Gene detail

Detailed information of RPACG03019.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG03019.1	AUTOPHAGY-RELATED 2, ISOFORM A	tig00000665	873315	884374	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG03019.1

ATGTTTGTAAGAAAACACGTGCAAAGATTACCATGGCGCAATTTAGGAAATCCCGCCAAAAACACGTCATTTATGTTGAGAGCGGGTCAACCTCATCACCCTGCGGCCTCCTACAGACTCTTTGCCAGTGGCACCTCCAGTGATGACTTCCTACACCAAAGTATTGTTCCAACCGACCACTTCCAAAAGAGTCTGCCTCGACTCCCAGTGCCTGAGCTCGCAAAGACCTGCGAGCGTTACCTGAACGCACAGCGCCCCCTGTTGTCAGATGAACAGTTCAAGCAGACAGAAGAGATTGTGTCTAACTTCAAGAATGGAGATGGCAAAGATTTACACAATGAACTTGTGGAGCAGGACAAAAGGAACAAGAACACAAGTTACATATCAGCACCGTGGTCAGACATGTATCTAAAAGGTCGCATGTCAGTTGTCCTCAATCACAACCCTTTCATTGCCTTCAATGACGATCCACGCCCTCAATATAACAACCAACTGATCCGAGCAACCAATTTAGTTGTGTCTTCACTCCGCTTCATGAAGACACTTCGCTCCAATGTCCTTGAACCTGAAGTCTTTCATCTGAACCCAGAAAAAAGTGACACAGTCAAGTTCCGGAAGTTTGTGCGCATGCTGCCAAAGTCGTTGTCATGGTATGGGGCGTACTGGTATAAGGCATTTCCCCTCGACATGAGCCAGTACTCCAAGTTGTTCAACACCACGCGCATACCAAGACCTGTGAAAGATGAAATTTTCACTGACAGTTCTGCACGACATCTCTTAGTCATAAGGAGAGGCAACTTTTACGTTGTTGATGTTCTCGACAAAGATGGTAACATTCTGGATGGAGAGGAGATATTGGCACACCTAAAGTACATCATGGATGACCGGTCAGCTCAACCTGACCACCCCCTTGGGGTTCTTACAACAGCTGACCGCGACACCTGGGCCAACGTGAGGCAACAGCTGGAAGCTGCAGGAAATGGCGAGAAGCTGCGACTCATCGACAGTGCTCTCTTTGCCCTTGCCCTTGACGATGAAGGCCCACAGGACGTACGGCAGATCTCAAAGTCCTTCCTTCACTCCGATGGGGTGAACAGGTGGTTCGACAAATCATTCTCGTTGATACTTGATACGAACGGGAAGGCATGTGTGAACTTTGAGCACTCCTGGGGCGATGGGGTTGCCGTACTGCGTTACTTCAATGAGATATTCACCGACACAACAACTCGTCCTCGAATTAACCCCAACTCACACCCCGCCCCTGTTGACTCGGCCAGTGTTGTCCATAAACTAGAGTTTAACTTGACCCCAGGAGTGAAAGAGGGAATCAACAAGGTGAAGGAGGAGTTCAGGAAGCGAGCAGACAGCATCCTACTAAACTACATTGAATATAGAAGGTTTGGGAAGAATTTCCTCAAAAAACAGCGGCTAAGTCCTGATGGCATGATGCAACTTGCTATCCAGTTGGCCTTCTACAAGCAATACGGGAAGACAGTGGCGACATATGAGTCTGCAAGTACAGCCGCCTTCAAGCATGGCCGCACAGAGACAGTTCGCTCTGCAACCATGGCAACGAAGAATGCATGCACAATGTTCGAACAGTTAGGAACCAAGTCAACTGCATCAGAAATACGAGCCGCTTTGGAGGAGTGTTCTAAGGTCCACGGGCAGTTGACAAAGGACGCTGCCATGGGTCAAGGGTTTGACCGCCACCTGTTTGCTCTCCGTTACCTGGCCGAAGCAGACGGTCATCTGCCAAAGCTGTACACTGACCAGGCATACAAGGACATCAACCATGTGTTCCTCTCAACATCCACTCTGTCCAGTCCAGCAGTCTTTATTGGAGGCTTTGGCCCGGTCGTCCCAAACGGATTTGGCATTGGGTATGGGGTGGCAGACGATGTGATGGGGTGCATTGTTACTGGGTACAAGGGCAACCAGAATGTCGATCAATTCCTTGAGTGTATGGAGGAAGGCCTGGATGATATCCACAGGGTGCTACAAGAAACCAGGCCATGA

Transcript

RPACG03019.1

CTTTGAACTCCGGTTTGAGGCGGAACTAGTAGACGAGCGAGCACAGACCAGCGAAGGAAAGAGCAGCTGTACTTGTCAGAACTATATAATTTGCTGTCATGTTTGTAAGAAAACACGTGCAAAGATTACCATGGCGCAATTTAGGAAATCCCGCCAAAAACACGTCATTTATGTTGAGAGCGGGTCAACCTCATCACCCTGCGGCCTCCTACAGACTCTTTGCCAGTGGCACCTCCAGTGATGACTTCCTACACCAAAGTATTGTTCCAACCGACCACTTCCAAAAGAGTCTGCCTCGACTCCCAGTGCCTGAGCTCGCAAAGACCTGCGAGCGTTACCTGAACGCACAGCGCCCCCTGTTGTCAGATGAACAGTTCAAGCAGACAGAAGAGATTGTGTCTAACTTCAAGAATGGAGATGGCAAAGATTTACACAATGAACTTGTGGAGCAGGACAAAAGGAACAAGAACACAAGTTACATATCAGCACCGTGGTCAGACATGTATCTAAAAGGTCGCATGTCAGTTGTCCTCAATCACAACCCTTTCATTGCCTTCAATGACGATCCACGCCCTCAATATAACAACCAACTGATCCGAGCAACCAATTTAGTTGTGTCTTCACTCCGCTTCATGAAGACACTTCGCTCCAATGTCCTTGAACCTGAAGTCTTTCATCTGAACCCAGAAAAAAGTGACACAGTCAAGTTCCGGAAGTTTGTGCGCATGCTGCCAAAGTCGTTGTCATGGTATGGGGCGTACTGGTATAAGGCATTTCCCCTCGACATGAGCCAGTACTCCAAGTTGTTCAACACCACGCGCATACCAAGACCTGTGAAAGATGAAATTTTCACTGACAGTTCTGCACGACATCTCTTAGTCATAAGGAGAGGCAACTTTTACGTTGTTGATGTTCTCGACAAAGATGGTAACATTCTGGATGGAGAGGAGATATTGGCACACCTAAAGTACATCATGGATGACCGGTCAGCTCAACCTGACCACCCCCTTGGGGTTCTTACAACAGCTGACCGCGACACCTGGGCCAACGTGAGGCAACAGCTGGAAGCTGCAGGAAATGGCGAGAAGCTGCGACTCATCGACAGTGCTCTCTTTGCCCTTGCCCTTGACGATGAAGGCCCACAGGACGTACGGCAGATCTCAAAGTCCTTCCTTCACTCCGATGGGGTGAACAGGTGGTTCGACAAATCATTCTCGTTGATACTTGATACGAACGGGAAGGCATGTGTGAACTTTGAGCACTCCTGGGGCGATGGGGTTGCCGTACTGCGTTACTTCAATGAGATATTCACCGACACAACAACTCGTCCTCGAATTAACCCCAACTCACACCCCGCCCCTGTTGACTCGGCCAGTGTTGTCCATAAACTAGAGTTTAACTTGACCCCAGGAGTGAAAGAGGGAATCAACAAGGTGAAGGAGGAGTTCAGGAAGCGAGCAGACAGCATCCTACTAAACTACATTGAATATAGAAGGTTTGGGAAGAATTTCCTCAAAAAACAGCGGCTAAGTCCTGATGGCATGATGCAACTTGCTATCCAGTTGGCCTTCTACAAGCAATACGGGAAGACAGTGGCGACATATGAGTCTGCAAGTACAGCCGCCTTCAAGCATGGCCGCACAGAGACAGTTCGCTCTGCAACCATGGCAACGAAGAATGCATGCACAATGTTCGAACAGTTAGGAACCAAGTCAACTGCATCAGAAATACGAGCCGCTTTGGAGGAGTGTTCTAAGGTCCACGGGCAGTTGACAAAGGACGCTGCCATGGGTCAAGGGTTTGACCGCCACCTGTTTGCTCTCCGTTACCTGGCCGAAGCAGACGGTCATCTGCCAAAGCTGTACACTGACCAGGCATACAAGGACATCAACCATGTGTTCCTCTCAACATCCACTCTGTCCAGTCCAGCAGTCTTTATTGGAGGCTTTGGCCCGGTCGTCCCAAACGGATTTGGCATTGGGTATGGGGTGGCAGACGATGTGATGGGGTGCATTGTTACTGGGTACAAGGGCAACCAGAATGTCGATCAATTCCTTGAGTGTATGGAGGAAGGCCTGGATGATATCCACAGGGTGCTACAAGAAACCAGGCCATGATCACAGGGCATTTACAAGGGAGTAGGCCATAACCGCAGGGCGTTATGAAAGATTGGAGCATAACCAAACAGTGTTATGAAAGAGAGACATAGCCACAGCGTCTTACAAGAGTCAGTGTGACTGATGCTCCAGCAAGAAAATGTCACGCTCACCACATTTTCTTCCAAATGGAACATGAATATAATAATATTATGCAGTTTATCTGTATAATTGCACAACTAATTTATTTCACTAGCATAATGATGTAGGATGTTGTAGATCTTGCCGTTTTCACCTGACACAATTGCATTTGATTATTGCTACGCATGCTTTCTAAGTCGATCAAAGTTGATAACCGATATCAAATTAACGATAGGATTACCAATAAATGTAGAAAATCATACCAGAAACTTTCTACCTTTTCTAATTACTTCATATGCCACTGTTTTGCCAGAAATTATCTTAGATAGGTTTTTAATTATTAAATGAAACCGTTTTGTTTGTTTTGCTTATTATTTGCAAACATTTGCACTGCAAAGTATTGTGATTTCTACTCAGGGATAATATAGGATTGATTATTGTGCATGTTATTATCATGATGAAATTAACAAATAAAGTAATGATATATAAGTACGAGTACAGCTCAATTTGTTTGCGTTTATCACTAACTGTGAAATTAATACTTTGTCCATGTGATATATATATGTGAGTTGCTTCCACTCACAGACATGCAGAAGATTTTCGGCATAAAAAGACAGCTGTGAAATGTACAATTGTGCCATGTAATTGTAATGTAGCACACAGAATCATGCTGTTTTAGATCTACGATTAAACCAACGACTCACTGGTGATTGTTGTCTTATCGTGGATTAGCTTGTGACATCTTTGATACTGCATGGTTGGTTGATGGGTGTCTTGTGCCTGCAGTAGGGTCACACAAATCAGGTTGTGAAAAAGGTAGATATTATGAGAACGTGTGGAGCGCATCCAACTTACAAGAGGACTTGGATATTAGTACGGATACAAGGACTGATGCTGCAGTCGTTTTGGATCTTTTGAAAACAACGAACACCAGAAATAGATCTTATATCTGCGTAGAGATATGAGACACACATTTCCCGATGACTGTGTATTAGCAAAGAAACGAAACATCACTGTTTGTTTCTCATTATTCCCAGTAGGTGGTTCCGTGTGGCACAATAGTTAACGATTTTGTTGTTAAGTAGTATGCATTTAATAAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09333	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan
PF13329	ATG2_CAD	Autophagy-related protein 2, middle RBG modules	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015412	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR026849	Family	Autophagy-related protein 2	Interproscan
IPR026885	Domain	Autophagy-related protein 2, middle RBG module	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13190	AUTOPHAGY-RELATED 2, ISOFORM A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000407	Cellular Component	phagophore assembly site	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0006914	Biological Process	autophagy	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034727	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0044805	Biological Process	obsolete late nucleophagy	Interproscan
GO:0061709	Biological Process	reticulophagy	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG03019.1 global RNA-seq network