Gene detail

Detailed information of RPACG04799.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG04799.1	CRUMBS FAMILY MEMBER	tig00001277	576368	578545	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG04799.1

TGACATGGCAGGCTACACTAATTGTTGGTGACATTTGCATGACAGTGACATGGCAGGCTACACTAATTGTTGGTGACATTTGCATGACAGTGACATTGCAGGGGACACTAACTGTTGGTGACAATTGCATGACAGTGACATGTCAGGGGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGTGACACTAACTGGTGGTGACAGTTGCATGACAGTGACATGGCAGGGGACATTAACTGTTGGTGACAGTTGCATGACAGTGACATGTCAGGGGACACTAACTGGTGGTGACAGTTGCATGACAGTGACATGCCAGGTGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGGGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGTCAGGGGACACTAACTGGTGGTGACAGTTGCATGACAGTGACATGTCAGGTGACACTAACTGGTGGTGACAGTTGCATGACAGTGGCATGCCAGGTGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGTGACACTAACTGTTGGTGACAGTTGCATGATAGTGACATGTCAGGGGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGTGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGTGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGCCAGGGGACACTAACTGTTGGTGACAGTTGCATGATAGTGACATGTCAGGGGACACTAACTGTTGGTGACAGTTGCATGACAGTGACATGTCAGGGGACACTAACTGTTGGTGACAGTTGTATGACAGTGACATGTCAGGGGACACTAACTGGTGGTTCCAGTTGTATGGCAGGGTGATGTTCGTTTAGCAGTCATTGGTGCATTTATTTCGGCTGCTGTTGATTGAATCTCAACAAACACTGATGTTGTATCAGAAAACATCAGGACACGTCACATAGAGAGCTACAGGCTCACAGAATGAGTGCGTCACAGAGTGTGTCTCACATAGAGAGTAGTCACAGTGACCCAGTCATCACAGTGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGGCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGACGGTGACACAATCGTCATGGTGCTACTGGTGACAGTGAGCCAGTTGTCACGATGCTGCTGGTGATGACATTTGAATGGAGACAGACACTCACTCCGCATGTGTCATCCTTCCTTATAAAGGATTCAATTGTTGTAGCCTGGGTTTGCTAGTTGTAAACTAGGTGTAATAAGTTACATGTTAGTGTAATTAGTTGTGTATTGGTGTCATTACATCTTGGCGTAATCAGTTACCTGTAATCCATTGTGTGGGTGGGTGTGATATATGTTACACACAGCGTCAGTTGTTTCAGGTTGGTGTAACAAATTACATCTTGTGAAAGGCGTACCTTCGCAAATGTGGTCAGCAGTTTCTAATTATTAATTGCATGTATTAATCAATATGACCCAAGGTCAGGGGTCACGATCTGTCATTATTACACACCTGTGTATAGGTGCCACTAGTCAAGGAGTTGACAGGTGAACTTTGTCAAGATGCTTAAGACATCTGTGTGTTCATGCTTGCGCAATACTCAATGTAGTAATCTATGTAAACATAACTTATTATCGCTGTTTGTACAAATAAACCTGT

Protein

RPACG04799.1

MLMNFDPTKHTLLQCDALNYGLDAVLSYNMEMGPSVGFASRTLDAIRKNLAYRKNTSQSSVLFRHRGLSKNAVDGKRDGVFRRNSCTQTSNDNPAWWQVDLAAVYVVKGVSISPRKDCSSCDFIKSLTFKSIQHERLKGNGLRFPFTATTGTYVYKEKADIPTSYQASDNYATARWPTEESRLRKDHFAIVDLSDMRGLKVTVFDLPSRLRQARTCTKRTLKFRRGRTRHIICDVGTVGRYVRLTMKRNRRKLSVCEVEVYERTVAVSGSCKSYPCKNGGTCKVDGSSFTCICKINTTGKKCERKYHYLTCVKMDVSMNGLEVALSSVSGPYSPVLCSKEHLTFVRDESKNIYCDAGITGRYVVTSLPGINKVLYICEVEVYGIPAGCNATFDENKNTYATASGQQIVSANSVEECKQSCVDSKACVGFDYNGITSSRWRGCWVYTNATSMTTTTTMNGVDHYRLRSCHAHFDPCSPNPCENDALCKTDDKSAFKCSCKSDYYGTKCSVFDPCRGITCENDGVCRHHGLSYKCICKPDYFGRFCEEYNLCPRLKCLNGGTCKMDGNKRVCSCPHLFRGDNCQRPHDVISPYWFTSSAFNPCGSNPCKNGGMCSKHGQDYRCNCIRDYIGKNCGTYNPCKRNPCQHDSNCSVIGHDYNCVCKKYYYGVHCQSYAPCLQNPCENNAKCIESDDGWECQCRPDYYGTTCKHYRPCKQDTCKNGGTCKDEETSYSCKCKTENFGTHCENRNSCKHNPCKNNGTCHVDKSSYVCECLSFFHGKQCEEFDPCRENPCKHGVCRKGVSSFICDCDQYYIGKTCKSHAPCQNNPCKNKAICTARKHGYKCDCKEDYYGTLCDVFNPCKTNPCGKGGKCRPDGMSYLCECAEYHYGLQCQALAPCRKKPCKHDGICTANEKEYTCTCAVYYHGENCEKYDPCEPNRCKNGATCITEITTYSCKCPPDYYGHTCSRYDPCQKHKCLNDGICEKGDGVFECKCRKYYFGDRCEKFDPCGDKPCKHGGVCATNELDYTCTCGPDYQGKNCEIYDPCQRKPCNNNGDCKVIPGNTFQCNCNIGYVGTYCDEYKPCEPNPCKHGGTCTTELQSYRCACREFYFGKTCDEYDPCRQKPCNNGRCQAGISSYECVCPKDYYGEKCEMFDPCENSPCKNGNCIKTEHSFKCDCKTDYYGEICTEYDPCRKHRCKNKGRCMRYENTFECICLPFYYGKTCEVFAPCRSNPCKNGGECAKHHKRFTCHCKKDYTGETCAGKKMHCRYTFVTSTQKKHYNAYQQVQHSVVIYNYYVGTRCQVYNPCKNNPCLNSGICHKNPMPYACSCKANYHGKHCEVYDPCLTNPCKNRSTCSSNGNSFKCACRNHFRGDVCDDFNPCKYSMCKNGGKCTIAEQTYNCKCKMPFSGPHCEGIIDKCSRRSKPCKVNTCQNSGVCTTVNGTEQCACTDNFKGPLCEEFDPCRETPCENGGDCVPYGTAYNLFDPCRQKLCQHGGTCTQLPNSFNCTCAKNYYGRSCEVFDPCQGKPCHKGSCSNVSNTFKCTCEKHYYGLRCDEFKPCKNDPCQNGATCKVLGKSYSCECPEFYYGRLCQDFRPCENNPCLNNGTCRVDRMANGYMCHCPEDYAGTTCQVFNPCRPNPCQNDGACQPTDTSFICTCIDDYYGSRCLEFDPCKNKPCQNGAKCKIVNSTYECECPTDTYGRDCEELDPCRKNPCKNEGICKNLGKGFECSCTDYHFGEKCTEFNPCKEEPCKNGGTCTIYEDTYKCKCKPDWYGKECKELDPCRLAPCKHGGTCHVQGYQFRCQCKQGYHGATCKKFDPCRNVNCSSNGNCTFHVHANNTWDTVCQCNYDYEGETCSVHIDRCFSFGLPCISACDGLKDGKYSWCGDCHKFAVCSHGQISYQECLNKTDWGYNVETHTCQYQSPNCIRCAVNPALFVILIATALLFAVSDDVCQKQSCLNGGTCVPVGGHYDKMHRYLAIRKCECLPNFTGDSCEKECVWSFKAIRYKHMQGGLYKRVANLLECQKTCMEKPENCTGVDYFPGTCFLHYEQRPLLPASGSIFYKAMPCVPPRPAVANKGGMGEEVNRS

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00754	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR006585	Domain	Fucolectin tachylectin-4 pentraxin-1	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG04799.1 global RNA-seq network