Gene detail

Detailed information of RPACG06634.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG06634.1	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	tig00001791	285432	309584	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG06634.1

ATGTCTTTGAAGTTGATGGTTTTGATCACGTCGGTTCTAGTGGCGGTGGACGCTACTAAATTTGGCCTCACATTTATGGTTTTGTCAGGAAGCCACATAAAATTGGAGATACGCAACACTACAGTGGCTGTTTACAATACACGCAACCAAACCGTAGAATTGGAGCGTTTGAGACAGTTCATTGTGACGAAGCACAACGAACTACGGGCGACTGTGACCCCGCCGGCCATAAACATGCGTAACATGAAATGGGATACGGAATTGGAGAAGTTTGCAAAAGAAGGGGCCAAGTGTCGATACTTGCTTAAACACCGCCAAAATCGCATGGGTCACGGCGAGAACGTATTTCTGCTACAATCTAATAGGTCACTGGACGACATGATTTTTAATCTAAATAACGGTTTGAACCACTGGTGGGGAGAGAACCGCTACTACAACTTCGCGGACGGTTCATGCAGCGCCAGGACGTGCGGTCATTACACACAGATGGCGTGGGCGATGACGACATTGGTGGGTTGCGCCTGGAAGATGAACTGCCCGTTAAGCTCACCCGGCATAGTCTACAAATACTCTTTCCTGCTTGTCTGCAACTATGAATTCGTGGGAAACCATCGAATTCTCAGCGCAAAAACAGGGACATATTTCCTTGTTCCACCATATATTACTAAAGAAACAAGTTATACGAGAAGTTCGACTCGTCCTACACGACGTACGACAGTCCGCCAGACGACAACGACACAGACAACGACATTGGCATCCACTCTCTCAACGAAGCCACAAACTACGACAAAAACGACACCGACTACTCCTCTGACTATAAGAAAGGGTACAACAACCAAGACGACAACAACGCAGAAGACAACGTTGGCGACTACACCGTCAAAGATTGTCGAGACCACGACGAAGATGACACCCCCGACTCCGACAACTACACGGAGAGTTCGTCCGAGACCCGCTACGTCAACCCGTACAACCAGTCGGTTGATAACTGCGAACAAGCCTTCGCCAATGGACAGGGCATGGGTGACGCCCTTCCCCGTACATATTTCAACAGAAGCAGACCTGATTTCTTGCATCACGTTCGACCATGGTTGGGATCACTTACAGAATTTGAAGGGTTTATGGGTGAAAAACAATGGCGTAAGAATCATCAGCGGTGGATGTATACATAAAAACTGCGGCTACTTCAGTAACGGCGCTACCATCGAGATACCGTTCTTCAAGAACAGACTAGCCTATGACAGTTTCTCCGTGAGTTTCTTTTTCCGAAGTAAGACGGGAAATAACGGCTTCATGTGGAATGGCTGCCCCGCCACATTCGGTTCGTCGCTGTCCATAGGAGGATATAACAATGCCCTCAAGATTAGGATGAATGACAAAGACTTCGCGGTGTCAACTTCTCCGCTCATTGATACAGACCACTGGCACCATTTCGTGCTGTCGTGGGACGGTCTACTTGCTACCGTCTACATCGACAAAGTACAAACAAACCAGTTCTACTTCCAAGGGGAACTGCAAAGAAGGATTTGTCCACTTGTAATCGGCAGAGCTGCCCATCAAAGTTTCTCCGGCATAATGGACGAGATTTGTCTCTATCGCGGCTCGTTAAGCAAAGCTGCTGTGGACAATATTTACAACCGTCAACTCGGTGCCAGAAATATAGGTAACATTGGGAAATTCGGGTTTCAGTCGCTATGGACGGCGTTTAAAACAGTTTCAGATCCTGCAAAAGTGCTGACGTGTGTGACCTTTGAAAAGGGTTGGGATCACGTGCAGGGAACACGTGGAGTCTACGTGAAGAACGACGGCGTCAAAGTGGTCAGTGGCGACTGCAGACGCCTGAGCTGTGGCTACTTCGACGGACAGTCCTTCCTTTCAGTGCCCTTCTTCAAGGGCAACCTACCGCAAAAGGGTTTCTCTCTAAGTTTCTTCTTCAAGGGAGATATGAGCGGTTCATCTACCACAAGCGCAATGATATCTAATCAATGTGTTAGGCAGAATTACATCACAAGGACAATTGTGGTGACGGGGCGCAGCTCTGTGTTGGTCTCCATGACGAATGGCCGCGTGGACACGACATTGATGAACGGTCAGACGGAGTTCATTGGCGTAAAGGCTTCCGCGAGTTATAATGATTGGCACCATTACGCCCTCACGTGGGATGGACAAGAAGTCAGCGTCTACATCGACTCTGTCTTAATAGAGAACAGACCACCGCTTTCTGGTCATTTAAACAACGCCAAGTGCTCGATGAATATAGGCATTGGCACTGTGAACCGTGAACCGTCATTCTTCCACGGTCGGATGGATGAGGTGTGTTTTCTCAGAGGTGTCTTATCGGGTGAAGACGTGAGAAAGATCAACAACGATCCGTCTTATATCACCCAATTGTGA

Transcript

RPACG06634.1

GGCGACCACTGTCAGCGTCTTAATGTCGGAGACATCGTCCATCGCGTTGAATATATAAGTGAGAAGATACATTTTGTTTGTCGATATTGTTTCGTTGCGAGTTGGCCGAGAAGATGTCTTTGAAGTTGATGGTTTTGATCACGTCGGTTCTAGTGGCGGTGGACGCTACTAAATTTGGCCTCACATTTATGGTTTTGTCAGGAAGCCACATAAAATTGGAGATACGCAACACTACAGTGGCTGTTTACAATACACGCAACCAAACCGTAGAATTGGAGCGTTTGAGACAGTTCATTGTGACGAAGCACAACGAACTACGGGCGACTGTGACCCCGCCGGCCATAAACATGCGTAACATGAAATGGGATACGGAATTGGAGAAGTTTGCAAAAGAAGGGGCCAAGTGTCGATACTTGCTTAAACACCGCCAAAATCGCATGGGTCACGGCGAGAACGTATTTCTGCTACAATCTAATAGGTCACTGGACGACATGATTTTTAATCTAAATAACGGTTTGAACCACTGGTGGGGAGAGAACCGCTACTACAACTTCGCGGACGGTTCATGCAGCGCCAGGACGTGCGGTCATTACACACAGATGGCGTGGGCGATGACGACATTGGTGGGTTGCGCCTGGAAGATGAACTGCCCGTTAAGCTCACCCGGCATAGTCTACAAATACTCTTTCCTGCTTGTCTGCAACTATGAATTCGTGGGAAACCATCGAATTCTCAGCGCAAAAACAGGGACATATTTCCTTGTTCCACCATATATTACTAAAGAAACAAGTTATACGAGAAGTTCGACTCGTCCTACACGACGTACGACAGTCCGCCAGACGACAACGACACAGACAACGACATTGGCATCCACTCTCTCAACGAAGCCACAAACTACGACAAAAACGACACCGACTACTCCTCTGACTATAAGAAAGGGTACAACAACCAAGACGACAACAACGCAGAAGACAACGTTGGCGACTACACCGTCAAAGATTGTCGAGACCACGACGAAGATGACACCCCCGACTCCGACAACTACACGGAGAGTTCGTCCGAGACCCGCTACGTCAACCCGTACAACCAGTCGGTTGATAACTGCGAACAAGCCTTCGCCAATGGACAGGGCATGGGTGACGCCCTTCCCCGTACATATTTCAACAGAAGCAGACCTGATTTCTTGCATCACGTTCGACCATGGTTGGGATCACTTACAGAATTTGAAGGGTTTATGGGTGAAAAACAATGGCGTAAGAATCATCAGCGGTGGATGTATACATAAAAACTGCGGCTACTTCAGTAACGGCGCTACCATCGAGATACCGTTCTTCAAGAACAGACTAGCCTATGACAGTTTCTCCGTGAGTTTCTTTTTCCGAAGTAAGACGGGAAATAACGGCTTCATGTGGAATGGCTGCCCCGCCACATTCGGTTCGTCGCTGTCCATAGGAGGATATAACAATGCCCTCAAGATTAGGATGAATGACAAAGACTTCGCGGTGTCAACTTCTCCGCTCATTGATACAGACCACTGGCACCATTTCGTGCTGTCGTGGGACGGTCTACTTGCTACCGTCTACATCGACAAAGTACAAACAAACCAGTTCTACTTCCAAGGGGAACTGCAAAGAAGGATTTGTCCACTTGTAATCGGCAGAGCTGCCCATCAAAGTTTCTCCGGCATAATGGACGAGATTTGTCTCTATCGCGGCTCGTTAAGCAAAGCTGCTGTGGACAATATTTACAACCGTCAACTCGGTGCCAGAAATATAGGTAACATTGGGAAATTCGGGTTTCAGTCGCTATGGACGGCGTTTAAAACAGTTTCAGATCCTGCAAAAGTGCTGACGTGTGTGACCTTTGAAAAGGGTTGGGATCACGTGCAGGGAACACGTGGAGTCTACGTGAAGAACGACGGCGTCAAAGTGGTCAGTGGCGACTGCAGACGCCTGAGCTGTGGCTACTTCGACGGACAGTCCTTCCTTTCAGTGCCCTTCTTCAAGGGCAACCTACCGCAAAAGGGTTTCTCTCTAAGTTTCTTCTTCAAGGGAGATATGAGCGGTTCATCTACCACAAGCGCAATGATATCTAATCAATGTGTTAGGCAGAATTACATCACAAGGACAATTGTGGTGACGGGGCGCAGCTCTGTGTTGGTCTCCATGACGAATGGCCGCGTGGACACGACATTGATGAACGGTCAGACGGAGTTCATTGGCGTAAAGGCTTCCGCGAGTTATAATGATTGGCACCATTACGCCCTCACGTGGGATGGACAAGAAGTCAGCGTCTACATCGACTCTGTCTTAATAGAGAACAGACCACCGCTTTCTGGTCATTTAAACAACGCCAAGTGCTCGATGAATATAGGCATTGGCACTGTGAACCGTGAACCGTCATTCTTCCACGGTCGGATGGATGAGGTGTGTTTTCTCAGAGGTGTCTTATCGGGTGAAGACGTGAGAAAGATCAACAACGATCCGTCTTATATCACCCAATTGTGATTTGGAAATTATTCTCCACAACATTGGTTTTATATATATATATATATATATATATATATATATATATGTATATATATACATATATATGTGTATATATATATACACCCTCACACATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347	Domain	JmjC domain	Interproscan
IPR041667	Domain	Cupin-like domain 8	Interproscan
IPR050910	Family	JMJD6 family arginine demethylases/lysyl-hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12480	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016706	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0018126	Biological Process	protein hydroxylation	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045905	Biological Process	positive regulation of translational termination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG06634.1 global RNA-seq network