Gene detail

Detailed information of RPACG03870.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG03870.1	IRE1-RELATED	tig00001010	2349036	2359503	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG03870.1

ATCTTGGCGCGCAAGCAAAAAGCAGGAACAAATCACCATGCAGCAATACCACCAGTTTTTTTTACTTTGCTAAGTAATATACCATAAGTTATAGGAAATGCTTCTGTGTAACGAAATGTTTTTTCTGCATAAGTATTAATATAACAAATCGTGTCATCATTGGGCGATAACAGGGTAATTCGCCGCCGTTGCAAAACATCGGGGAAGTGACAAACGTCGGTTTTCCTGACGACAACACCTAGCAACTAAAATAAAAGAGCTTTTATCTTCTAGCTAGAATCAACACAATCACATGAAAATGAAGATTGCAGTGGAGGGATGTTGCCATGGAGAGCTGGACAAGATCTATGAGACTCTTGACTTTCTGCAACAGAGCCAGAACATCAAGATTGACTTGTTGCTCATCTGTGGCGACTTCCAGTCTGTACGCAACAAGTCCGACCTACAGGCAATGGCAGTGCCACCCAAGTATCAGAAGATGAACACTTTCTACAAATACTATTCGGGTGAAAAGAAGGCTCCCGTTTTGACAATCTTCATTGGTGGCAATCATGAAGCATCAAATTACTTGCAGGAGCTGCCATATGGGGGGTGGGTTGCCCCAAACATCTACTACATGGGCTATGCCAATGTTCTCCGGTTTGGTGGATTAAGAATAGGGGGCTTATCTGGAATCTACAAGGATAAGGATTATCATAGAGGACACTTTGAACGGCCTCCATACACTGAAAGTTCAAAGAGATCGGTGTACCATGTTCGCAATCTGGAAGCATTCCGACTGAAACAGCTGCGACGGCCAATCGACATCTTCCTGTCACATGACTGGCCACGCGGCATCTATCACTACGGCAACACAGAGGCCCTGTTGCGTCGCAAACAGTTCTTCCGGAGTGAAGTGGCTGATGGGAGTCTCGGCAGTCCGGTGGCAGAGGAGCTTCTCCAGCACCTTCAGCCGGAGTATTGGTTCTCCGCACACCTGCACGTAAAGTTTGCCGCACTCGTGCAGCATAAGTCCACCGCTGGGCCACCAAAAACTACAAGATTTCTTGCCCTGGACAAATGTTTACCGAGGAGAGAATTCCTGCAGGTGTTTGACATTGAAGCAAAGAGTGACAAGCTGGACTTGTGTCTGGACCCGGAATGGCTTGCCATTCTCAAGTCTACAAACCATCTGCTGGGTCTGTCTTATGCCAACAACTACATGCCAGGCATTGGATCTGATACCAGGTACGACTTCCATGCGAACGACGACGACATCCAAGCCATCGAAGCAGACTTTGCCGCTGACTTCCGCATCCCAGAGAACTTCAAACGGTCTGCACCGATTCATGACGCGACGCAAGACTGCAAACGACAAAGCGCTTCACCACCACGCATCTATGTAAATCCACAAACGACATTGTTGTGTGACATGCTCGAGTTGACAGATCCGTTTGCAAGTTTCACTGGTACACAGTCCACCTTGGTCGAGGACATGACTGAGAACAGCATGGACAACAAGGATGTATCCTCTGAAGATGAAGATTTTATTGACACAACTATGGAATCAAGCGTAAACACTACATTAGACACATGTAACCCAGACGAGATCTCGCTCGATGACCTTGACGATGACGATAACGAAAGTGACAAAAAAGATGATGACGCCAAGAAAGAGGAGATTGAGTCACCGCTAGGTGTAACCAAAGGGGTAAGTGCTGAAGACGGAAAGATTTTATTGTCCGCAGAACCTGCAGACATGGTCGTGGATGCAGGCACGGCGTCTCCGTTACCGAAAAATGGAGACAACATGGTTGTCAGTCCAAAAAAACGGCATTCCGGCCCCATCGAAGACGCGACAGCTGCAGCGACATCCACACCAAACACGGCTAGTGCGAAGAAGTTTAAGCGAAGGAACCAGTCTTTCTACAGTACTCCAGCTAACGATGACTAGAAGGCAGGTTTTACTCATCTATCGGTCTACAATGTTGAAAAGCAGAAAAGCTGGACAATTTGAGTAATTTTAGCCAGCGTGGCCACTGGACAATGGTTTTAACATGTTATGCAGCTAGGTTTGTAACTAGTTTTGTACGTGTGGCTATGCTGGGTGTTGGCTCGTGATACATATCGTAATATGGTATGCCCTTCTCAGCGGCAACTTTGCATTTTAGGAAAACTGCAGTTGGATCAAATGTGATCAAATTACATTTTATGGAATGCTAGATGCGACTATCTGAAAATGCGTGAGCACAGGTACACACGAATGGTTGGGTGACACTTCGCAGCGATTGACGATCTTTGTGACTTGCATGAGTAATGTAGAAACATGTGGTAGACATGTATTTGGTTAAAATGTAATGTAATGTTTTATTTTGTCATCAGTTAGCAGTTTTATCAAGGTTTCACAAAATCTAATTACTCAGATTGTATTGGTCTCACATCTGCAAATATATTTTCTCGTGAGAAATTTTTGTAGTCACAAAACAACAAAAACGATATCTGTAACGTAACGTGTATAGTCAAATTCGTAAGTGTCCATGTTTCTGATAGTGCAAAAAGATTTATCCCCCAACACTTGCTTTGAGTAATGAAGTATGTATCAAGTGATATATGTATATATATATATATATGAATGTGTGGGATATGGAGTTATTATCTGTGGGACAGAAGTTCGGTCCAGTGTTACATTAATTACTGCTCCAGGTCCTGCTTTGTATCCGAGTATCTCTATGTATTCTGAATGGCAGCTGGGGAGATATTTTAACAGATTTTATGAAGGATCCTACCATGTCATGTACACTCTTTATACAGGACATGCTGTTAACTGGCTGCATGTTATATGAGATCAGTATGCAAACTGCATGTAATGTGGTCTGCATAGGCTGAAATATAAGGTCAAGTTATTGAAAATGGAAACACGTCTGAAATGGTCATTAAATTATCTTACTTTATGATTGTACAATAAAACAGTGTGCAGAAGTCTGGAGAAAAAACGTGTACTTTACAAAGGTCCATTTAATTTATGTGTAGGTAAATAACATAGTTTGCAAGCATTTATACTTTTGTGTTGTATTTATCATACACTTTTAAATATGATCTATTCTTCTTTCCACATTGACATAGGAATATTAGTTATGGAAAACATAGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF06479	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR010513	Domain	KEN domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034464	Domain	PARP-10, RNA recognition motif 1 and 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038357	Homologous_superfamily	KEN domain superfamily	Interproscan
IPR045133	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954	IRE1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0070059	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG03870.1 global RNA-seq network