Gene detail

Detailed information of RPACG06079.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG06079.1	UNCONVENTIONAL MYOSIN-XVI	tig00001635	301177	313057	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG06079.1

ACCAAAATAAGCAGTCGCTCCCCAACTTCAATGCAGCTGTATTTCCATTTTTTCAGCGACTAAGTACCGAAAATGAACCCACCCAAAAAGTACGGGCTGCTGCACCTGAAGACTAGCAACACCAACAAAGGTCTCGTGAGGAAACCATCCATATTTGGAAATGACAGTGATGAGGAGGACACACAAGCAGCCGTCAATCAGATGATAAACAGAGAATCAACCAAGACAAAACTGAAGCGACAGACACAGATGCAGATTGAAGATGCTTTAACTCAAGATCCAACTGTGTATGAGTACGACGCAGTCTATGACACATTCCATCCAGATGAACAGAAGAAGAAGTCAAAGAAACCAGAAGACAGAAAGTCCAAGTACATCGGCAGTCTGATGCATGCAGCAGAGGAAAGAAAGAAGGAATATGAGCGGCGGGTGGAGCGCCAGGTGCAGCGGGAGAGGGAGGCGGAGGGCGGGATGTACGGAGACAAGGAGGAGTTTGTGACGGACGCGTACAGACGCAAGATGGCGGAACGACAGGAGGAGGAAGAACGGGAACGGAGACAGGAGCAGATGGAAGCGCTGCTGGACGTGAAGAAACAGAGCAGTCTGACTGGCTTCTACCGCCATCTCTTGAACCAGACGACAGGGGAAGAAGCCATACCTCAAGGCACCACGTCCTCTATTGCACAGTTGAAAGTAAAGCTTCATAGCGAATCAGAGCCTGTTGAGGTAAAGAAGGAAGAGCCAGAAGACGAAGACCGAGACCTTTCGTCCAGTGCCAGCAGCAGTGACAATGACGACATAAAGCAGACGCAACTGCCATCTGGTGGGGTTGGTCAGCATCACAAGAGAGACCAACAACATGGACGTCATCACAGGAAACATGATGACCGAGACGACACGAGAAGGAAACCTGATGATCACGACAGAGATGACACGGGGGACAGTAACAGAAGAAAAACAGAAAGTGGACATACACACAGAGAACACAATGGAAATGATGACACATCATCGTCACGTGACAAAGCTTCAGAAGCAAATGCCTCCGACAAACATGGAGATAAACCACTAGATTCATCAAGCAAACGTACAGAAAAAACGAAATCACAGACATCGAAGTTTGCCAGGCACAATGTGGGGGAATGTGTGGAAGATGCCAAGGCGAGATATTTGGCACGAAAACATGCACTGAAAGCAGCTGTTGTCAAAGAGAACGACTGAGTAAGAAAGCTCAAAGCAGGTTTATTTACGGACTGGGTCAGAATGAAAAAATGTACGATAAGTGTGGGTTATGATATACAAAATAAAAATGTATGAAATGTTGCCAGTTATAATAAGAATGTTTCTTTATACGATTATTACCATGGTTTATAATAAACCCATATTTATATGTCATTACTTGCTTTAGCTTAGATAGTACTAACTTTTGAGCTTAGGCATACGTCCTTATGTTGCTAATGTAGAACACAGAAGCTTGGTGACTGAATATCAGATTTTCACTTAAGGGAACGTCAGCTCGAATCCTGTCCTGCCATGTCAAACCTTGAGCAAGTTTGTCTACTCTGCATTGCTCCAGTTCACTCAGCTGTATGAATCATTACCTGGCTTACATAGTGGTGGATGCTCGTGTGCATAGTCTTTGTTCATGAATTGTATGACAGGATACTTGTTTATGTAAAACTGTACCTTTACTACCAACCTGCGATTGATAACCGCAAGCCGCGGGTTCGTTTCTGCCACTGGTGTGTGATTTCGTAGACGTGATTTGTTTTCGTCAGTTGTTTTAATATGGAGAAGACGTGAGGCATTCTGCAGATTCAAAGTCCTGTGGATTCAGCAACACGCAGAGGAAATCTGATTACCCCAGCCGTACTGATTCCACATGTTGGGAAAACAACTGTTATATGTAAATTGCCCATCACAACGTAGTCACCAGTTCAATTTCGATGTAATGATATATAACACATTACTGACACAGACGTAAAGTTTGTAATATTCAATGAGTCAAACACAAGCTGTTTAATGTTTATTTTCGAGTGTAGAAAAACAACCATCGCAGGGCTGGAACTAGCTGAAACCGAATGGTATTGCACTAACTGTCCGTGAGAAAACTGTGGCAGGCGTGTATTGCAGTTACTGTGTTAAACGTATTCCTTTGCTCTACTCTCGCTTGCCTCCTGCGCAAGCGTATTAAGCATTGCTAATTTGCGGACATGATAATTATAGTTATTAAACATACAATAACACTGATATATTGAGTGTACTTAAAAACGAAGGTGTAATATTAAACTAAGAATATCAAAAATATTAATCAACGCCTCGTGTGAAAAACAAAACAGTAAAGTCGCTGAGTGAGTTATAGTGGACAACGACGAACGATATCTACACATAATTCATCTGTTTACGGGATACTGATTAGCATGTGCATAACACGTTAACGCCAGTATTAATTATGTATACCACCATTACGTAATAAATGTTGTTTGTGGATTAACGTTTTTATGACCAAGTTTCTGGGGGAATTGCTACCGTCATAAGATAATCAACATAACATCACGTTGATTGTATTAATAATATCACACTTTTCGGCTTCTGTTACGGTTGTGAGTCTGCTAAGCTTAACACTTTGTAACTTCTGTTACGGTTGTGAGTCTGCTAAGCTTAACACTTTGTAACTTCTGTTACGGTTGTGAGTCGGCTAAGCTTAACACTTTGTAACTTCTGTTACGGTTGTGAGTCTGCTAAGCTTAACACTTTGTAACTCCTGTTACCGTTGCGAGTCGGCTATGCGTAACTCTTGTTCG

Protein

RPACG06079.1

LLTTFKSRYLTFTNCVNVSMELDHELDTVSDSELAHKQDRASGVTCQLSGVSGDNVHHPRSDSEDTGRSGDILHHDGPTYHRSDDSADDTSNDVIKCVTTIKREPGTSLDADLVMSPCGAPMVSQTSYDMSGSSDVTDVVTSIKSEPDMTSGDELMENEACCVSQDTTETSYDNYEGDRVDESTYHMTQVIVKTEVGDTEEYNCTRRWIMKEDGQLKEVFEVTSRTSDDVKHLQCSVTEPHWQDDADFFPSSADPVLGKAANKRGRRRRKKNCDKSSAGSHPSHVCTLCGKSFASSFNLVVHVRTHDGVKPFTCDTCGKSFSQYINLKGHENTHTGLKPYTCRTCSRSFAHYSTLRAHEQSHTGLKPYTCEKCGKSFGSKNTLKTHERTNTCVKPFSCSTCTRSFLDPALLERHELMHAGAKLFTCNICGRSFAQSSTLHAHERTHSGEKPYVCTVCGRTFNRSTNLRIHERIHTGVKPFTCDVCGKCFTHKCGLKAHETSHTGVKPFTCDSCGKCFVSKSSLNIHERIHKGVRPYVCGTCGKSFTQCNHLKKHERQHTSGQEVTGSLSARSEKHERQHTSDREMTDSLSAHSEKHERQHTSDQEVTDSLSAHSEKHERQHTSDREVTDSLSAHSEKHERQHTSGQEVTDSLSAHSEKHERQHTSDWEVTGSLSAHSEKHERQLTSGQEMTDSLSVRSEKADSIGFGAMSIVTISIDVDQNIMDSVSPVHKQKLCRQVRQQQMKRYHEWVGEPTYSSPERHKKGAKKKGKTVNFEQSVCVFEATERFDNQEVVRCLQEGECSVDTRCPSGATLLHKCCANDNVALAEIMLTYDIEVNSQDDNGSTPLHFACGFDHPELVQLLLMNGADATIVDFDGNYPSDYVGAEFECQPIIEEHLKKLGENDISLEKIRKERHNKMLEDVKALIRDKLDINLPLDNEGTTLLHKACYNGYRDVAKLLLQKEAAVDLKTTCGWTPLHVAAKFSKLKIAKLLLKYGANPSEPNEDEKSPLALAVTSEMMEVLLKAQQKKFVSQMSQDEDYEDEASAPNTLQLRHEAPSKADQLFEAKSRFGDLQDEDSDSDLDDINDDAMIYEDVLSFADRINPLQSPAMIERSLQPPPLLSTQATDDLVQLPELTEQVMRDHLYQRYTQDKIYTPVIGLIYWTQLQVAQCTDLDCYSRSLLQAAPGTDLDCYSMSLLQAAPGTGLDCYSRSLLQAAPDTDLDCYSRSLLQAAPDTDLDCYSRSLLQGALGTDLDCYSRSLLQSAPGTDLDCYSRLLLQAAPGTDLDCYSRSLLQAAPGTDLDCYSRSLLQAAPGTELDCYSRSLLQVVPSTDLDCYSRSLLQVTAPGTDLDCYSRSLLQAAPGTDLDCYSRSLLQAAPGTELDCYARLLLQTGVGDILIAVNPLKRLPIFTKQVSSSYQECAPGHVMPPHVYGVAERAYRALITEQKSQCCIICGESGSGKTETSKYFIQHLVSITAHTKCSRLCRQIKQANPLLEAFGNARTLRNDNSSRFGKYIELLFGADGNLHGARINEYLLEKSRVVFQADRECNYHIFQLLLTGLSPDELRTYSLEAAAKHRYLKSSRDNISDHCREMFTHLKSCFKFVDFTDQGVAGRCGAQRGAAGRSGAQRGAAGRSGAQDINQLFTMLSAVINIGDINFIPTGNNDNAKITNIRQLQKVADMLQVDQSDLMTALVSEIFITRGETIVRKRTVSQAVDCRNGLAKSLYGRLFSWVVNNINQKIKPSDDSGPLLEIGVLDIFGFEDFGRNSFEQMCINLANEQLQQYFNKYVFQMERDECVSDNVPSLTVEPKNNEHAVSLFLGPIGILSILDEESNFPKATDYTLATKLHSKLGKQFSDIYLTPKDQGISFGVMHYAGMVTYDLKDMLDKNRDAFPKSFSYLLRSSENVLVTEMYQAQVTRTGSIAPSHRQTRNRPRSRAASNRRQSYILDFKSARDLFRTSKMATAKKEEKKSSQRVGVMFKCTPTVAFHFKNSLQEMMGKMKAASPHFIRCIKPNMGQRSNDFDQTFVDAQLRYTGIFETVRIRREGYAMRITFDDFLSRYDIFTLCGGSLKESSMSTKEKCVQILKSLKLTDYQSHVMDDYFSNHLNISKECFFLLACHMTCQTCDIGGHRVT

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001609	Domain	Myosin head, motor domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR052838	Family	Unconventional myosin-XVI	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47335	UNCONVENTIONAL MYOSIN-XVI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003774	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0014065	Biological Process	obsolete phosphatidylinositol 3-kinase signaling	Interproscan
GO:0016459	Cellular Component	myosin complex	Interproscan
GO:0019903	Molecular Function	protein phosphatase binding	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048812	Biological Process	neuron projection morphogenesis	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:2000134	Biological Process	negative regulation of G1/S transition of mitotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG06079.1 global RNA-seq network