAAACAGAGGAATGTATTTTCTTGTAGCATAAGAGGGCCCCTTCCAGCATCCCATTGAGCTAACAATTGCCCTGTAGCACAGGCTGGCATAACATACACAATGTCTATTTCTTTTCCATTTTGATGGCCACATTTTATCTGTGCTGTCCTCTATAGGCAAGTCCTTACCCTTAACACAAACCATCTGCACTTTGGAGATCTCCCACTTCTGTCCGTCTCTTCTGTTTTCTGTGGTCTCTCTGTCGCTCTCTCTGTCGGTCTCTCTGTACAAGGCCTCCATGTCTCTGTCTGCTCTTCATTATCAGCATTTATTCAATGTAATTCTTCTTAATCCTCACATCTCCATTCTATCTTAGCCCATCATTGCCAGAAGCTGGAAAACACCTGAAATATTCCCTTTGGCTACATGGTCAACTATCTGTTCCACATAAATCCACCTACCTGCTCCATGCTGCTCGTACTGACAGCATCCTCTGTGCCTTGTTGCTGTTTTCCCAACAATGTCTTGTTTAAAGGTCTTCCTATTCTCTGCTACAAATGCACCTCCTCTTGGCCCATCATTTTATGTTTTTTTCATGATTAATTTTATTTTAAATAGCTCTTAGTGGAGGGCTCCTGAAAAAAACATGCTGCATGCATATAAAATGATGTAGACCGTAGTGTGAGTTAAGATATGCTGTACGCATGCAGAAATAATATTTGTGTGAATTCTGATGTAATTGACATCCTGTAATATTTTCGACATGTCGCATTCATTAGCAGTTTACTTGAAAATATAAAACATGTGGATACATTGCTTTGTCATTCCAGTAAACAGGTTTTATCATGTCTGAGTAATGCCAGGTAACTTGAAAAGTATACATTTTGTTGAAGACTGGGCTCCGTAAAGCATGTTATGTTTGCAGATTATGCAATTTATAATGTTAAGTTTGGAGAATGTGGATCATGTCTGGCATTTTAGTTGGCACATGTGTGGATAATTCATACAAGTCACTTTGTAGAGGTTACAGTTGTACTCCCAAATGTGATAAGACACAAGTTGTTTACAAATGTAACAGTTGTAGAACTATCAAGATCAAAGGTTTTACGAATGTTCAGTTAACTGCCATTCTAAAGCTGTCTGCTAAGCTGTACTGCTAACAGCGGATTGCCAGTGTTGTCTAATAAAAGAATTATATTTTTATGTGACGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08755	YccV-like	Hemimethylated DNA-binding protein YccV like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011722	Domain	Hemimethylated DNA-binding domain	Interproscan
IPR036623	Homologous_superfamily	Hemimethylated DNA-binding domain superfamily	Interproscan
IPR053189	Family	Chloroplast Clp protease adapter protein ClpF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48351	YCCV-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG07955.1 global RNA-seq network