Gene detail

Detailed information of RPACG05088.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG05088.1	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	tig00001344	1671985	1681937	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG05088.1

GACAGCGTTCAACGGACCAGAACGTCGTATACAAGCACGTCGACTGGTTTATGCCACTCTCGAATCGCACTGTTACGACAACGGACGTTATTATTTTCGCTTAAAAGTCGTCCGTGGCAGCGCACACTGCGTTTGTGATTATTGGAAGTTTTGTGGACCAGGTTCTCATAACAGTTCAACCGAAACGAACGGGGCTTAGTGTTGTAGTACAGGCGTCCGTGACAGTGTCAGTGAACGGATACTACGACACGGCGACAGCAGGCGTCGAACAATGAACGACTAGTCAACGATAGTTTGGTGTATTCTACAAGAACAACGAGAGTTGGATGTTACACTTCTTGCGAACACAACCCGTGATAAATTGGAGTGAAATCAAACGGCTTTGACTGCGAACTGTTTTGCCGTCAACCAGAGCAGTGGCACTGTTGAACACTGGATTTATGTTGACATAACTCCTTAAGCAATGGAGTGTCCCGTGTGCTTTGACGTTTACAAGCGGCCGTTATTACTGCCTGGATGTGGTCACACTATTTGCCATGCATGCGCAGAGATCCTCATATCTGATACAAATTTCCTGCGTTGTCCAGAGTGTCGACTTGTGTACCAACTGCGCCAGGGAATCAAAAGTTTACCGCGCAATGTTGCGCTCCAGCGCGCGATTGACGAGCATTCTCGCAGTACAAGCTTTGCGAACTTGCGCTGTGACCAGCATCCAGATGACGCAGCATCGCTCTACTGCAAGACTTGTGAGAAGTCGATTTGTCTCAAATGTTTCTTCTCAGGGAAGGGTCAGTCAGTTCACAATGACCACGTTGTCGACACATCAGAAGACGCCTTTTCACAGGAAATGCGACTGTTGGATGATCTAAAATCAAGAACTGGGGAGAGCCGAGATAAAGAGATGGAATACATTTCAGAACTGGAAGAGACGGAGCGTGCTCTGTCGGCTTTGCAAGCCGACAAGTTGGCAATGATTGAGAAACACAAAAATGAAATGCTGTCCATTGTCAAAGCAACAGCTGCCAAACTCAAATTCACACTCAACGGCAGTGTGGCTCGTGACCGAGAATACCTGCAGATGGCGCTGACATCAGCAAAGGAGAGACTGGTTGACATGGACGAGGTCTTGTCACATGTTGAAAGTGTGTTCAGGAGAACTGGAAACGAACCCGTCAGCATCAATGCGCTCAAGCAAGCAAAACAGAAACTCGACACCCTCAGCCAGCACGAAGATGCAGAAAGGCCAGACCAAGATTCGTTCATGAAAGTTGCCTTCTTTGACACAGACCTCAAGTCTTGTCTACAAGACCAACAAAGGGCTCTTTCTTACCAAACAGAAGCACCAAAGGAGCCTCGCATCTCCGATAAGCAGTGCATCATCTCAGACAGCAGCGCCTACATCGAGTTGTCGTACAACGAGACGGTGCGAGCCAAGCAGATGATGCTGCACTACCAAGAGTCTCTCTATAAAGGTCTCTCGGAGAAAGACTGGCAAAAGGCAGAGGTTGTTGAGCGGAGCCATGGTAGGGGGCACTGTGTGCTTCGTGATCTTCAACCCGGAACCATGTACAGGATGTACGCAGTTGGGATGAACGATTTTGGCGAGAGTCCTCACTCGAAGGAGTTGTGGTTCCGCACGGTCGATGGAGAGATCGAGAAGCGAATATCATGACATTCCTGCTATGTCTCGACAGTAAAAACAGACTTAAACAGTGTAATCGTTACAGAGAAATCATATTTTGTGATTGTCTCATTGAATTAACGCTTGGTGACTAGTAATAACATAAATATGATGATGTATATAAAAAGGTGGATATTTACTGCAATCTGTTGATGGGTTGAACATATATATATATATATATATATATACATACATACAAATACGTTGGTACTGAATACGCATGTGCCATAATTTAACAAAGAAATTTAGCTATGCATTTATTTAGGGCGGTATGTTTTATATGTGTCCTCTTTTAACTTCAAGTGGCTCGACAAATCCCTGTGAATAGTCATATAATGGGATATTTTTATATATGAGATTTTAGTCTTGCAGCTCTTGACGTCAAACATGACTTGTACATATTCTTGGGAAATGTAAATGCCTGATTTTATTAAGTTCTTTTTTATGAAATAGCCTTTTAACATTAAAAATGTATATTTGTAACAAGTTTGGTGTGTTCTTTTACAAAATATCCTTTTAATGATTTGTATATCACCCTCGTGTTTCTCTGGTGTAATGCTTACTGGTTTGGTAGAAGTAATGCTTTAGTTACAAATATCCACCACTGTCTATGCCCAGGGACTCGGCCATAGAGCTGAGATCCGAGTTACTCTCCCAAGGTTCGACACAGCAGTGCGGATTTCAAACTGGGATTTTCTCACACGAGAATGCAAAGTTCTCACCACTGCACTCACATCACATGGAATTCGTTACAATGTGTGCTAACTTTGGCTCATCGACCATTTGCTGGTCATGTGATTAGCCGTAGACCGGACAGATGCACGAGTTACTTTGCAATGTTGCATGCGAACATGTACAAACTGCAGCAATATGGAACGTAATCAAAATGTCTGCCCAGCAAGATATCATTATTATTATTACAACACTAGAAAAACAATTACGCCCCATCATTGTAACTTCAGCCTTAGCCTTTATGAACGTTGAGCGTCGACAAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF05192	MutS_III	MutS domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG05088.1 global RNA-seq network