Gene detail

Detailed information of RPACG03458.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG03458.1	HEME OXYGENASE	tig00000909	1145869	1149618	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG03458.1

GTGTGCACTTGTGCGCGCAGGCGGTGCCTCACTTCCTACAAAAATATATTTGTACACGTTGCATTATGGAGTGCGACAAGTCAAACGGTGATGCATCAAATGCCACGAAAACTCTGTTCGACATATATGAAGACGTTAAAGATTCTCCAAAACCTGATGCATTCTGGGATGTAGTGGTGCTGACAGCAGCTGATGAAAGTCAAAAGGTCGCATATGAACTTCAGTTGAAGGAGAAGTTAGACCGTGGCACTATCCCTAGTTTCTGTCGTTATCACGTCTTTTCAGACCCACCGGGGCCTAAAGCAGGCTGCGGCGGTTCTACACTACATGTACTGCAGGAACTGGACAAGTTGTATAGCTCCAAACTGAAGAGCTACCGCATCCTCCTGCTTAATGCCGGGGGGCAGAGCCAGCGACTGCCAAGTGCCAGCGTTCTTGGGAAGATATTCACGGCTTTACCAGTTGGCAAGCCGATGTATCAGCTACTGGAAGTGAAGCTAGCGATTTATCTGCCTTTTTTACGGCGAATGAAACCCGGAATTTTCCACGCATCGTCTGACACCATCGAAACATTTGACCTCGGTAATGGCGGAGACTGGACGTTCGATAAACCAGGCTTCACCGCCCTGGCTCACCCATCTAGCGTGGAGATCGGCACAACCCACGGAGTGTTTGTTCTAACGGAGAACGACGAAGCGACAACTGCGCTGGCGACACTACGGTGCTGTCTTCGCGTCTTGCAGAAACCATCTGAGCAACAGATGATGGAGCAGCAAGCGATTGTGACCATTGACGGCCGACAGTCTGTCTACACAGACAGCTGCTTTTTCTTTGACCACGACGTTGTCGACAAACTGCTCGAGTTTTACCGACTGCAGGCTCCGCTCGGCTGCGAGATCGATGCCTATGGAGATTTTTTGCAGGCATTGGGTCCGCATGCGACCATTGACTATACAATGGACACGAAAAATGTGAATACAGTTGAGCCTAAACTAGTGCAAGTACGACAACAAATATACCATCTTCTCCGAGACACACCACTGAACGTCGTCCTGCTGAAAGTCTCACGCTTCTACCATCTCGGCACGATGAATGAATACATCGACCACCTCTGTGTGGGCACCGTGCTGGCGTGCAGTGTCGGCTTCGGTAGGAATGTTTTCAATGACATCCACGACACGGGCCCACCCGCCGACGGCTTCAGTGATGCTATACAAGGATGCTTGATGCACAACAGTCTCCCTCGTTCGTCCATCGTCGCACACAATGCTATTGTCGAGTATTGCAACTTCAACAACGCTGTCAACATTGGGTCACACTGCGTCATCAGTAACTGTGCATCACAAGATGCTGTAGATGTTATCATACCTCGTGACAAGTTCATTCACACAGTCCCTGTACGACGACCGGGCAGAGAGACAGAGTATGTCACAATCATTCTCAATGTCGGTGATAACCTGAAGACAAAGGTTAAATCTGAGTCAAAAGTGGGTTCTCTCCCATTTCTGGGTCAGCCGCTGTCGGTGACAATGGACACGTTGTCCCTCTCAGCGGTTGATCTGTTTCTCGATTCTTCCCGACCGTACAGTGTTTGGTATGCCCAACTGTTCCAGGTCTGTCCGTCTATGAGCAAGTCATTTAGTTCGGCACTTGATCTACTGCAGAAACTATCGTCTTCTGACACAGCCGCAAATGTTGACGTGAATGGGACTGCATCGTTGACACAAACGAGTGCTGACATGGATGACAGAGTGTCGATGGCTGACGTGCTACAATACAAGGATGTCGCATCAATGCTGCAATACCGACGATATTTGCATGACAAGATCATGTCAGGCCAGTAGTAGCAGACTTTGTTTTCGATTGCTGTTTTGGAAGGCATAAATCTCAGATCAAATCGGTGATACAATAATACTTTTAATCTATGCAGTGTGATAATAAAAACTATATTGGTAATTTATAATTGTAATTTTGTTAGTATGTTGCCTTCAATTTATTATATATATATATATATATATATATATATATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01126	Heme_oxygenase	Heme oxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002051	Family	Haem oxygenase	Interproscan
IPR016053	Family	Haem oxygenase-like	Interproscan
IPR016084	Homologous_superfamily	Haem oxygenase-like, multi-helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10720	HEME OXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004392	Molecular Function	heme oxygenase (decyclizing) activity	Interproscan
GO:0006788	Biological Process	heme oxidation	Interproscan
GO:0006979	Biological Process	response to oxidative stress	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0042167	Biological Process	heme catabolic process	Interproscan
GO:0055072	Biological Process	obsolete iron ion homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG03458.1 global RNA-seq network