Gene detail

Detailed information of RPACG02872.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02872.1	39S RIBOSOMAL PROTEIN L20	tig00000633	1413115	1476042	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG02872.1

ATGATATACGGCAAAATGGAGGGTTTAGACATGAACAGCCTGACGGAGACGGAGAGGGACGCTATCTTGTCCGTCATACGTCGCAACGACCAACTACAGCAAGCTGAACAGCAAAGAATAAGCAAACTTCAGTCTGAGGTGAAGTTCATCCGTCTGAAGGGCGTCATCAAACCTGGACAGGACGCTGCCAAATCTTGTGCACGATGTCGTACGCCATTTGGCTGGTTCTTCAACAAGGGCACGATCTGTCCCCAGTGTCAACACCGAGTCTGTGACACGTGTCAAGTGTCCCTGGAGCAGGAGGCCAAATGGCTGTGTGTCCTTTGTCACAAACAGATGCAGCTACAAGCAATGACAGGAGATTGGTTCTACTCGAAATTTCGGAAGAGTAAGCGTCATAAACGAACGAATAAGGTGATAACAGGCTCTGAGATTGTGCGTACATCTATCCATCGACCAAACCGACCCAACCGCCTAGCAAGTTGTAATGCAACTGCCACTGGAGCTGCGAACTCCATCGGTCAGGAGGTGAAGCGGGCATTAAGCAACAACAATGCATCACCCAAACCTCAACAACACCCAAATGTTTGCGTGGACGGCGAATCTAGTGACACCCAAAGCATGGAGGACAGCTACTCTCCAAGGCGACATCTGCAGAAGGACATGGAAGGAACCGCCTACCCAAAGGACTCTGATCGACAGAAGCTTCTGGATCTTATTCGACCAAAAATGCCAGATTCAGAATTTGCAAATGGACGCAGCGCCATGGGTACGCAACCACAGGTGAGAGTCGAAGTAAAGCAGGTCTCGTCCCGTCGTTACAGCGATTCTGATACGAGCTCTGATTCAGAGACCACAATCCCGAGTCCGCCGCCATTTTCTCGAGCGACCGACACGTCTTTGAATAGTGAATCCATGCGGAGTTCATTCCGCAGCACAATTTCAGCCATCTCAAGCGACGGCCCAAATACAGTTGTCACAGAGGGTATATCTGATCTTGACATTCCTACATGTAGTAGCGCGAGTGTGTCGCCAACTGTCTTCCGCAAGGATGTCACAGCACCGAGTTATCACAGGGACAGGCAAAACGAGAGACAAAATGACTTTGACCAGTTGCGATCAAATCCATTGTCTTCATTCTCTGATGGAAGTGGATTACTTGGCATATCGCCAACACAGTCAAGATGTGAAATTGAAGAGGAGAAACAGATGAAGCAAGTTGTGAGAAGGTCGCAAACGAAGCAGGACTCACCGGTTGACTCGAGCGATTCAGAAGGCGAGTTCACGACCGAGCAGTTCATTCACATGAAGATTATGAAGATCTCCGGGTCAAAGACAGAGGCGAAGTCCGCAAAAGACCAGAATACTTCAGAGCCCCCACGCACCCTGTCCCAACCCGAGGTGATTATCACAGCCCATGACCCCTCCCCCGCACAGGAGTTGAGCGATACGGAACCCACCCCTCCTCCAGAGTTACGTCACCCCCCGGATGCAGGCACCTCGTGTGTTGGGGTTGAGGCAGAGACGACAAGAGTCGAGTTGAGCGATGTAGAGAAGCCAGGGCTCTCTACCAATGAGACGGAAGAAGAGGAATCTAGACATAATGGACGCCTTTCCTCATCATTAAAAAGCACCACACAAGAATCTGACGATTATAGTTACACAGGATGTAATGCCGAATTGGATATAGCAGTGACACCTAGTGGTAATGACACACGACCAAGGTCACCCTCATCAATTCCGTCACCTGCAATGATGCGTTCAAAGAGGACACTAGAGGGTGTCTGTGAGCTGGACGAGGATCGCCAGAGTTCGGACAGTTACCCAGTTACTCCCCGTACAGACAGTCCATCTAGCACGTCCAGTCACTACAGCCGCGGTCAGCACAGCAACAGGAGCACCAATCTACTTACACCATTCTCTGTGAGCACGGAGAGCATGATGAGTTACTATAGCGACGCCGGGGAAGGGAATTATGGGAAGATTCCAGTAACAGGAGAAATACTGTTTGGACTCGATTATAACTACAAGAATAGTGTCTTTGAAGTAACGATCCGACAGTGCAAAGACATAGCCACGGTCGACGCAAAGAAAAAGAGATCAGATCCGTATGTCAAGACTTACCTGTTGCCGGACCGCACAAAGAATGGAAAGCGGAAGACGAGAGTGAAGAAACATACCCTGAATCCCGTCTTTGATGAAATCTTAAAATACCAAGTGACAAAGAGTGAGCTGGAGACGAGGACACTCTGGGTGACAGTGTGGCACAATGACACGTTTGGACGCAACGACTTTCTTGGTGAAGTGACACTGCCCCTTGATTACTACGAGTTTGGTGACAGCTCAGCCCAGTGGTACAAACTGCAGGAGCGGAACCCACTGCCGCTATCGCTGCTCACCTACAAAGGAGATCTGAATCTGTCACTGATGTTTGTGAGTCCAGAGAACCTTCCTGGCCGGAAGAAGGATGGCCGATGTGGTTCGAACGGTTCGCTTCATGTTCTCATCAAGCAGGCGAGAAACCTCACAGCGGTTCGGGCTAATGGCTCATCCGATCCGTTCTGCAAAGGTTACTTGTTGCCGGACAAGGTGCGTCGAATCAAGCAGAAGACGTCTGTGCTAAAGAAGAACTGCAACCCAACGTGGAACCATAAGATGGTGTTTGACAACGTCTCGTGGGACGAACTGAGGGACTATTGCCTTGAGCTCACCATCTGGGACTATGACCGCTTCACCAGCAACGACTTCCTCGGTGGTGTAAGACTCAACCTTGGCACTGGTAAAAGTGGAGGCAGTGAGGTAGACTGGATGGACGCAAAGGGAGATGAGATCTCCATCTGGCAGGCAATGCTTGACAGACCCAACTACTGGATAGATGGCACACTCATGGTCCGCCCCAACATGGACCGTCGCAAGTAG

Transcript

RPACG02872.1

AGCGTTTCAAGGTATGCACAGTGACATGGCAGGTCTGACTCGAGGTGGCAAGTGTTTGTTGATGACGTGGAGTTAGTCACCATGAGAAAGCTTTAGTTTGATTTCGGGACAGTAAAGATTTGAACAGAAGTTGTCGAGTCTAGTGCGAACCTGAAATAGTGATGGGCAAGAGGCAGACAACCTGAATCGCGAACCTGCATTAAGATGTTATTGGAAATGGATTTAATACATTCTGTCTGCATTCGTGTCGTGCCGCTTGTCACATATCCTACCAGATGATCCTACGCTAATATTGTGATATCAACAATGCTGGATGAATAGGAATCACATTTGAACAGTGGCACCAGTCCACACCAGAAGCTAATGGATTTAGTGATATAATTGTCAGTGCAACCGTTTGATGATTAGTTCCTGCAGCATATACCACTACGGGTAGGATTCGCAAGAATGATCAGTTAATAAAACTGACTTGATGACCCAGCACAGGTGTAACATCATAGGCCACCGGATGTAGCAGGAGATGCAGCTGTGATGTTTACAACAGTTCAAAGCTGTTTTCATTGGCATAACTCCGGATTTATCTACCGTTTAACGACGCAAAAGGATCGTCTGCGAAATTGACAGTTTGCCAAAATATGGATATCGAATCACCAACAGTGTTGGATTAATACGACTGTGCAGCAGAAATAAGTGCCAAAGGATAGAAGGAACAACTGCGGATTAACAGTGGAATTATTTATGATATACGGCAAAATGGAGGGTTTAGACATGAACAGCCTGACGGAGACGGAGAGGGACGCTATCTTGTCCGTCATACGTCGCAACGACCAACTACAGCAAGCTGAACAGCAAAGAATAAGCAAACTTCAGTCTGAGGTGAAGTTCATCCGTCTGAAGGGCGTCATCAAACCTGGACAGGACGCTGCCAAATCTTGTGCACGATGTCGTACGCCATTTGGCTGGTTCTTCAACAAGGGCACGATCTGTCCCCAGTGTCAACACCGAGTCTGTGACACGTGTCAAGTGTCCCTGGAGCAGGAGGCCAAATGGCTGTGTGTCCTTTGTCACAAACAGATGCAGCTACAAGCAATGACAGGAGATTGGTTCTACTCGAAATTTCGGAAGAGTAAGCGTCATAAACGAACGAATAAGGTGATAACAGGCTCTGAGATTGTGCGTACATCTATCCATCGACCAAACCGACCCAACCGCCTAGCAAGTTGTAATGCAACTGCCACTGGAGCTGCGAACTCCATCGGTCAGGAGGTGAAGCGGGCATTAAGCAACAACAATGCATCACCCAAACCTCAACAACACCCAAATGTTTGCGTGGACGGCGAATCTAGTGACACCCAAAGCATGGAGGACAGCTACTCTCCAAGGCGACATCTGCAGAAGGACATGGAAGGAACCGCCTACCCAAAGGACTCTGATCGACAGAAGCTTCTGGATCTTATTCGACCAAAAATGCCAGATTCAGAATTTGCAAATGGACGCAGCGCCATGGGTACGCAACCACAGGTGAGAGTCGAAGTAAAGCAGGTCTCGTCCCGTCGTTACAGCGATTCTGATACGAGCTCTGATTCAGAGACCACAATCCCGAGTCCGCCGCCATTTTCTCGAGCGACCGACACGTCTTTGAATAGTGAATCCATGCGGAGTTCATTCCGCAGCACAATTTCAGCCATCTCAAGCGACGGCCCAAATACAGTTGTCACAGAGGGTATATCTGATCTTGACATTCCTACATGTAGTAGCGCGAGTGTGTCGCCAACTGTCTTCCGCAAGGATGTCACAGCACCGAGTTATCACAGGGACAGGCAAAACGAGAGACAAAATGACTTTGACCAGTTGCGATCAAATCCATTGTCTTCATTCTCTGATGGAAGTGGATTACTTGGCATATCGCCAACACAGTCAAGATGTGAAATTGAAGAGGAGAAACAGATGAAGCAAGTTGTGAGAAGGTCGCAAACGAAGCAGGACTCACCGGTTGACTCGAGCGATTCAGAAGGCGAGTTCACGACCGAGCAGTTCATTCACATGAAGATTATGAAGATCTCCGGGTCAAAGACAGAGGCGAAGTCCGCAAAAGACCAGAATACTTCAGAGCCCCCACGCACCCTGTCCCAACCCGAGGTGATTATCACAGCCCATGACCCCTCCCCCGCACAGGAGTTGAGCGATACGGAACCCACCCCTCCTCCAGAGTTACGTCACCCCCCGGATGCAGGCACCTCGTGTGTTGGGGTTGAGGCAGAGACGACAAGAGTCGAGTTGAGCGATGTAGAGAAGCCAGGGCTCTCTACCAATGAGACGGAAGAAGAGGAATCTAGACATAATGGACGCCTTTCCTCATCATTAAAAAGCACCACACAAGAATCTGACGATTATAGTTACACAGGATGTAATGCCGAATTGGATATAGCAGTGACACCTAGTGGTAATGACACACGACCAAGGTCACCCTCATCAATTCCGTCACCTGCAATGATGCGTTCAAAGAGGACACTAGAGGGTGTCTGTGAGCTGGACGAGGATCGCCAGAGTTCGGACAGTTACCCAGTTACTCCCCGTACAGACAGTCCATCTAGCACGTCCAGTCACTACAGCCGCGGTCAGCACAGCAACAGGAGCACCAATCTACTTACACCATTCTCTGTGAGCACGGAGAGCATGATGAGTTACTATAGCGACGCCGGGGAAGGGAATTATGGGAAGATTCCAGTAACAGGAGAAATACTGTTTGGACTCGATTATAACTACAAGAATAGTGTCTTTGAAGTAACGATCCGACAGTGCAAAGACATAGCCACGGTCGACGCAAAGAAAAAGAGATCAGATCCGTATGTCAAGACTTACCTGTTGCCGGACCGCACAAAGAATGGAAAGCGGAAGACGAGAGTGAAGAAACATACCCTGAATCCCGTCTTTGATGAAATCTTAAAATACCAAGTGACAAAGAGTGAGCTGGAGACGAGGACACTCTGGGTGACAGTGTGGCACAATGACACGTTTGGACGCAACGACTTTCTTGGTGAAGTGACACTGCCCCTTGATTACTACGAGTTTGGTGACAGCTCAGCCCAGTGGTACAAACTGCAGGAGCGGAACCCACTGCCGCTATCGCTGCTCACCTACAAAGGAGATCTGAATCTGTCACTGATGTTTGTGAGTCCAGAGAACCTTCCTGGCCGGAAGAAGGATGGCCGATGTGGTTCGAACGGTTCGCTTCATGTTCTCATCAAGCAGGCGAGAAACCTCACAGCGGTTCGGGCTAATGGCTCATCCGATCCGTTCTGCAAAGGTTACTTGTTGCCGGACAAGGTGCGTCGAATCAAGCAGAAGACGTCTGTGCTAAAGAAGAACTGCAACCCAACGTGGAACCATAAGATGGTGTTTGACAACGTCTCGTGGGACGAACTGAGGGACTATTGCCTTGAGCTCACCATCTGGGACTATGACCGCTTCACCAGCAACGACTTCCTCGGTGGTGTAAGACTCAACCTTGGCACTGGTAAAAGTGGAGGCAGTGAGGTAGACTGGATGGACGCAAAGGGAGATGAGATCTCCATCTGGCAGGCAATGCTTGACAGACCCAACTACTGGATAGATGGCACACTCATGGTCCGCCCCAACATGGACCGTCGCAAGTAGGTCAACATGCCAATATGGACCATGGCAAGTAGGTTGACCTATCAACACAGACCATCATGAGGACTGACACCAACACTCATCTGTAAACCAAGCTGCCAATGTGGACCATTACAAGTAGATTGACATGTCAGTGTGGACCATTACAAGTACATGGACCATTGCAAATGGTTCAGTCACAATACGGACCATTGTGAATAGACAGACCTAACAACAGAGGTGCAGGTAGATTAACCATGTTATGAGGTGTTGCAGGCAGATTAACCACGTTATGAGGTGTTGCAGATAGATTGAATGATGACAAAATATATCTGCAAGTACATTTATCAATTCATGGTGGATTGTCACAAGTATATTGGCTGTCTGAAATGAACCAATACAAGTTGGCTGGATAGTTCAACAATGGACCGTAACAAGTAGTAGGCAGATCGTACAAAGGCAGGTCACCACAGGTTAATTGATTGATATAATGTGGCTTATTGTTCAACTAGGATTATCAGCCTCAGGTAGTGAGGTTAGTGGGAATGGAAGAGGGTGAAAATAAACAACCACACAGATAAGTTTCAACAAAATAACTTGATTTATGGCTCTGACATGTTCCATCTTCTGCAGTCACTTGAGATGTGCCAGTTTGGAATATGTAGTCTTCCTTTTGAACCAATCCATGCCAAATGTAGCAGAGTATCCAGTTACCAGTGTTTGCGTTTTGACACAATGAGTGACAGTTTTGGTTGTGTTTTGTTTATGAACGTGCGCATTTTGTCGTCTGGAATAATCTCAGATGTAGAGCAGGAAGCAAACCAGGAATGTACGGATACGCGATATTGATCTGTGAAAAATGAAGTATTTGTGATGAATATTAGATTTGTGATGAATATTAGATAAGTAACAAAATCAAGCGACATAGACAAATAGTATAGTTCTCTCATTTTCGCTGGTGGAAATTGCTTCAAGGTTTGGCCGCACATTACATGTACAAGTGCGACATAAAAATGTGTCGGTTGTTCAGAGTGTTTTCACTGTATGTTTTAAGTAGGCTTGTGTAACATAAGAAACAAGTCCTGCGATTGTGCAACTAACGTATATTTTGTATCATTTTAAGACCTACATAGTCACGCTGTTTGTATTTTATACATACATACATATTATCCAGGTTTTTAGTTGTTTTGCCCCTCAAAAGATGACTAACAACGGCTACCGTGACGACAACAAATGTTATATATTCTTTACGCAAGACAATAATTCATACATTGCTACATAAATTTAGTTTCTGATGTGTACAGTGCAAGTTGCTTTTGCCGTTTTACTAACATTAGCTGTTTGCTAACGATCAGCTGTAATTTCCTATGTATATACAACATGGGAAGTGAACGAAGTGGCAATGGAATACAGAATAGTGCCAGAAACGTAACTTATATAATATTATATATAAATGTCAGTTAAACTTGGTTTGTCAATGGAAAAGTATTCCAAATTGTTTCACAAAAGAATTTCTTTTGTTCAGTTGTCTGTTATAAAGATATTTCTGAAAAGTGCCTTAAGAGAAGTTCACTGCAAAACTTTTTAAGGCACTCGAGACCACATTACATTTTGTTCTCTATCGAGTACTTGTGTGCAAGTATGAGTTTGCAGGCATGATTGTATTTCAAATGTATGTTATTAAAACAATTTACATGTACATTTCCAGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00453	Ribosomal_L20	Ribosomal protein L20	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005813	Family	Large ribosomal subunit protein bL20	Interproscan
IPR035566	Homologous_superfamily	Ribosomal protein bL20, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10986	39S RIBOSOMAL PROTEIN L20	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005761	Cellular Component	mitochondrial ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02872.1 global RNA-seq network