Gene detail

Detailed information of RPACG03577.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG03577.1	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	tig00000936	1315044	1371895	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG03577.1

ATGCATCGACAGTTGGCAATAGTTTCCTTGCGAGATCCGCTCACAGACCCTCTCGACCCGAAGCCAGCAGGCATGGAGGTGAACAACCACTTCGGCCCACATCTACCCCATAAAGACTTGCCGACACCGGAGCAGCTGATGTACCTGCACCACACCGTGCCTGTCGGGGTGAACATCTCGGAGGCCGACCTGCAGGCTCAGATACTCAACATCGAGAAGTACTACCGCATTCAGGAGGAGTCCCTCGTACAGCAGTTCGAGTCGCAGCGCCGTCTGCTGGCCACCGAGCACCAGGTGAAGATGCAGGAACAGATCAAGTTGCTGATGCTACAGAAGCAGCAGCAGGAGCTGTACGAGCACCAGCAGAAGCTGCAAGAGCAACGACTGCAGCAGGAGAGGATGGAGAAGGAGAAACTTGAGCAGATCAAACACAAGAACAAGGATGAAGAGAGTGCTGTTGCGTCAACGGAAGTGAAACTGAAACTGCGAGAATGTCTACTGAACAAGGGTCAGCGCGATCCGGGCCTACTCAAGAATTCACCTCCAGACTACAGGCAATGGGCTACCCACCACAGCTCCCTGGAGCAGCACTCTCCCCCCACGAACGGGCGGTCGCCACCCCTGAGGGCTGCCCATCTATTGGGGCGCTTTGAGGATCAGTACCCCCTCCGAAAGACAGTCTCTGAGCCGAACCTTAAGATGCGCTCTAGAATCTCGCTGCGACAGAAGGTGATGCACCGTAGCCCCCTGGTGTTGCGCCGTGACTTGATGGCCAAGAAAATGATGGTCTCCACCTTAGACACAAACAGCCCCGACTCGAGCCCCAGCTCCCCACACAGCGGCTCCCAGGGATCGCAGGGATCAGTGGGCGGGGAAGTACACACGCCCCAGAAGGAGAGCCAGGATGGCGCCACGACCTTCCCGCTGCAGATGATGTCCAAGATGGTCATCAACCAGAGCATGCCTAACATCTCCATCGGTCAGCCTCGGGACACGTCTGCTGCAGAGGCAAATGTGGCGACCAACTTATCAGCGAGTGCTTCAGAGGCAGAGTTACGAGCTCGCGCCGCAGCACAACATGGACTGCCACTGACACAACACATGCTGTCTGGCACAATACCAATGTACCCATCTCTACTGGAAATGTCTCCAACCAATCCTGCTTACATTGATGCCCAAATGAAGGCAATGGAGCTTGCCCGCACCTCCGGGCAGATACCTCTTAGCCCAACAGCGATGCCGGGCGGCCCGGGCTTCCATTTTGGCATCACAGACGCACAGGCCGCAAAAGCCCGACTGCACAGACAAACGTTGAACCGCACGCAGTCCGCGCCACTGCCACTGCCCGGCCACTTGGTTTGGAATCAGCATCTGATGCATCAGAAACAGCAGGAGCTACTGATGAAGGAGACACAGAAACTTCACATGAAACACCGCCTCCAGACGGCACTGCTTCAGAAGTCGGCGAGTAAAGGTCACATGGAGAATGTGGATGAGGAGGCTGAGGCTAAACTCGTACAGGAGATGAAGGCGATCAAGGAGAAGGAAGACGAGGACGTCGTCATCGTCAGTGACCCGGCCTCAGCCATGTCGACCAGTCATGAAGCATTCCTGCGCAAACTCAAGCAGCAGACAAGTGACTCACTCGGCAACGGCAACGGCAGCAGCATTCCAGGCCGCACCCTCGAGCGTGCCATGTCTAGCCCCCTGGTGACCGCTGGACACCACATGCCCAGCCTTATACCTCACGAGGCGAGTGCCGAGAAAACATTCATGACAGGTCTGGCGTACGACTCCCTGATGCTGAAACACCAGTGTATGTGTGGCAACAACGACATGCATCCAGAGCATCCCGGCCGCCTCCAGAGCATCTACGCACGCATCCAGGAGACGGGCCTCGCCAGCAAGTGTCAGAAGCTGCAGTGTCACAAGGCATCCCTGGAGGAGCTGCAGACATGTCACAGTGAGGCGTACACCCTCATGTACGGCACCAGTCCACAGAAACTCAGTCCAAAACTCTTCGAAGTCTTACAGCCGAGATTCCGAAAGTTGGCATGTGGAGGAATCGGTGTCGACTCAGACACTGTTTGGAACGATGCACAGACACCACAGGCCACTCGCATGGCGGTCGGCTGCGTGATTGAGCTGGCCACAAACATCGCCACAGGTCGACTTGAGAACGGCCTTGCCCTGGTGCGCCCACCCGGTCACCACGCAGAACCAACACAGCCCATGGGATTCTGCTACTTCAATTCACTGGCAGTGGCGACGAAGATCCTACTGGATCGTCACAAGATGAAGAAGATCCTTGTCATCGACTGGGACGTCCATCACGGCAACTCGACACAGCAGATCTTCTACGCAGACCCCCGTGTCCTCTACATCTCCGTACATCGTCATGACAACGGCAACTTCTTCCCAGGCACCGGTGCGCCGGACGAGTGCGGCATTGACAAGGGACTGGGATTCAACGTGAACATTGCATTCTCCGGAGCACTGAAGCCACCAATGGGGGACGCCGAGTACGTTGCAGCATTCAGGACGATTGTCATGCCCATTGCCCGTGAGTTTGACCCAGAGATCGTACTCGTGTCTGCCGGCTTCGACGCCGCATCAGGCCACCCGCCACCACTAGGTGGCTACGAAGTCAGCCCAGCCTGCTTTGGTCACATGACCAAGCAGATGATGACGCTGGCGAACGGGAAGGTTGGCATGGCCCTGGAGGGAGGATATGAACTGCAGGCGATCTGCGACTCGACGGAGATGTGTCTTCGTGCCCTGCTTGGTGAAGAGATGCCGCTACTGCGGGAAGACGAGATGTGTCGGCCTCCCTGTAGGATCGCTGTCGACGCGCTCGAACAGACCATCAGAAATCACATGACCTACTGGCCGTGTCTGGCACGATACAGAGACACACTCGACTGGTCGATTGTCGAAGCACAGCAGCGAGAACGGGAGGAAGTTGACACCGTCAACGCCTTCGCATCCCTCTCAGTCGTCCCAGAGAAGTCACCTGAAATGATCTCGCAGCAGTCAGACTATGGAACAGCAGAGGCCATGGAAGAGTCATGA

Transcript

RPACG03577.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03104	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006133	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR030559	Family	DNA polymerase zeta catalytic subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45812	DNA POLYMERASE ZETA CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016035	Cellular Component	zeta DNA polymerase complex	Interproscan
GO:0019985	Biological Process	translesion synthesis	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG03577.1 global RNA-seq network