Gene detail

Detailed information of RPACG05429.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG05429.1	NETRIN RECEPTOR UNC5	tig00001431	28656	36838	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG05429.1

AAACGATAAGTGGGGATGTCTATCAATGTATTGACGCAGATTTAGCGGCATATATAGGCCAACCTTTCCATTTATGACGGTTACTGCAGGATTGTAAGGATACGATAGAAGGTACAATCGTCAGGCATAACGCGAATGTTACGCAACCGTGGGACAGGGTGACAGTTGTAATACGTTCGCAAGATGGGGCAGTTTTTGTCATCTCTTTTGGATGGTGAAAAAGTAGATTCTGAGCCGACCTCTCGACGACATCCAAAAGTTGTTCAGCAAGTGGATCCTGGATATTGGAGACCAGAAGGATTGCATTATCCTTCGACACGGAACTCCTTGAATACTGCCTACCAGAGAGATCTGTCATACACTCCGTCCACTTCGTCCAGCACGTCCAGCACGTCCACTAGGTATTTGAATACTGTTCACAAAAAAGATTTGAGAGTTGAAGTGAAGCGAGATTCGTGTCGGACAGCGTCAGTCCACTGGACTCTTGTGCAAGACTCACAAGTGGACATCAGCATCGCAAGAGTGACTGGGGGAACCAGAACAGAAACACCCCAAAAATATCGTAGGCCAGCCACAGAGAGGGCGTTTCGCATACCGACACAACTGATGCGAGGAAAAGAGTACAAAGTTATTGTACGAGGAGTGACTACGCATGCACAAGACACAACCTCATTCCGTGCAGTGTTTACGCCAGCCGAGCTGCAGACATTACATGAGATGGCAATGAGACATGTGACTCGTGGAAGAGGAAACAAGTTCCAATACTGCAACGTCTTCTACAGGAACAAGTTGTTTAGCTACTACACTGAATGTCAGCGCAACAACAACATCATGACCGTGTACATGAAGGACAACAACGGCGACCCAGCGTCCATCGTCAATGGTCAAATCAAAGGACTATTCTTTGCCACAAGCGTTGATCCACAAACTGGTCAGCCCCCAACGTGGTCATTCTTCGGGCCCAGAAGGATCAGCCTTCCGGCCACGGAAATGCTGACGTGGAATTCCAATCTCTATTTTGCTGACTTCTACTGCAACGATAAAGCGCACTACGTGACAGTCGTACTGACCCGTCCAGGTTCACAGACTGACCGCTTCTGTAAGGAGAACCTCATCAAACTGGACATTAAGCGTAACAACTTTCTATGGAGAAATAATCAGGTGCATTACTCAAAGAAGGTGTGGGTGGAAGTCTTCTTTACGGAGGACGTTGACTTGTCCAGTCCTTTATGTTCGTTTAGCACAGTCGAGGGCAGGGGAACGTCAAAACCCGGGGGTCTACCGAAGAACCCTACCTGTGGAAAGTGTAATCTGCCCTACCCTCCACTTACCCCAGCACAGCCAGCTCTGTACAGAGAGAACTCATGCACAGCCTTTGCAGATTGGTCACAGTGATGTAACTACCTGACCTGGTAATTTCATATTCAATGAAGCATTCTTATAAAGGGCACAACCATATTCTGTGCAGGTAAATTTCAGTGAATATTGCAGAGGACACTATTTCTATAACTCACCAGTGAAAGAATCCAGATGGTGCATTCTGGCCTCTGGGGCCGACAGTTCAACATACATGGTCAACGAGTGAACGGTTTAAAAAAAACATCATAACAATGTTTGTGAAATGATCTCCAGATTGATTATCACTATATCCAGGTGGTGCTTCACTCCCGGGGGAATTTGTTCATTCAAACACCATCTGAACTTCTCTCGGAAGTATTCAGCTACCCTGCAACTACTACACAAATACTATTTCTATCCATCAGTGTCTAAAACGAGATGCTCATTCACATTAATATACAAATGTACTGCGCAGTGACAAAGAACTTTGAATGTCAAACTTGCAGTTGAGAGGTTTCAGCCTCTAAGATGGCTGCTATTTTTAACCTTGGGCAAGTTTCTTTGCTCCACTGTGCTCCACTTCACCCTGTTGCATGTGTATTTGCCAACAGACAGTGGTAGATTTGTGTAGTAATTACAGCATGGCTGCCACTCGACGAAGTTAAGACTCATGAAGTGATGTACATAAAATTATACTTTGTTACTATTGTAAATTATGTCATAACTCGTCATGACTATATGTATACTCTGCTGTTTAATTATCGCATCGGTAATGGTGTTTTTTTTCTTCAGAACATTAAAAGTGTGACTGGCTATGTAATACTATGGGTGAAAGGATTCAATAAACATAAACGAGTCAGTTTTTAATGAGTTAGCAAATAAGATACAGCGTAGTAATTATTATCTTGTTGTAATAACTTGCATTTTTTTGTTTACGTAAAAGCGAGTTGGGAATATATAGACTTTATGTCAAGAATATGGGTGTATGTAATCCAATCAATAAACAATTAAGGTTTTCAATTTCAAACTTGTTTCACTTATTATTAACGAAAATTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF00791	ZU5	ZU5 domain	Family	Interproscan
PF17217	UPA	UPA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR000906	Domain	ZU5 domain	Interproscan
IPR006212	Repeat	Furin-like repeat	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR033772	Domain	UPA domain	Interproscan
IPR037936	Family	Netrin receptor UNC5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12582	NETRIN RECEPTOR UNC5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005042	Molecular Function	netrin receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038007	Biological Process	netrin-activated signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG05429.1 global RNA-seq network