Gene detail

Detailed information of RPACG07225.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG07225.1	PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE	tig00001876	717709	719770	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG07225.1

GAATAATGACTATGTTCAAATTGTGATGAAAGACACTGCCAGGCAAACTGTGTGGATGAAACAAGTAAATGAGAAAAACCCACCCAAAGACTTGTTGAAACTGAAGACTGGTCATGTAGTTGATTCAGTATCAAGGAAGTGCATTGGAAAACAGACACAGGATGATCTTCAGTTTAAGGAGGTAGCCAAGGATGTGTTTATCTACTCTGCATTCTACGACAGCAGAGACAATGACTTTGAGGACAAAGATAACAGCAGTTCTGTAATACGCTTGATGGCAGTTCTGCCGATTATTATGAAACAACGTTACCCAACACTTTACTGTGTAGGATTATTAACATCCGGACATTACTGGACTGTAGAGGTGATGTTCTATGAAATGTGTGAAAATCACAATAGGTATTATGGTTCATTCATTTTGTCATGCCGTCTGCCAGCGGAACTGGGACAGACTCCCCCATGTTCAGTGTTTATTTCATCACTGCCTGCACCAAATGAAACATTGCATGGGTTCAAAGTTAACTCATGGTCACCATCCATGACTCACAAACACAAACTTGAGGTTTGTGTCCCACCTTTATTTGGCACAATTGACCAAATGGACTTGATTGAGTTTGTCGAATTGGCACGCCTGTTTGGGGCCGCAAAGATACATTTTTATGATGCCGAAGTGTCACCCACTATTCTAAAAGTGTTACTATACTACAAGAAACATGGTATTGTCAGTTTGCTTCCTTGGAAGTTGGACGATCGAATGAGAGATGGTAAGCTGCACTACAACGGCCAGTCAGTGAACATTCAAGACTGTTTGTATCGTAACATGTTTGCAACTGACTTTCTTGCCTTCATGGACATTGATGAGATGGTGGTGCCAAGAAAACACTCTAACTGGTTCTCAATGATCATGTCTGTGACAAATTATACTGAACAGGCTGGCTTCAGTATTATCAGTGCCTTTTTTGACCCCCGCTGGAGACTGAAAAGCAACAGTAGCTTGAAGCTACATAAGGTCAAGGATATCATGCGGACAAAACAGCTAAGTCGCTACCGTACAAAGTGCATTGTAAACCCGCGGTGCATTTTTGAAATTGGAATTCATCATGTCAGCAAGCCAATTATGGCTTCCCTGAACACTGTAAAGCTGTCTGACAAATTTGTGCTATTACATCACTACCGTATTGCTGAATGGTTCTTTGGTTTAAACTTTAATAACTACATTGTTGATGAAACTCTGTTAACCTATGCACCTCAGCTAGAGATGGCAGTCAGGACAGTTCTGGATGCTCTCATGATGTAGTTTCTTTGACATCACAAAAATGAGCCAGAGATCAAGAGGTATAGTGACACTGATGATGTACATCATTTGACATCTCAACTAAAGACAGAGGTCATGTGAGTTTTGATGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGATGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGATGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGATGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGGTGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGATGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTCATGTGAGTTTTGGTGATGTACATCATTTGACCTTTCATCTAGAGACAGAAGTTGTGAGTTCTGGTGATGTACATCATTTGGTCTCTCAACTAGAGACATGTCATTTAAATTCTGATATACATCATTTGACCTCTGAACTAGAGACAGAAGTCATGTGAGTTCTGGTGACACTGATGATGTACATCATTTGACATCAGATGTCATTTGTATTCTGATGTACATCATTTGACCTCTCAACTAGAGACAGAAGTCGTGTGAGTTCTGGTGACACTGATGATGTATATCATTTGACCTAATATGTCATTTGAATTCTGATATACATCATTTGACCTGTCTACTAGAGACAGAAGTCGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001193	Family	Membrane-bound transcription factor site-2 protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13325	PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031293	Biological Process	membrane protein intracellular domain proteolysis	Interproscan
GO:0051091	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan
GO:1905897	Biological Process	regulation of response to endoplasmic reticulum stress	Interproscan
GO:1990440	Biological Process	obsolete positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG07225.1 global RNA-seq network