Gene detail

Detailed information of RPACG06799.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG06799.1	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	tig00001822	474780	480508	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG06799.1

ATCCCAACGCGGATTTTGACAACATGGCATCGAATATTAATATAAACGTTAAAAATGCAGTTATATTCATTACCGTAGTTGTGGTAATACTGTATTTTACTGGAATACCAGTGTTAAATAGACACACAAAATTAATTAGCATGAAAGAACTGTTGTCGGTGAGCATAGATATAGCTGAACGTGGCGGCGTTCGTGTCAAAGTTGTGAGGGAGAGCAGTTCGTTGGACAAGACGTCCAAGGGAAAGACCAAAGAAGGCGTTAACGATGTCTTGACAGCGGGCGATTTGCAGTCACATTTAACCATGATGAATGGTTTCAAGATAGCATATCCCGGATTAAGAGTTATATCTGAAGAACACACCAAGCAGTTGGCAGATTTTAAGATGGACACTTCTGTTCCCAAGAAAAACTCTGATCAAGTCGCAAGTTTGTCTAGCACTGACAAAGTTCCTCAGGCAGACATAACAGTTTGGATCGACCCGTTGGATGCTACAAAAGAATACTCAGAGGATCTCAGACAGTACGTAACGACAATGGTTTGTGTGGCAGTGAAGGGTGTACCAATCATTGGAGTTATTCATCGGCCATTCACTGGCGAAACTGCATGGGCATACGTTGGTGCTGGGTACTCAAAGAATCTGAAGGTTGCCAAGATGGAAGACCTGGCAAAGGAGCCAGGTAAAATCATTGTGTCTATGTCCCACGCCGGCGAAGTCAAGGAGCTGGCAAAGAAGAAACTGGGAAAGAAGGTTGAAATCGTGAGCGCTGCAGGAGCAGGCTACAAGACACTAGAGGTTGTGAAGGGGGCTGTGAACGCCTACGTGCATACAACGCGCATCAAGAAGTGGGACATCTGTGCAGGCAACGCCATTATGCGCGCAGTCGGAGGCAACATGACAACGCTGAAGGGAAACCAAGTGGATTTCAGTGGCGCAGGTAGCCCCATCAATGACAATGGACTGCTTGTCACACTGAAGGACCATGAAAAATACCTCATCATGGGCACTTGAAAACATGCAATGACACATGTCAATCCATTTCGCTAAGGAAAATACATTATTATACATTAGTCGTTGTTAATAAATAAAAAGCTTTTTACAAAATGCCATAACCCATGGCACTATTTCAGGAAGCACCAGGTGGTGCGTCCTATTCTGACAGTTTTCAGCATATTAGATCAATGTTTCGGAGCGAATCAAATTGTAAGGTCTTGAGAATGTTCGTGAAATGGTCTCACAACCTGTAGTATTATGATGAATGCGGCATTTTGTATTACAACATGTATGGTTTCATTAGTTGCAGCATGGCAGAAACATATGCTGGAATGGTGAAGTGTTATCTAATTTGCACGTACAAATTACTTAACTCCAAGGGTTGAATCTCAAAGGGAATTCTAAAAAATGGGAATAATTACATGGTAAAACGTGTGCGTGTGTGTGTGGTATCGGTAGGCGTGTTTGATTGTGTGTGTGGAGGGGGTCGTAGCAGCCATTGTTAATGTTCATTCCATGATAACTGCACTAATTTTAAAATAAGGTCAACCTATTTTGTGCTGAAATCTTAAGAGACTGCCATCTAGTTCTGTTAAGGAAACTTGATCATTAGTCATAACCTGTTATTACCTGCCATATTACAGAGGATATGCAAAACTGCTGCGTCCCGTTGTTGAAATGTGGCCAGTTTTCAGTATACAAGGTCACTACTAAGGTTCTTTCAAGTGCAGTTGTTTCCATGCAGAATATGTTTTGGCAGTGCTGAGGTATGCTTTTGCATAGTTCTTGTACATAACTAGTATACCCCATATCTTTCTTTGTCTTTTTAAACGTCTTCCATATTTGCAAAACTAAACAATTTGCATATATATATATACATAACCATTATTTATTAAACTAACTCCAGTAAAACTAAAATATTGCTTCTCGGACAGTTTCAGTAACAATTGCCTATTAGCTACATGAGTATTACTGTCTTGGCAACAGTGGTCTGTATGTCAAGATCAGTTTGAGTTGATGTGTACATGTTCAAATGTAATAATATATATAATTGAATTCATTTCCATGCCATTATGGTGGAAAAATACCCTCCTTAATTTAGTTATCAGGTACATGAATGGCGCCATTTCTAAGTATAACGTATTGTGTTGTATTGTATACTCTTGGGACCAACTAGTAGGGTTTTTAATTAATCTCATGTAACTGATTGCGAAATAGATAAGCTTGCAGTATTTAATATTTTATTATTTTTTTCACAATTGTCAAATACAGATGATTCCCAGTTCTGCACATTAGGAGTGTATTTATTCATTTAACAAGACTATTTTCATACATAGAACTCAAGATTATGTTCCATTTTGATATTAATAGCGCAGGGTGTTCAAGTGTCTATATCCTCTAACTTATTCGTGCGAAATGATAATAAACTTAAATTTAGTACTTTCTGGTGTGTTTTAATGCAATGTTGTTCTCTTTCTGTGAAATCCAATCAGAGGCTGGCATCGATATTGTGTCTTGACTTTTACACTCCTTTTGCTCTGGTCTCACAGGGACAACGGGGAGAAGTGGGTTGTGTGGGGAGGGACACGCGATAATTGGGGGATAGATTCCAGGAGGCAGCATTGGATAGAAATCTTTGGAAAGAAAGAACACGAGTGATTCAGTAGTATTATAACTGTCCCTCACTCCTGTCCTGCAGGGAACAAGGAGAACAACTGTCTAGTCCCATCTCTTCCACAGCAGTCGTAACTTAGCTTTACATTGCGTGGAGGTGTACTCAAGGCCAATTTTACACATGTGTAAACGTATTACCCAAGTGAAGGAATTTTTTAGCATCAGTGCAGGTACGTTGTGTTGTACGATATACGGGTTGAAAATAAAACTAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08271	TF_Zn_Ribbon	TFIIB zinc-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000812	Family	Transcription factor TFIIB	Interproscan
IPR013137	Domain	Zinc finger, TFIIB-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0070897	Biological Process	transcription preinitiation complex assembly	Interproscan
GO:0097550	Cellular Component	transcription preinitiation complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG06799.1 global RNA-seq network