Gene detail

Detailed information of RPACG02823.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG02823.1	ZCCHC10 PROTEIN	tig00000633	550344	552757	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG02823.1

ATGATGCAGTGTGACGTCCTTGTACGGATATGTTTTCTAGCAGGTGTCATATTGACGCTAATGATTGGCGCTATTAACGTCTACAAAGAACCAGTGGCAGGAAATATACCGACTATTGCGTCGGATTTTAAAATGGCGTCTATCGTACAACACAGTCCACGTGGACGCGACGTGAAAGCAATAACAGAGACGAGGAAGCCGGACCGAAACTCAGACCAGAACGAGACACCTCAACGCCGCCTACCCCAGTGCATCATCGTCGGGGTGAACAAAGGCGGCACTCGGGCACTCCTCGCGTACCTCGGACTCCACCCCGACATCGTTACGACACATCAAGAAATAAATTACTTCAGTTTATATTACGACAAGGGACTGGATTGGTATCGCAGTCAAATGCCGCTGTCGACGCGCGGCCAACTCACCATAGAGAAAAGTCCGAAGTATTATGAAACAGCCGAAGCTCCCAAACGAATTCACGGAATGAACGCCAGCATCAAGGTATTACTAACTGTGCGTGATCCCGTTCACCGTTCCATGTCCAACTGGCTGCACATTTGTCGAAACGCCCGCCGGAAGAGGAACAACACGGCAGTGTGTCGAACCTATGAAGACTCCGGTATATTGACGAGAGACGGCAACGTTGATCCTAATTGTGAGTTCATTCGTCGTTCGTCTTACACAAAGTTCATAGACAATTGGACACGTTGGTTTCCTCTCGGTTCTCAGCTACACGTTGTTGACGGTGGTAAACTGGTTACGGAACCACTCACTGAACTGGCAAAAGTAGAAACATTCCTCGGGCTTCAACATCAAATCACAGAAAAGAACGTCGTGTTCAACAGCGCAAAAGGATTTTACTGCCCAATGACCAGTGTTGGAAAGACGGTTTGTTTGGGGAAGAACAAAGGTGTAAAACACCCGACGTTGGCGCCAGGGGTAGAAGCAAAGTTGAGGCGGTACTTCAAACCTCTGAATCTGCGTTTCTACCGGAGCGTTGGTTACGATTTCGGATGGTCATAACCATCGGAAAATTGATAATAATTAAAACATATATTGCCAGTAGCTCATGTGAGGAACATTTCCAAAGAAAACTGTATGTCCAGAAATAATGCTCATTCTGTCGGCATAATAATGCCAGCTCCTGCTGCAGTGACTTAGAATCTCATAAGTACATTTATATCTAGTCGTTCCGAGAAACCAGAAAATCTCAAAACAGTGCAATGAATAGACATTTCTTGTAATTCCGATGGAATGTTACAATCTTGTAAGTTCTCTCGTAACTGGCGATGTCGAGTTCTCGTAAATCGGATAACATTAAAGGGACAAAACTTCTTCTTTTCCCCGCTCTTAGCTAGCATAATACTTTGCAACAGGAAGTCTGATAGCTTGACCGTGGGAACACAGATAATCGTTGAACATCAAATACATTGCAGTTAACTGGGGTTGCTTCGGCAATATTACCAATTAAGTTTGTTTGGAAACTTCACATTTCATTACCGTACGTTATAAGTGCTGCGACGTCGCAATTATTCAAATTTCATCAACAAAAGTGATTCGTTAAATGAAATGCTGCCAATAATCTGCTGTCAGAAAGTACGTTACAGTTTATGTAACTGATGCTGCTTGATATAACCATATAATGAAAACGAAGACTTTGTGTACGTTTAAGTACTACTTCTCTGTACTTCTACTTCTATCGATGTTCGGTTATTTTGTCACTTCAACATAGAACGTTACTTATACATAGATATTTCTTCTTACTTACTCTTGATTTGCTACTTCGCTATGCATCAACTTCGTTACTTTTACGAAAAAGAATAGTCAGAAAGAGACACAGCGCCAGTCTTAGCAGTGTAGCCGATATACTACACTGCCCTCCGACCCTCGAACAAGATGATTACTGTATATGGCGAAGTAGAGAGACGTCGTGAAGGATGACGTTGACCTTTTCGTTGTGCTGAAATAAAAGTAATTTTCAGTTAAACAAGACAAGAATGTTTTTCTAGTATTTGACCTAAGATATTATATTTTTCTTACGTGTATGCATGCACGCACGCATACACACACTCGCGCACGCGCACACACCCACAACACTGGTACAACGCATACAGTTCTTGCACTTCTATAATGCCTGAGACAGTCTGAAGGCATGATACCGACTCGATGAACCCATTTGAATATAGATAATTATTGATTTTCATACTTATGCGTGTGATTATCTCGCTGTTGTTTGCCTAACACCCGCCAGGCGACTGCCCTCGACTGAATACAATATGAGTCATCGTGTCGTACGAGGTGTGCGTGTTTCGTGCCATATCGTTGTTAGTCAATGTACTAATGCGTGACTCGAGGGGGGGGGGGCACAACTCCTATAGCCTTTGTGGACTCCAGATAAGCCAAAGGCTTCCTTGTCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00188	CAP	Cysteine-rich secretory protein family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000366	Family	GPCR fungal pheromone mating factor, STE2	Interproscan
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR001734	Family	Sodium/solute symporter	Interproscan
IPR003582	Domain	ShKT domain	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR014044	Domain	CAP domain	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR035940	Homologous_superfamily	CAP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13491	ZCCHC10 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004932	Molecular Function	mating-type factor pheromone receptor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG02823.1 global RNA-seq network