Gene detail

Detailed information of RPACG05026.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG05026.1	UNCHARACTERIZED	tig00001344	210003	223429	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG05026.1

TTAACGATGGCTTCCCACTTAGCTAGTGGGAGGATTAATCTTGCAGTTTTACGTGAATCGTATCGGCGTGAATTGTTAGAATGTCTGGACAGATGCACTGGAAGTAAGGCGCTGGTGTGGGACGATGCTCTAACTGGTCCATTCAGTCTCATTGCAGAGTATTCTCTGCTGAAGGAACATGGGGCAGACAAGATGTACCCTCTACGACCAGGGCAACTCCCAAGAAACAATGTTGCAAATATCATCTTTATCTGTCGCCCCAAGCTGGATCTGATGGACAGTGTTGCTCAGAATGTGCACAGAGAGGAAGAAACAACAGGGTGCGTGAAGGAGTTCCACATTTTCTTTGTGCCAAGAAAAAGTATGCTGTGTGAACATAAACTTAAGGAGCTTGGAGTCCATGGGTGCTTCACAAACATAGATGAATATTGCCTGAATTTGATCCCATTTGACTACGACCTTCTCTCAATGGAGATGGAATCATCATTTAAGGAGTGTTATCTACAAAATGATGAGACGTCGTTGTTCTACACGGTACAAGCTCTCATGACACTACAAACCCTGTATGGTGTCATACCCAACATCTATGGCAAGGGTGAATTAGCAAAGCACGTTGTTGACATGATGCTTCGAATGCGGCGAGAGACAGTCAGTACAGAGCAACAGATTACTCCGCAAATTGACAATTTACTCATTCTTGACCGCATGGTTGACCCCTTGACCCCCCTGTTGTCACAGCTCACATATGAAGGCCTCATTGATGAGCTGTTTGGTATACAAAACACAATGGTGAAATTGCCACCAGAGAATCACACATCTAGTGATAGTTCAGGTGGTGGGCCACAAGAGGGCAGCAGTGAGATGAAGAAGTTGACATTGAATTCTGGAGAGCAGCTGTACGCCGAGTTACGTGATAAAAACTTCAGCGCAGTTGGGGCTCTGCTGAGTCGAAAAGCAAAGTTGATTTCTGCACAGTTTGACGAGAGACATGCAGCAAAGACTGTCGGGGAAATCAAGCAGTTCGTGTCAAAGTTGCCCCACATGCAAGCCGCCCGAACATCCTTGTCAACGCATATATCAATTGCACAGATGGTTAAAGAACTGAGTGGCACAGATGACTTCCTGGAAGCCCTGCACACACAACAAGATTTCTTCAAAGGTCTGGATACCGATAAAGTCAATCCTTACATAGAAGATTGCATAGCAAGACAGGAGCCTATTGTGAAGGTACTGCGACTCATGTGTACACAGTGTATGTGTAACAATGGCTTCCGCCAGAAACTGCTAGACTACTACAAGAGAGAGATTATTCAGACGTACGGCTATGAGCACATGATCACCATCCACAACCTGGAGGCTGTGAGACTACTGAAGACACAGGAAGGCAACCGCAGCTACCCCAACATCCGTAAGACACTGCGACTGTTTGTGGAGGAGGTCAAGGAACAGAACCCGAGTGACATTGCGTACGTGTACAGTGGGTACGCGCCCCTCAGTGTGCGTCTGGCCCAGTTCCTCCACCGGCCAGGGTGGAGGTGTATCACGGAGGTTCTCTCCCTCCTTCCAGGGCCCACCATAGAGGAGGTGCAACAGATCCCCATCGGACTACGGAAGAGAAAGAACTCTGTCACATCCATCCAATCAGGCACAGTTGAACCCAAAGTGACCCTTGTCTTGTTCCTCGGTGGCGTCACTTATGCAGAGATTTCGGCACTACGCTTCTTGTCACAGCTAGAGGATGCACCTGCAGAGTATCTTGTTGCAACAACAAAACTCATCAACGGGAACAACTGGATCGAGTCCGTCATGGATACACTGACACCAAAGCCAATGAATCCATTCTGAACATTATTGTGATTGAAACTAAAGCCACCTCCTCAAGCTTGTTACATCTGCTGAACGTCATCAGTTCATTTTTATGTTAGATTGAATGTACATCAACTTGCCTGCTTGGTGGTATGCGCAGACCTTATCGGTGACATCAACATACAAACTATTAACTTATTTCGTGTTTGCCCAACTTCAGCTTGATGACTCAACACTTGGAATTTCATGAGGGCATGTGATGTAATGATGCATGTGATGTAATGATGCATGTGATGTAATGATGCATGTGAGTATGTGATGTAATGATGCATGTGATGTAATGATGCATGCGAGTATGTGATGTAATGATGCACGTGAATATGTGATGTAATGATGCATGTGAGTATGTGATGTAAAGATGCATGTGAGTATGTGATGTAATGATGCATGTGATGTAATGATGCATGTGAGTATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15912	VIR_N	Virilizer, N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR026736	Family	Protein virilizer	Interproscan
IPR031801	Domain	Virilizer, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23185	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0036396	Cellular Component	RNA N6-methyladenosine methyltransferase complex	Interproscan
GO:0080009	Biological Process	obsolete mRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG05026.1 global RNA-seq network